Wall clock time and date at job start Tue Mar 31 2020 09:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 H 1.09003 * 109.47231 * 55.00003 * 3 2 1 5 5 C 1.52993 * 109.47134 * 294.99608 * 3 2 1 6 6 C 1.53002 * 109.46981 * 174.99487 * 3 2 1 7 7 H 1.09002 * 110.53624 * 305.70107 * 6 3 2 8 8 N 1.47317 * 110.59880 * 68.53044 * 6 3 2 9 9 C 1.34867 * 106.43685 * 118.72658 * 8 6 3 10 10 O 1.21541 * 123.72809 * 179.97438 * 9 8 6 11 11 N 1.33792 * 112.50101 * 359.86480 * 9 8 6 12 12 C 1.40396 * 124.17390 * 180.02562 * 11 9 8 13 13 C 1.40382 * 125.97012 * 185.04329 * 12 11 9 14 14 C 1.35231 * 107.87434 * 179.97438 * 13 12 11 15 15 N 1.34970 * 107.85684 * 359.97438 * 14 13 12 16 16 C 1.46495 * 125.98085 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47026 * 125.00131 * 16 15 14 18 18 H 1.08002 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99682 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99657 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00394 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47083 * 89.99911 * 21 19 17 23 23 H 1.48500 * 109.46918 * 210.00269 * 21 19 17 24 24 H 1.48503 * 109.46958 * 329.99973 * 21 19 17 25 25 N 1.31199 * 125.97114 * 4.72901 * 12 11 9 26 26 C 1.34762 * 111.64692 * 0.08951 * 11 9 8 27 27 O 1.21243 * 127.15645 * 179.97438 * 26 11 9 28 28 H 1.09003 * 109.46789 * 60.00524 * 1 2 3 29 29 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47497 * 300.00233 * 1 2 3 31 31 H 1.09000 * 109.47497 * 239.99767 * 2 1 3 32 32 H 1.09003 * 109.46789 * 119.99475 * 2 1 3 33 33 H 1.08999 * 109.47047 * 60.00311 * 5 3 2 34 34 H 1.09003 * 109.47199 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47384 * 300.00301 * 5 3 2 36 36 H 0.96995 * 126.68986 * 298.65154 * 8 6 3 37 37 H 1.07996 * 126.05768 * 359.94185 * 13 12 11 38 38 H 1.08004 * 126.07555 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47532 * 245.00063 * 16 15 14 40 40 H 1.09004 * 109.46927 * 5.00125 * 16 15 14 41 41 H 0.97001 * 120.00157 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4444 0.1259 7 1 3.8770 0.8735 1.0004 8 7 4.1863 0.9032 -1.0952 9 6 4.9460 1.8928 -1.6075 10 8 5.6032 1.7818 -2.6239 11 7 4.8939 3.0104 -0.8739 12 6 5.5898 4.1899 -1.1831 13 6 5.6422 5.3480 -0.3915 14 6 6.4115 6.2556 -1.0342 15 7 6.8328 5.6977 -2.1887 16 6 7.6911 6.3356 -3.1899 17 6 8.8951 5.4662 -3.4466 18 1 9.0091 4.5318 -2.9171 19 6 9.8509 5.8638 -4.3573 20 7 10.9013 5.1048 -4.5816 21 14 9.6539 7.4803 -5.2725 22 1 10.2974 8.5703 -4.4960 23 1 10.2983 7.3756 -6.6063 24 1 8.2094 7.7799 -5.4428 25 7 6.3095 4.4003 -2.2598 26 6 4.0921 2.8636 0.1993 27 8 3.8445 3.6940 1.0473 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5490 2.1252 -1.3969 34 1 1.9990 3.1541 -1.3075 35 1 2.0699 1.5874 -2.1492 36 1 4.0715 0.0107 -1.4572 37 1 5.1542 5.4891 0.5615 38 1 6.6477 7.2501 -0.6852 39 1 7.1330 6.4660 -4.1171 40 1 8.0172 7.3085 -2.8222 41 1 11.5740 5.3847 -5.2220 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348584268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:43 Heat of formation + Delta-G solvation = 15.081971 kcal Electronic energy + Delta-G solvation = -25368.118893 eV Core-core repulsion = 21671.113062 eV Total energy + Delta-G solvation = -3697.005831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.87601 -41.95992 -39.83371 -38.29027 -36.96256 -35.72420 -34.84378 -33.15639 -31.17418 -30.82002 -29.37259 -28.37548 -25.89498 -25.18417 -23.86555 -23.19792 -21.66606 -21.11009 -20.53295 -19.26732 -18.93591 -18.36076 -18.06609 -17.38563 -16.84591 -16.70410 -16.34162 -15.91670 -15.73552 -15.52492 -15.28496 -15.01632 -14.91390 -14.46428 -14.25848 -14.11531 -13.94888 -13.19778 -13.02487 -12.99256 -12.65880 -12.53860 -12.44329 -12.32224 -12.18527 -11.87015 -11.80706 -11.68447 -11.52545 -11.45973 -11.13123 -10.88912 -10.54335 -10.04123 -9.42757 -8.39466 -6.50868 0.40604 0.67873 0.93792 1.33937 1.38603 1.43683 1.48360 1.85434 2.15544 2.25544 2.27618 2.79951 2.92557 3.40369 3.63031 3.81769 3.88738 3.96716 4.20927 4.30096 4.36090 4.52231 4.58188 4.60380 4.67651 4.69939 4.70791 4.80398 4.91227 5.02116 5.10612 5.13774 5.19688 5.28789 5.43350 5.52536 5.55983 5.74932 5.89339 5.92744 6.24340 6.32223 6.54543 6.80674 7.03407 7.11602 8.78493 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.003346 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.348702 B = 8365.319042 C = 8803.191438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.081 4.081 4 H 0.110 0.890 5 C -0.157 4.157 6 C 0.115 3.885 7 H 0.175 0.825 8 N -0.693 5.693 9 C 0.688 3.312 10 O -0.562 6.562 11 N -0.496 5.496 12 C 0.244 3.756 13 C -0.281 4.281 14 C 0.073 3.927 15 N -0.342 5.342 16 C 0.239 3.761 17 C -0.551 4.551 18 H 0.019 0.981 19 C 0.012 3.988 20 N -0.944 5.944 21 Si 0.961 3.039 22 H -0.246 1.246 23 H -0.281 1.281 24 H -0.239 1.239 25 N -0.312 5.312 26 C 0.527 3.473 27 O -0.469 6.469 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.052 0.948 36 H 0.455 0.545 37 H 0.175 0.825 38 H 0.226 0.774 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.842 -6.080 13.323 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.128 0.872 5 C -0.214 4.214 6 C 0.008 3.992 7 H 0.192 0.808 8 N -0.361 5.361 9 C 0.388 3.612 10 O -0.434 6.434 11 N -0.240 5.240 12 C -0.009 4.009 13 C -0.312 4.312 14 C -0.074 4.074 15 N -0.124 5.124 16 C 0.119 3.881 17 C -0.589 4.589 18 H 0.037 0.963 19 C -0.187 4.187 20 N -0.583 5.583 21 Si 0.781 3.219 22 H -0.170 1.170 23 H -0.207 1.207 24 H -0.162 1.162 25 N -0.141 5.141 26 C 0.316 3.684 27 O -0.337 6.337 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.304 0.696 37 H 0.192 0.808 38 H 0.243 0.757 39 H 0.062 0.938 40 H 0.111 0.889 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.940 -6.097 11.950 25.716 hybrid contribution 0.512 0.234 -0.313 0.644 sum -21.427 -5.863 11.637 25.078 Atomic orbital electron populations 1.21817 0.94967 1.02304 1.02138 1.21561 0.96722 0.92977 1.03772 1.21476 0.88605 1.00021 0.99927 0.87207 1.21959 1.03200 0.98794 0.97486 1.22513 0.96785 0.88733 0.91209 0.80791 1.45381 1.48206 1.14847 1.27624 1.16218 0.81133 0.81194 0.82702 1.91113 1.45513 1.81623 1.25153 1.43281 1.43346 1.10424 1.26901 1.19336 0.97903 0.87942 0.95765 1.21372 1.12735 0.92059 1.05080 1.23364 0.96105 1.01679 0.86276 1.48826 1.37267 1.08468 1.17835 1.19970 0.87555 0.93470 0.87091 1.21223 1.05561 1.06535 1.25559 0.96262 1.26015 0.93729 1.02284 0.96669 1.70072 1.11921 1.40472 1.35817 0.85549 0.80555 0.77785 0.78042 1.17025 1.20697 1.16204 1.77769 1.16040 0.98711 1.21571 1.21673 0.76421 0.91627 0.78717 1.90743 1.57667 1.48812 1.36459 0.92964 0.91859 0.92101 0.91203 0.89155 0.89705 0.95647 0.92864 0.69600 0.80762 0.75721 0.93766 0.88920 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.67 71.98 0.70 -0.30 16 2 C -0.11 -0.68 5.28 30.59 0.16 -0.52 16 3 C -0.08 -0.89 2.29 -10.79 -0.02 -0.91 16 4 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.16 -2.55 8.41 71.98 0.61 -1.94 16 6 C 0.12 1.73 3.40 44.37 0.15 1.88 16 7 H 0.18 1.27 8.14 -2.39 -0.02 1.25 16 8 N -0.69 -13.65 5.05 -459.10 -2.32 -15.96 16 9 C 0.69 23.97 8.49 179.33 1.52 25.49 16 10 O -0.56 -26.53 16.83 -3.85 -0.06 -26.59 16 11 N -0.50 -17.53 2.83 -599.02 -1.70 -19.23 16 12 C 0.24 10.50 7.67 133.24 1.02 11.52 16 13 C -0.28 -10.25 9.98 22.10 0.22 -10.03 16 14 C 0.07 2.61 11.44 83.52 0.96 3.57 16 15 N -0.34 -15.91 3.67 -351.85 -1.29 -17.20 16 16 C 0.24 11.42 5.33 85.63 0.46 11.87 16 17 C -0.55 -33.41 9.79 25.60 0.25 -33.16 16 18 H 0.02 1.38 8.06 -2.91 -0.02 1.35 16 19 C 0.01 0.68 5.47 84.65 0.46 1.14 16 20 N -0.94 -60.54 13.96 21.45 0.30 -60.24 16 21 Si 0.96 41.82 27.47 68.60 1.88 43.71 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 25 N -0.31 -16.19 11.33 -54.32 -0.62 -16.80 16 26 C 0.53 13.80 6.54 87.94 0.58 14.38 16 27 O -0.47 -13.32 15.90 -2.91 -0.05 -13.36 16 28 H 0.05 0.41 6.57 -2.39 -0.02 0.39 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.41 7.75 -2.39 -0.02 0.39 16 32 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 1.08 6.56 -2.39 -0.02 1.07 16 34 H 0.02 0.55 7.37 -2.39 -0.02 0.53 16 35 H 0.05 0.97 7.45 -2.39 -0.02 0.95 16 36 H 0.46 6.12 8.64 -92.71 -0.80 5.32 16 37 H 0.18 5.48 6.69 -2.91 -0.02 5.46 16 38 H 0.23 5.35 8.06 -2.91 -0.02 5.33 16 39 H 0.04 2.10 7.20 -2.39 -0.02 2.08 16 40 H 0.09 3.65 7.50 -2.39 -0.02 3.64 16 41 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -90.46 342.41 3.41 -87.05 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.21 Total: 15.64 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 7.05 Total: 22.99 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -5.62 Total: -129.44 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.11 Total: -39.95 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.71 kcal Total: -90.46 3.41 -87.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348584268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.132 kcal (2) G-P(sol) polarization free energy of solvation -90.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds