Wall clock time and date at job start Tue Mar 31 2020 08:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47655 * 2 1 4 4 C 1.53003 * 109.46891 * 240.00098 * 2 1 3 5 5 C 1.52997 * 109.47225 * 120.00650 * 2 1 3 6 6 H 1.09004 * 110.53639 * 181.37516 * 5 2 1 7 7 N 1.47310 * 110.60432 * 58.54137 * 5 2 1 8 8 C 1.34527 * 106.62076 * 241.32199 * 7 5 2 9 9 O 1.21538 * 123.76716 * 179.97438 * 8 7 5 10 10 N 1.33788 * 112.45828 * 359.97438 * 8 7 5 11 11 C 1.40397 * 124.17646 * 179.97438 * 10 8 7 12 12 C 1.40375 * 125.97195 * 5.01686 * 11 10 8 13 13 C 1.35232 * 107.87492 * 180.02562 * 12 11 10 14 14 N 1.34970 * 107.85434 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.98004 * 180.26596 * 14 13 12 16 16 C 1.50694 * 109.47357 * 124.71863 * 15 14 13 17 17 H 1.08004 * 119.99574 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00608 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99440 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00594 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46765 * 59.99952 * 20 18 16 22 22 H 1.48499 * 109.47161 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46956 * 300.00119 * 20 18 16 24 24 N 1.31194 * 125.96730 * 185.04684 * 11 10 8 25 25 C 1.34770 * 111.64278 * 0.23167 * 10 8 7 26 26 O 1.21238 * 127.15361 * 179.73756 * 25 10 8 27 27 H 1.09003 * 109.46997 * 300.00060 * 1 2 3 28 28 H 1.09002 * 109.47665 * 59.99522 * 1 2 3 29 29 H 1.08996 * 109.47691 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47417 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46974 * 300.00901 * 3 2 1 32 32 H 1.09004 * 109.46227 * 59.99980 * 3 2 1 33 33 H 1.09002 * 109.47682 * 300.00445 * 4 2 1 34 34 H 1.09000 * 109.47093 * 60.00389 * 4 2 1 35 35 H 1.09002 * 109.47532 * 179.97438 * 4 2 1 36 36 H 0.97010 * 126.68583 * 61.28561 * 7 5 2 37 37 H 1.08001 * 126.06093 * 0.02562 * 12 11 10 38 38 H 1.07999 * 126.07536 * 180.02562 * 13 12 11 39 39 H 1.09004 * 109.46930 * 244.71811 * 15 14 13 40 40 H 1.08997 * 109.47093 * 4.71362 * 15 14 13 41 41 H 0.97007 * 120.00088 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7214 1.2491 6 1 3.1295 -0.7103 1.2790 7 7 1.5343 -2.1043 1.2919 8 6 0.7928 -2.2085 2.4095 9 8 0.2244 -3.2272 2.7505 10 7 0.7511 -1.0655 3.1036 11 6 0.0483 -0.8992 4.3075 12 6 -0.6258 -1.9070 5.0149 13 6 -1.1731 -1.3458 6.1168 14 7 -0.8596 -0.0330 6.1117 15 6 -1.2478 0.9485 7.1277 16 6 -0.0160 1.6331 7.6615 17 1 0.9587 1.3636 7.2822 18 6 -0.1331 2.6026 8.6347 19 7 -1.3198 2.9296 9.0976 20 14 1.3939 3.4506 9.2970 21 1 2.0980 4.1405 8.1862 22 1 1.0003 4.4456 10.3266 23 1 2.2973 2.4403 9.9039 24 7 -0.0936 0.2256 4.9678 25 6 1.4624 -0.0920 2.5014 26 8 1.6104 1.0493 2.8825 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6765 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7209 -1.2496 36 1 1.7027 -2.8034 0.6407 37 1 -0.6951 -2.9464 4.7296 38 1 -1.7567 -1.8573 6.8679 39 1 -1.9111 1.6899 6.6819 40 1 -1.7645 0.4424 7.9431 41 1 -1.4023 3.6120 9.7821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348596413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:17 Heat of formation + Delta-G solvation = 15.537331 kcal Electronic energy + Delta-G solvation = -25764.917439 eV Core-core repulsion = 22067.931354 eV Total energy + Delta-G solvation = -3696.986085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.94601 -41.95337 -39.91583 -38.47353 -37.01232 -35.79470 -34.84052 -32.85300 -31.15192 -29.11904 -28.49454 -28.26290 -27.89853 -25.60133 -24.40591 -23.58222 -21.72012 -20.73692 -20.28700 -19.04878 -18.71744 -18.34852 -18.06094 -17.32518 -16.89176 -16.61214 -16.27003 -15.91969 -15.81049 -15.59337 -15.29394 -14.65646 -14.53895 -14.28933 -14.23485 -14.02802 -13.72379 -13.14959 -13.04334 -12.99956 -12.77378 -12.63630 -12.57985 -12.36651 -12.26778 -12.13606 -11.92013 -11.78456 -11.65240 -11.58143 -11.01245 -10.75754 -10.53376 -10.03990 -9.40701 -8.37417 -6.50559 0.46256 0.69254 0.91009 1.34365 1.37529 1.44348 1.47797 1.89510 2.09464 2.26253 2.32896 2.80601 2.95266 3.34792 3.59782 3.77295 3.91113 3.95232 4.19148 4.30277 4.34791 4.42165 4.66212 4.72314 4.73929 4.85380 4.88606 4.94243 4.98670 4.99844 5.03358 5.08060 5.22998 5.38497 5.47682 5.51384 5.54099 5.72165 5.77171 5.94590 6.17090 6.33455 6.58425 6.81729 7.01749 7.19109 8.70878 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.004051 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.871390 B = 6910.489378 C = 7866.685106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.057 4.057 3 C -0.152 4.152 4 C -0.134 4.134 5 C 0.119 3.881 6 H 0.168 0.832 7 N -0.686 5.686 8 C 0.709 3.291 9 O -0.555 6.555 10 N -0.500 5.500 11 C 0.247 3.753 12 C -0.278 4.278 13 C 0.067 3.933 14 N -0.339 5.339 15 C 0.272 3.728 16 C -0.551 4.551 17 H 0.047 0.953 18 C 0.023 3.977 19 N -0.918 5.918 20 Si 0.968 3.032 21 H -0.279 1.279 22 H -0.268 1.268 23 H -0.267 1.267 24 N -0.315 5.315 25 C 0.505 3.495 26 O -0.468 6.468 27 H 0.015 0.985 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.460 0.540 37 H 0.172 0.828 38 H 0.215 0.785 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -10.534 -21.376 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 C -0.210 4.210 4 C -0.191 4.191 5 C 0.011 3.989 6 H 0.185 0.815 7 N -0.353 5.353 8 C 0.409 3.591 9 O -0.429 6.429 10 N -0.243 5.243 11 C -0.006 4.006 12 C -0.309 4.309 13 C -0.081 4.081 14 N -0.121 5.121 15 C 0.154 3.846 16 C -0.589 4.589 17 H 0.065 0.935 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.792 3.208 21 H -0.204 1.204 22 H -0.193 1.193 23 H -0.192 1.192 24 N -0.144 5.144 25 C 0.293 3.707 26 O -0.335 6.335 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.310 0.690 37 H 0.189 0.811 38 H 0.232 0.768 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.034 -8.963 -20.680 23.611 hybrid contribution 0.096 -0.233 0.673 0.718 sum 7.130 -9.196 -20.007 23.145 Atomic orbital electron populations 1.21989 0.94988 1.02192 1.01614 1.20771 0.95498 0.96360 0.93172 1.21992 1.02564 0.93911 1.02486 1.21856 1.02546 1.00369 0.94297 1.22454 1.03005 0.81387 0.92078 0.81548 1.45233 1.52263 1.13786 1.23984 1.15651 0.80428 0.81551 0.81477 1.90948 1.49564 1.30132 1.72275 1.43254 1.46127 1.14880 1.20008 1.19179 0.98853 0.93936 0.88603 1.21415 1.10308 1.01085 0.98115 1.23254 1.00510 0.84271 1.00092 1.49104 1.37377 1.08631 1.17031 1.19417 0.95872 0.86165 0.83151 1.21330 0.92926 1.22495 1.22187 0.93491 1.25680 0.99758 0.96488 0.95908 1.69972 1.24030 1.32181 1.29438 0.85459 0.78924 0.78424 0.77999 1.20444 1.19253 1.19209 1.77570 1.17045 1.20871 0.98955 1.21942 0.77612 0.84924 0.86213 1.90846 1.57176 1.17157 1.68351 0.96538 0.89791 0.91872 0.90194 0.90295 0.94384 0.91074 0.90614 0.89944 0.68983 0.81088 0.76822 0.96085 0.91360 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 7.96 71.98 0.57 -2.25 16 2 C -0.06 -0.80 0.64 -52.18 -0.03 -0.83 16 3 C -0.15 -2.47 8.23 71.98 0.59 -1.88 16 4 C -0.13 -0.79 8.34 71.98 0.60 -0.19 16 5 C 0.12 2.09 2.95 44.37 0.13 2.22 16 6 H 0.17 1.81 8.14 -2.38 -0.02 1.79 16 7 N -0.69 -11.22 5.12 -459.61 -2.35 -13.57 16 8 C 0.71 20.18 8.52 179.44 1.53 21.71 16 9 O -0.56 -18.43 15.49 -3.83 -0.06 -18.49 16 10 N -0.50 -17.62 2.83 -599.32 -1.70 -19.32 16 11 C 0.25 10.74 7.68 133.24 1.02 11.76 16 12 C -0.28 -10.88 9.88 22.10 0.22 -10.66 16 13 C 0.07 2.61 11.44 83.52 0.96 3.57 16 14 N -0.34 -16.47 3.67 -351.85 -1.29 -17.77 16 15 C 0.27 14.49 6.26 85.63 0.54 15.02 16 16 C -0.55 -32.31 9.24 25.60 0.24 -32.07 16 17 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 18 C 0.02 1.27 5.46 84.65 0.46 1.74 16 19 N -0.92 -52.89 13.29 21.45 0.28 -52.60 16 20 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 N -0.31 -16.06 11.57 -54.33 -0.63 -16.69 16 25 C 0.50 16.25 6.01 87.94 0.53 16.77 16 26 O -0.47 -19.13 15.21 -2.90 -0.04 -19.18 16 27 H 0.02 0.43 7.15 -2.39 -0.02 0.41 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.13 7.62 -2.39 -0.02 1.11 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.95 6.09 -2.39 -0.01 0.93 16 33 H 0.07 0.27 7.20 -2.39 -0.02 0.26 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.46 3.88 8.25 -92.70 -0.76 3.12 16 37 H 0.17 6.09 6.52 -2.91 -0.02 6.07 16 38 H 0.22 6.22 8.06 -2.91 -0.02 6.20 16 39 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 3.45 8.07 -2.39 -0.02 3.43 16 41 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -79.07 342.72 3.88 -75.19 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.30 Total: 10.41 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 7.35 Total: 24.89 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -5.69 Total: -119.96 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.10 Total: -37.67 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.07 3.88 -75.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348596413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.726 kcal (2) G-P(sol) polarization free energy of solvation -79.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds