Wall clock time and date at job start Tue Mar 31 2020 09:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46891 * 2 1 4 4 N 1.46502 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.34528 * 126.69284 * 90.02158 * 4 3 2 6 6 O 1.21533 * 123.76761 * 0.23468 * 5 4 3 7 7 N 1.33794 * 112.45680 * 179.97438 * 5 4 3 8 8 C 1.40400 * 124.17356 * 180.02562 * 7 5 4 9 9 C 1.40379 * 125.97068 * 4.69959 * 8 7 5 10 10 C 1.35238 * 107.87098 * 179.82146 * 9 8 7 11 11 N 1.34968 * 107.85531 * 0.43358 * 10 9 8 12 12 C 1.46498 * 125.98049 * 179.69423 * 11 10 9 13 13 C 1.50700 * 109.47546 * 125.01082 * 12 11 10 14 14 H 1.08001 * 119.99416 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00342 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46976 * 60.00359 * 17 15 13 19 19 H 1.48497 * 109.47251 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47066 * 300.00757 * 17 15 13 21 21 N 1.31194 * 125.96707 * 185.00048 * 8 7 5 22 22 C 1.34766 * 111.64801 * 0.02562 * 7 5 4 23 23 O 1.21241 * 127.15996 * 179.97438 * 22 7 5 24 24 C 1.47312 * 126.68837 * 269.98287 * 4 3 2 25 25 H 1.09008 * 110.73220 * 61.44750 * 24 4 3 26 26 C 1.53001 * 110.60279 * 298.56013 * 24 4 3 27 27 H 1.08998 * 109.46873 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47057 * 299.99936 * 1 2 3 29 29 H 1.08998 * 109.47032 * 60.00343 * 1 2 3 30 30 H 1.09004 * 109.47543 * 240.00272 * 2 1 3 31 31 H 1.08998 * 109.47032 * 119.99657 * 2 1 3 32 32 H 1.09002 * 109.47008 * 60.00329 * 3 2 1 33 33 H 1.09003 * 109.47443 * 299.99838 * 3 2 1 34 34 H 1.07998 * 126.06262 * 359.95571 * 9 8 7 35 35 H 1.07997 * 126.07525 * 180.17410 * 10 9 8 36 36 H 1.09008 * 109.47096 * 245.01184 * 12 11 10 37 37 H 1.09001 * 109.47143 * 5.00807 * 12 11 10 38 38 H 0.96993 * 120.00709 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.46871 * 304.37540 * 26 24 4 40 40 H 1.09001 * 109.46734 * 64.37392 * 26 24 4 41 41 H 1.08992 * 109.47355 * 184.37253 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 1.4432 -1.0797 6 8 3.9014 1.4479 -2.2248 7 7 5.6053 1.4436 -0.7512 8 6 6.6550 1.4448 -1.6836 9 6 6.5194 1.5388 -3.0777 10 6 7.7588 1.5094 -3.6181 11 7 8.6475 1.3913 -2.6092 12 6 10.1038 1.3160 -2.7494 13 6 10.7455 2.3917 -1.9114 14 1 10.1300 3.0644 -1.3327 15 6 12.1183 2.5170 -1.8836 16 7 12.8678 1.6981 -2.5888 17 14 12.9136 3.8509 -0.8455 18 1 12.5423 3.6567 0.5792 19 1 14.3898 3.7745 -0.9875 20 1 12.4409 5.1821 -1.3032 21 7 7.9336 1.3527 -1.4046 22 6 5.7798 1.4428 0.5851 23 8 6.8326 1.4425 1.1863 24 6 4.3856 1.4428 1.1803 25 1 4.2257 0.5474 1.7811 26 6 4.1585 2.7008 2.0210 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.5903 1.6222 -3.6219 35 1 7.9952 1.5657 -4.6703 36 1 10.4511 0.3386 -2.4141 37 1 10.3760 1.4592 -3.7951 38 1 13.8335 1.7864 -2.5696 39 1 4.2988 3.5842 1.3982 40 1 3.1435 2.6939 2.4184 41 1 4.8713 2.7205 2.8454 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348584756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:04 Heat of formation + Delta-G solvation = 43.030093 kcal Electronic energy + Delta-G solvation = -25194.435994 eV Core-core repulsion = 21498.642085 eV Total energy + Delta-G solvation = -3695.793909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.57384 -40.30207 -38.58466 -36.78472 -35.71362 -34.13061 -33.30979 -31.21770 -30.81057 -29.50005 -27.63656 -26.40543 -25.00557 -23.40766 -22.73907 -21.71406 -21.33629 -19.80457 -19.49084 -17.52244 -17.03941 -16.59240 -16.54167 -15.96225 -15.79221 -15.16444 -14.96481 -14.71021 -14.48016 -14.29838 -13.93223 -13.70127 -13.24071 -12.94903 -12.70651 -12.66403 -12.57116 -12.41024 -12.27961 -12.01030 -11.79984 -11.71288 -11.12037 -11.04577 -10.86251 -10.66923 -10.60161 -10.30139 -10.21552 -9.73689 -9.55314 -9.22335 -8.61813 -8.35555 -7.70022 -6.23170 -4.27897 1.68931 1.83868 2.47582 2.74750 2.92024 3.28611 3.31209 3.36768 3.56661 3.69233 3.96245 4.34024 4.35073 4.52814 4.61584 4.71424 4.86934 4.93386 5.11805 5.16228 5.24485 5.29257 5.35005 5.37422 5.39490 5.61061 5.69109 5.73460 5.82899 5.89823 6.00963 6.29598 6.31970 6.49716 6.80806 7.00670 7.03646 7.29533 7.53076 7.70102 7.86252 7.95374 8.11551 8.48590 8.79867 9.37782 10.85880 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.003438 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.036746 B = 8141.983746 C = 8962.459712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.152 3.848 4 N -0.622 5.622 5 C 0.710 3.290 6 O -0.527 6.527 7 N -0.488 5.488 8 C 0.246 3.754 9 C -0.277 4.277 10 C 0.057 3.943 11 N -0.314 5.314 12 C 0.258 3.742 13 C -0.529 4.529 14 H 0.069 0.931 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.908 3.092 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.260 5.260 22 C 0.514 3.486 23 O -0.427 6.427 24 C 0.095 3.905 25 H 0.126 0.874 26 C -0.150 4.150 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.268 0.732 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.556 -1.319 6.109 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.032 3.968 4 N -0.362 5.362 5 C 0.412 3.588 6 O -0.399 6.399 7 N -0.230 5.230 8 C -0.005 4.005 9 C -0.309 4.309 10 C -0.093 4.093 11 N -0.097 5.097 12 C 0.140 3.860 13 C -0.568 4.568 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.534 5.534 17 Si 0.735 3.265 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.090 5.090 22 C 0.299 3.701 23 O -0.291 6.291 24 C -0.012 4.012 25 H 0.144 0.856 26 C -0.208 4.208 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.173 0.827 35 H 0.191 0.809 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.039 -1.477 6.666 23.072 hybrid contribution 0.020 0.651 -0.141 0.667 sum -22.019 -0.826 6.525 22.980 Atomic orbital electron populations 1.21679 0.94681 1.02230 1.02055 1.21992 0.96411 0.96992 1.03159 1.21413 0.74077 0.97424 1.03905 1.47716 1.06092 1.77598 1.04795 1.15555 0.79906 0.77945 0.85425 1.90927 1.76532 1.54014 1.18462 1.42894 1.05775 1.66726 1.07582 1.18756 0.87011 1.06617 0.88102 1.21173 0.98681 1.19905 0.91128 1.22534 0.88996 1.02011 0.95773 1.49354 1.08658 1.50405 1.01284 1.19826 0.67454 0.99485 0.99189 1.21205 0.91749 1.15426 1.28396 0.91304 1.24923 0.96779 0.96617 0.95619 1.69901 1.05710 1.37312 1.40477 0.86377 0.77741 0.81510 0.80861 1.19805 1.21015 1.20032 1.77665 1.00653 1.24346 1.06320 1.20960 0.91387 0.75997 0.81802 1.90899 1.30341 1.42538 1.65297 1.22116 0.86661 1.03013 0.89414 0.85623 1.21943 1.03652 0.95172 1.00028 0.92275 0.92511 0.92294 0.91096 0.91556 0.89495 0.89130 0.82698 0.80871 0.93457 0.92226 0.92246 0.91294 0.90391 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.15 -0.99 6.26 -26.73 -0.17 -1.16 16 3 C 0.15 1.11 6.02 -4.04 -0.02 1.08 16 4 N -0.62 -6.72 2.74 -172.39 -0.47 -7.19 16 5 C 0.71 11.05 8.27 -88.02 -0.73 10.32 16 6 O -0.53 -9.28 15.15 5.34 0.08 -9.20 16 7 N -0.49 -8.83 2.83 -65.79 -0.19 -9.01 16 8 C 0.25 5.32 7.68 -154.18 -1.18 4.13 16 9 C -0.28 -5.50 9.88 -39.84 -0.39 -5.90 16 10 C 0.06 1.12 11.44 -17.24 -0.20 0.92 16 11 N -0.31 -7.48 3.67 -62.56 -0.23 -7.71 16 12 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 13 C -0.53 -15.10 9.24 -34.44 -0.32 -15.41 16 14 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 16 N -0.90 -25.66 13.29 55.43 0.74 -24.93 16 17 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 N -0.26 -6.44 11.57 31.48 0.36 -6.07 16 22 C 0.51 8.42 7.61 -10.55 -0.08 8.34 16 23 O -0.43 -8.62 17.17 5.59 0.10 -8.52 16 24 C 0.10 0.97 4.05 -68.20 -0.28 0.69 16 25 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 26 C -0.15 -1.15 9.40 37.16 0.35 -0.80 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.39 7.48 -51.93 -0.39 0.00 16 33 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 34 H 0.16 2.87 6.51 -52.49 -0.34 2.53 16 35 H 0.17 2.70 8.06 -52.49 -0.42 2.27 16 36 H 0.05 1.29 8.14 -51.92 -0.42 0.87 16 37 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.37 7.60 -51.93 -0.39 -0.02 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -34.84 353.89 -7.81 -42.65 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.73 Total: -2.36 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -2.78 Total: 10.13 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.21 Total: -54.91 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.18 Total: -17.73 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.84 -7.81 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348584756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.680 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds