Wall clock time and date at job start Tue Mar 31 2020 08:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47655 * 2 1 4 4 C 1.53003 * 109.46891 * 240.00098 * 2 1 3 5 5 C 1.52997 * 109.47225 * 120.00650 * 2 1 3 6 6 H 1.09004 * 110.53639 * 181.37516 * 5 2 1 7 7 N 1.47310 * 110.60432 * 58.54137 * 5 2 1 8 8 C 1.34527 * 106.62076 * 241.32199 * 7 5 2 9 9 O 1.21538 * 123.76716 * 179.97438 * 8 7 5 10 10 N 1.33788 * 112.45828 * 359.97438 * 8 7 5 11 11 C 1.40397 * 124.17646 * 179.97438 * 10 8 7 12 12 C 1.40375 * 125.97195 * 5.01686 * 11 10 8 13 13 C 1.35232 * 107.87492 * 180.02562 * 12 11 10 14 14 N 1.34970 * 107.85434 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.98004 * 180.26596 * 14 13 12 16 16 C 1.50694 * 109.47357 * 124.71863 * 15 14 13 17 17 H 1.08004 * 119.99574 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00608 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99440 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00594 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46765 * 59.99952 * 20 18 16 22 22 H 1.48499 * 109.47161 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46956 * 300.00119 * 20 18 16 24 24 N 1.31194 * 125.96730 * 185.04684 * 11 10 8 25 25 C 1.34770 * 111.64278 * 0.23167 * 10 8 7 26 26 O 1.21238 * 127.15361 * 179.73756 * 25 10 8 27 27 H 1.09003 * 109.46997 * 300.00060 * 1 2 3 28 28 H 1.09002 * 109.47665 * 59.99522 * 1 2 3 29 29 H 1.08996 * 109.47691 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47417 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46974 * 300.00901 * 3 2 1 32 32 H 1.09004 * 109.46227 * 59.99980 * 3 2 1 33 33 H 1.09002 * 109.47682 * 300.00445 * 4 2 1 34 34 H 1.09000 * 109.47093 * 60.00389 * 4 2 1 35 35 H 1.09002 * 109.47532 * 179.97438 * 4 2 1 36 36 H 0.97010 * 126.68583 * 61.28561 * 7 5 2 37 37 H 1.08001 * 126.06093 * 0.02562 * 12 11 10 38 38 H 1.07999 * 126.07536 * 180.02562 * 13 12 11 39 39 H 1.09004 * 109.46930 * 244.71811 * 15 14 13 40 40 H 1.08997 * 109.47093 * 4.71362 * 15 14 13 41 41 H 0.97007 * 120.00088 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7214 1.2491 6 1 3.1295 -0.7103 1.2790 7 7 1.5343 -2.1043 1.2919 8 6 0.7928 -2.2085 2.4095 9 8 0.2244 -3.2272 2.7505 10 7 0.7511 -1.0655 3.1036 11 6 0.0483 -0.8992 4.3075 12 6 -0.6258 -1.9070 5.0149 13 6 -1.1731 -1.3458 6.1168 14 7 -0.8596 -0.0330 6.1117 15 6 -1.2478 0.9485 7.1277 16 6 -0.0160 1.6331 7.6615 17 1 0.9587 1.3636 7.2822 18 6 -0.1331 2.6026 8.6347 19 7 -1.3198 2.9296 9.0976 20 14 1.3939 3.4506 9.2970 21 1 2.0980 4.1405 8.1862 22 1 1.0003 4.4456 10.3266 23 1 2.2973 2.4403 9.9039 24 7 -0.0936 0.2256 4.9678 25 6 1.4624 -0.0920 2.5014 26 8 1.6104 1.0493 2.8825 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6765 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7209 -1.2496 36 1 1.7027 -2.8034 0.6407 37 1 -0.6951 -2.9464 4.7296 38 1 -1.7567 -1.8573 6.8679 39 1 -1.9111 1.6899 6.6819 40 1 -1.7645 0.4424 7.9431 41 1 -1.4023 3.6120 9.7821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348596413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:17 Heat of formation + Delta-G solvation = 38.550997 kcal Electronic energy + Delta-G solvation = -25763.919491 eV Core-core repulsion = 22067.931354 eV Total energy + Delta-G solvation = -3695.988137 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.76166 -40.34582 -38.68404 -37.49262 -35.74197 -34.22349 -33.23694 -31.06905 -29.49749 -27.99322 -27.62654 -27.17371 -26.76612 -23.87617 -23.16418 -21.98581 -20.22151 -19.43837 -19.31298 -17.81735 -17.22163 -16.63787 -16.57367 -16.11291 -15.51302 -15.21080 -14.88380 -14.82225 -14.38328 -14.30315 -13.96957 -13.53738 -13.38938 -12.95194 -12.58455 -12.55515 -12.37193 -12.31099 -11.94086 -11.86449 -11.73124 -11.36684 -11.17576 -11.07204 -10.87208 -10.67996 -10.60583 -10.28215 -10.18990 -9.74255 -9.61342 -9.54175 -8.62380 -8.36818 -7.71215 -6.23759 -4.28499 1.66731 1.97902 2.46880 2.91228 2.97184 3.28251 3.30969 3.36379 3.55208 3.68694 3.92247 4.14829 4.34108 4.38093 4.65848 4.84795 5.02748 5.09592 5.13940 5.27421 5.34537 5.38467 5.48317 5.57618 5.61912 5.67089 5.71308 5.83883 5.95778 6.01074 6.15572 6.28591 6.43803 6.65384 6.78245 6.99195 7.01690 7.27540 7.54174 7.69496 7.85661 7.94418 8.12779 8.47638 8.79217 9.37254 10.85279 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.004051 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.871390 B = 6910.489378 C = 7866.685106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 C -0.152 4.152 4 C -0.139 4.139 5 C 0.104 3.896 6 H 0.128 0.872 7 N -0.721 5.721 8 C 0.712 3.288 9 O -0.529 6.529 10 N -0.487 5.487 11 C 0.246 3.754 12 C -0.278 4.278 13 C 0.057 3.943 14 N -0.314 5.314 15 C 0.258 3.742 16 C -0.530 4.530 17 H 0.069 0.931 18 C 0.064 3.936 19 N -0.896 5.896 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.259 5.259 25 C 0.517 3.483 26 O -0.423 6.423 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.440 0.560 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -9.030 -19.467 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C -0.210 4.210 4 C -0.197 4.197 5 C -0.005 4.005 6 H 0.146 0.854 7 N -0.386 5.386 8 C 0.412 3.588 9 O -0.401 6.401 10 N -0.229 5.229 11 C -0.005 4.005 12 C -0.309 4.309 13 C -0.093 4.093 14 N -0.097 5.097 15 C 0.141 3.859 16 C -0.568 4.568 17 H 0.087 0.913 18 C -0.139 4.139 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.200 1.200 24 N -0.089 5.089 25 C 0.302 3.698 26 O -0.287 6.287 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.285 0.715 37 H 0.173 0.827 38 H 0.191 0.809 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.374 -7.416 -18.707 20.829 hybrid contribution 0.643 -0.671 0.171 0.945 sum 6.017 -8.087 -18.537 21.100 Atomic orbital electron populations 1.21970 0.93482 1.02495 1.02848 1.20727 0.96801 0.96392 0.92608 1.22002 1.01428 0.93822 1.03758 1.21860 1.01255 1.00174 0.96383 1.22252 1.01410 0.82179 0.94675 0.85447 1.45416 1.54278 1.13364 1.25565 1.15526 0.79988 0.82636 0.80614 1.90973 1.48227 1.29565 1.71374 1.42831 1.46116 1.13278 1.20722 1.18737 0.99653 0.94403 0.87708 1.21174 1.10679 1.00725 0.98357 1.22534 1.01497 0.85786 0.99487 1.49352 1.35778 1.07634 1.16893 1.19825 0.97253 0.86081 0.82790 1.21204 0.92916 1.21256 1.21427 0.91303 1.24919 0.96824 0.96217 0.95941 1.69907 1.22494 1.31825 1.29165 0.86381 0.82384 0.79168 0.78584 1.19813 1.21008 1.20021 1.77660 1.14890 1.18655 0.97699 1.20839 0.78455 0.85552 0.84940 1.90874 1.55645 1.15277 1.66897 0.92390 0.91442 0.92093 0.92022 0.91760 0.90401 0.92386 0.91552 0.91980 0.71528 0.82699 0.80878 0.93461 0.92236 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.96 37.15 0.30 -1.19 16 2 C -0.06 -0.53 0.64 -154.51 -0.10 -0.63 16 3 C -0.15 -1.36 8.23 37.16 0.31 -1.05 16 4 C -0.14 -0.74 8.34 37.16 0.31 -0.43 16 5 C 0.10 1.03 2.95 -68.21 -0.20 0.83 16 6 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 7 N -0.72 -6.90 5.12 -59.19 -0.30 -7.21 16 8 C 0.71 10.53 8.52 -88.02 -0.75 9.78 16 9 O -0.53 -9.09 15.49 5.33 0.08 -9.01 16 10 N -0.49 -8.47 2.83 -65.80 -0.19 -8.66 16 11 C 0.25 5.19 7.68 -154.18 -1.18 4.01 16 12 C -0.28 -5.42 9.88 -39.85 -0.39 -5.82 16 13 C 0.06 1.10 11.44 -17.24 -0.20 0.91 16 14 N -0.31 -7.36 3.67 -62.56 -0.23 -7.59 16 15 C 0.26 6.57 6.26 -5.19 -0.03 6.54 16 16 C -0.53 -14.98 9.24 -34.44 -0.32 -15.30 16 17 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.90 -25.51 13.29 55.43 0.74 -24.78 16 20 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 24 N -0.26 -6.28 11.57 31.48 0.36 -5.92 16 25 C 0.52 8.18 6.01 -10.55 -0.06 8.11 16 26 O -0.42 -8.16 15.21 5.59 0.09 -8.07 16 27 H 0.06 0.75 7.15 -51.93 -0.37 0.38 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 7.62 -51.93 -0.40 0.20 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.94 6.09 -51.93 -0.32 0.62 16 33 H 0.06 0.26 7.20 -51.93 -0.37 -0.11 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.44 2.76 8.25 -40.82 -0.34 2.43 16 37 H 0.16 2.82 6.52 -52.49 -0.34 2.48 16 38 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 39 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -34.00 342.72 -7.21 -41.21 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.48 Total: 0.65 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.42 Total: 7.45 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.38 Total: -54.15 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.17 Total: -17.08 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.00 -7.21 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348596413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.765 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds