Wall clock time and date at job start Tue Mar 31 2020 09:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46947 * 2 1 4 4 C 1.50699 * 109.47063 * 239.99823 * 2 1 3 5 5 H 1.08005 * 119.99951 * 238.31186 * 4 2 1 6 6 C 1.37868 * 119.99947 * 58.31944 * 4 2 1 7 7 N 1.31519 * 120.00166 * 2.54026 * 6 4 2 8 8 Si 1.86802 * 120.00035 * 182.53825 * 6 4 2 9 9 H 1.48506 * 109.46686 * 94.99572 * 8 6 4 10 10 H 1.48495 * 109.47429 * 214.99386 * 8 6 4 11 11 H 1.48494 * 109.47308 * 334.99719 * 8 6 4 12 12 C 1.53003 * 109.47174 * 119.99537 * 2 1 3 13 13 N 1.46493 * 109.47389 * 300.00239 * 12 2 1 14 14 C 1.34782 * 120.00242 * 180.02562 * 13 12 2 15 15 O 1.21586 * 119.99635 * 5.02875 * 14 13 12 16 16 N 1.34771 * 120.00201 * 185.03481 * 14 13 12 17 17 C 1.46541 * 124.97912 * 354.92595 * 16 14 13 18 18 C 1.53745 * 105.19873 * 180.02562 * 17 16 14 19 19 C 1.51212 * 104.58002 * 359.97438 * 18 17 16 20 20 C 1.38550 * 108.56870 * 0.02562 * 19 18 17 21 21 C 1.39611 * 119.06080 * 179.97438 * 20 19 18 22 22 C 1.37893 * 120.34011 * 359.97438 * 21 20 19 23 23 C 1.38216 * 120.24531 * 359.72889 * 22 21 20 24 24 C 1.38364 * 130.97680 * 179.97438 * 19 18 17 25 25 F 1.35098 * 119.95111 * 0.02562 * 24 19 18 26 26 H 1.09007 * 109.47025 * 295.03454 * 1 2 3 27 27 H 1.08994 * 109.47363 * 55.03790 * 1 2 3 28 28 H 1.09001 * 109.46802 * 175.04306 * 1 2 3 29 29 H 1.09005 * 109.47030 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46940 * 299.99789 * 3 2 1 31 31 H 1.08996 * 109.47141 * 60.00069 * 3 2 1 32 32 H 0.97006 * 119.99841 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47254 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.46808 * 60.00485 * 12 2 1 35 35 H 0.96999 * 120.00499 * 0.02562 * 13 12 2 36 36 H 1.08995 * 110.30006 * 298.95362 * 17 16 14 37 37 H 1.08997 * 110.29677 * 60.99491 * 17 16 14 38 38 H 1.08997 * 110.41128 * 241.22746 * 18 17 16 39 39 H 1.08999 * 110.41370 * 118.77571 * 18 17 16 40 40 H 1.07998 * 119.82614 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.87127 * 179.97438 * 22 21 20 42 42 H 1.08007 * 120.09577 * 180.29480 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6756 -1.5724 -1.1315 6 6 1.6709 -0.2600 -2.4823 7 7 0.9288 0.8190 -2.6041 8 14 2.2352 -1.1822 -4.0057 9 1 1.1754 -2.1319 -4.4302 10 1 2.5002 -0.2145 -5.1004 11 1 3.4785 -1.9334 -3.6974 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8778 -0.4907 3.6696 15 8 2.6504 -1.4226 3.7828 16 7 1.3473 0.0822 4.7681 17 6 0.4921 1.2722 4.7653 18 6 0.1505 1.5266 6.2425 19 6 0.8619 0.4234 6.9932 20 6 1.5323 -0.3718 6.0779 21 6 2.2682 -1.4646 6.5398 22 6 2.3256 -1.7457 7.8886 23 6 1.6590 -0.9439 8.7958 24 6 0.9215 0.1386 8.3459 25 9 0.2643 0.9212 9.2295 26 1 -0.3633 0.4349 0.9312 27 1 -0.3634 0.5888 -0.8421 28 1 -0.3633 -1.0238 -0.0888 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.6743 1.1357 -3.4849 33 1 3.1301 -0.7208 1.2496 34 1 1.6768 -1.7489 1.2493 35 1 0.9937 0.7578 2.3565 36 1 1.0307 2.1238 4.3498 37 1 -0.4159 1.0839 4.1926 38 1 -0.9260 1.4605 6.4006 39 1 0.5226 2.5018 6.5564 40 1 2.7959 -2.0925 5.8372 41 1 2.8968 -2.5932 8.2376 42 1 1.7095 -1.1634 9.8521 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335591849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:31 Heat of formation + Delta-G solvation = -59.141299 kcal Electronic energy + Delta-G solvation = -25079.651982 eV Core-core repulsion = 21359.507627 eV Total energy + Delta-G solvation = -3720.144355 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88206 -42.28753 -40.17424 -38.20809 -37.37206 -35.10013 -33.35494 -32.66471 -30.71095 -29.92182 -27.58178 -27.50519 -26.82866 -24.49682 -24.13215 -22.66150 -21.48021 -20.66267 -19.64204 -18.12735 -17.80974 -17.57766 -17.09651 -16.99749 -16.57181 -16.55197 -16.48466 -15.77536 -15.63411 -15.26673 -14.77615 -14.65004 -14.19097 -14.04166 -13.91521 -13.44081 -13.42507 -13.25851 -13.11504 -12.97203 -12.70320 -12.63808 -12.59494 -12.31246 -12.26153 -12.14950 -11.50917 -11.42641 -11.28830 -11.19810 -10.72043 -10.41956 -10.11452 -9.67633 -8.87950 -8.03696 -6.18588 0.14229 0.15608 1.29902 1.42378 1.46298 1.54446 1.91447 2.44795 2.63607 2.81222 3.20831 3.23801 3.38682 3.47525 3.98379 4.07725 4.10468 4.30337 4.34616 4.39388 4.48747 4.54014 4.67441 4.75016 4.89379 4.91396 4.98554 5.01359 5.03086 5.11018 5.13372 5.17395 5.27124 5.36030 5.43389 5.53759 5.65974 5.67509 5.86337 5.96738 6.12909 6.19317 6.41571 6.75603 6.85310 7.32026 7.49201 8.95855 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.002963 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.782934 B = 9447.771374 C =10050.193714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.165 3.835 13 N -0.714 5.714 14 C 0.707 3.293 15 O -0.611 6.611 16 N -0.571 5.571 17 C 0.087 3.913 18 C -0.070 4.070 19 C -0.187 4.187 20 C 0.175 3.825 21 C -0.168 4.168 22 C -0.057 4.057 23 C -0.175 4.175 24 C 0.131 3.869 25 F -0.138 7.138 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.408 0.592 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.165 0.835 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 2.794 20.803 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.041 3.959 13 N -0.368 5.368 14 C 0.409 3.591 15 O -0.491 6.491 16 N -0.296 5.296 17 C -0.033 4.033 18 C -0.107 4.107 19 C -0.192 4.192 20 C 0.078 3.922 21 C -0.189 4.189 22 C -0.075 4.075 23 C -0.194 4.194 24 C 0.111 3.889 25 F -0.116 7.116 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.245 0.755 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.182 0.818 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.696 2.277 20.512 20.814 hybrid contribution 0.113 -0.177 -1.274 1.291 sum -2.582 2.100 19.239 19.525 Atomic orbital electron populations 1.21656 0.96932 0.99196 0.99830 1.18359 0.93349 0.93040 0.90018 1.21676 0.97974 0.97779 1.00349 1.21263 1.30582 1.13519 0.91492 0.93613 1.25425 0.95125 0.95540 1.00890 1.69915 1.37312 1.22824 1.23646 0.85755 0.78508 0.78624 0.79982 1.20533 1.20883 1.20074 1.21258 0.97118 0.94834 0.82685 1.45259 1.55152 1.33038 1.03398 1.15809 0.80630 0.82022 0.80612 1.90847 1.39801 1.32618 1.85862 1.45103 1.50736 1.30523 1.03231 1.22526 0.95067 0.86362 0.99385 1.21070 1.02008 0.97359 0.90230 1.20046 1.05551 1.01598 0.91970 1.18148 0.96268 0.94837 0.82970 1.21132 1.02374 0.98010 0.97401 1.21037 0.96961 0.99132 0.90393 1.21314 1.00376 0.95360 1.02399 1.16999 0.95760 0.91698 0.84424 1.91485 1.78997 1.73445 1.67704 0.94487 0.91872 0.96286 0.96300 0.91788 0.94561 0.93001 0.94136 0.94060 0.75480 0.88219 0.88227 0.87113 0.87085 0.85962 0.81784 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 8.05 71.98 0.58 -4.51 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.19 8.09 71.98 0.58 -4.60 16 4 C -0.53 -27.59 8.01 25.60 0.21 -27.39 16 5 H 0.05 2.44 7.75 -2.91 -0.02 2.41 16 6 C 0.03 1.57 5.14 84.65 0.44 2.00 16 7 N -0.90 -47.04 9.42 21.44 0.20 -46.83 16 8 Si 0.94 42.09 29.54 68.60 2.03 44.12 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.16 6.92 4.51 86.38 0.39 7.31 16 13 N -0.71 -24.68 4.87 -478.54 -2.33 -27.01 16 14 C 0.71 25.33 8.42 179.05 1.51 26.84 16 15 O -0.61 -26.32 14.54 -3.99 -0.06 -26.38 16 16 N -0.57 -16.19 3.13 -646.31 -2.02 -18.21 16 17 C 0.09 1.64 6.34 86.62 0.55 2.19 16 18 C -0.07 -1.11 6.93 30.26 0.21 -0.90 16 19 C -0.19 -4.12 6.21 -19.60 -0.12 -4.25 16 20 C 0.17 4.81 6.62 38.27 0.25 5.07 16 21 C -0.17 -4.57 9.46 22.52 0.21 -4.36 16 22 C -0.06 -1.10 10.02 22.18 0.22 -0.88 16 23 C -0.17 -3.04 10.04 22.33 0.22 -2.81 16 24 C 0.13 2.66 7.29 22.36 0.16 2.83 16 25 F -0.14 -2.72 17.26 44.97 0.78 -1.94 16 26 H 0.04 1.31 6.74 -2.38 -0.02 1.29 16 27 H 0.06 3.01 6.19 -2.39 -0.01 2.99 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 3.08 6.11 -2.39 -0.01 3.07 16 31 H 0.04 1.29 6.86 -2.39 -0.02 1.28 16 32 H 0.26 13.14 8.31 -92.70 -0.77 12.37 16 33 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 12.05 5.09 -92.71 -0.47 11.58 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.59 8.12 -2.39 -0.02 1.57 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 3.96 6.29 -2.91 -0.02 3.94 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -62.83 340.26 4.55 -58.28 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.57 Total: 19.07 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.39 Total: -1.09 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -4.15 Total: -92.06 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -62.83 4.55 -58.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.863 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds