Wall clock time and date at job start Tue Mar 31 2020 09:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 C 1.53002 * 109.46966 * 120.00153 * 2 1 3 5 5 N 1.46499 * 109.46953 * 174.99765 * 4 2 1 6 6 C 1.47315 * 126.68721 * 89.99948 * 5 4 2 7 7 C 1.51588 * 103.73053 * 179.97438 * 6 5 4 8 8 O 1.21237 * 127.15623 * 180.02562 * 7 6 5 9 9 N 1.35118 * 105.50152 * 0.12874 * 7 6 5 10 10 C 1.40406 * 124.13333 * 179.97438 * 9 7 6 11 11 C 1.40365 * 125.96953 * 184.93575 * 10 9 7 12 12 C 1.35239 * 107.87278 * 179.97438 * 11 10 9 13 13 N 1.34962 * 107.85462 * 359.97438 * 12 11 10 14 14 C 1.46501 * 125.97917 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46910 * 125.00276 * 14 13 12 16 16 H 1.07996 * 120.00493 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99657 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99901 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00372 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47535 * 89.99873 * 19 17 15 21 21 H 1.48497 * 109.47192 * 209.99883 * 19 17 15 22 22 H 1.48504 * 109.46839 * 329.99878 * 19 17 15 23 23 N 1.31195 * 125.96912 * 4.63092 * 10 9 7 24 24 C 1.33792 * 111.69159 * 359.86148 * 9 7 6 25 25 O 1.21532 * 123.77052 * 180.09312 * 24 9 7 26 26 H 1.09001 * 109.47419 * 299.99795 * 1 2 3 27 27 H 1.08999 * 109.47454 * 59.99877 * 1 2 3 28 28 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46947 * 239.99600 * 2 1 3 30 30 H 1.08992 * 109.47029 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47029 * 300.00383 * 3 2 1 32 32 H 1.09001 * 109.46779 * 59.99813 * 3 2 1 33 33 H 1.09004 * 109.47227 * 54.99994 * 4 2 1 34 34 H 1.09001 * 109.47331 * 294.99830 * 4 2 1 35 35 H 1.09002 * 110.60011 * 298.56283 * 6 5 4 36 36 H 1.08999 * 110.59769 * 61.35421 * 6 5 4 37 37 H 1.08000 * 126.06439 * 359.96159 * 11 10 9 38 38 H 1.08009 * 126.07368 * 180.02562 * 12 11 10 39 39 H 1.08999 * 109.46992 * 244.99496 * 14 13 12 40 40 H 1.08991 * 109.47614 * 4.99972 * 14 13 12 41 41 H 0.97001 * 120.00037 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1905 6 6 4.4743 0.1467 1.7140 7 6 5.8167 -0.4725 1.3790 8 8 6.9140 -0.0183 1.6232 9 7 5.5319 -1.6340 0.7501 10 6 6.5018 -2.5265 0.2664 11 6 6.2531 -3.6917 -0.4757 12 6 7.4438 -4.2715 -0.7496 13 7 8.4121 -3.5058 -0.2041 14 6 9.8522 -3.7678 -0.2633 15 6 10.5580 -2.5673 -0.8395 16 1 9.9905 -1.6965 -1.1326 17 6 11.9282 -2.5808 -0.9923 18 7 12.5440 -1.5334 -1.4956 19 14 12.9099 -4.0867 -0.4846 20 1 13.0213 -5.0167 -1.6370 21 1 14.2679 -3.6697 -0.0522 22 1 12.2209 -4.7711 0.6389 23 7 7.7994 -2.4142 0.4244 24 6 4.2124 -1.8299 0.6471 25 8 3.7132 -2.8054 0.1215 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1584 2.1370 35 1 4.3609 1.1091 1.2150 36 1 4.3620 0.2595 2.7923 37 1 5.2828 -4.0600 -0.7747 38 1 7.5933 -5.1847 -1.3066 39 1 10.2277 -3.9624 0.7413 40 1 10.0379 -4.6363 -0.8952 41 1 13.5080 -1.5430 -1.6034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348601542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:36 Heat of formation + Delta-G solvation = 50.341732 kcal Electronic energy + Delta-G solvation = -25113.486410 eV Core-core repulsion = 21418.009558 eV Total energy + Delta-G solvation = -3695.476853 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48128 -40.37797 -38.59670 -37.20513 -35.86676 -34.46370 -33.24922 -31.43512 -29.66282 -28.93156 -27.62240 -27.17795 -26.22660 -23.55948 -22.54916 -21.69638 -20.56626 -19.90727 -19.36500 -17.54388 -17.30968 -16.93579 -16.53698 -16.13923 -15.78615 -15.26732 -14.92706 -14.73575 -14.43334 -14.17259 -14.08260 -13.73076 -13.35009 -13.20585 -13.05464 -12.73456 -12.61941 -12.45618 -12.24144 -12.15094 -11.73631 -11.28598 -11.21018 -11.10049 -10.84041 -10.77264 -10.66049 -10.33988 -10.08969 -9.79675 -9.54934 -9.18958 -8.75156 -8.42545 -7.77205 -6.21341 -4.24089 1.69030 1.81411 2.41064 2.75323 2.85073 3.16224 3.23373 3.24207 3.49738 3.64757 3.99388 4.24172 4.36620 4.45852 4.61241 4.75240 4.83902 4.95687 5.04248 5.15554 5.23167 5.28490 5.31653 5.36833 5.48582 5.50435 5.68391 5.77065 5.84233 5.91814 6.00571 6.22060 6.24625 6.40934 6.43569 6.62822 6.96346 7.14809 7.33917 7.51315 7.70443 8.09149 8.30542 8.41295 8.88959 9.32590 10.91438 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.003208 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.864190 B = 8724.875133 C = 9208.395413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.151 4.151 4 C 0.158 3.842 5 N -0.623 5.623 6 C 0.064 3.936 7 C 0.510 3.490 8 O -0.426 6.426 9 N -0.490 5.490 10 C 0.251 3.749 11 C -0.274 4.274 12 C 0.056 3.944 13 N -0.315 5.315 14 C 0.231 3.769 15 C -0.536 4.536 16 H 0.086 0.914 17 C 0.077 3.923 18 N -0.886 5.886 19 Si 0.873 3.127 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.253 5.253 24 C 0.710 3.290 25 O -0.528 6.528 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.636 1.857 5.826 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.208 4.208 4 C 0.037 3.963 5 N -0.363 5.363 6 C -0.062 4.062 7 C 0.295 3.705 8 O -0.290 6.290 9 N -0.233 5.233 10 C -0.001 4.001 11 C -0.305 4.305 12 C -0.093 4.093 13 N -0.097 5.097 14 C 0.112 3.888 15 C -0.574 4.574 16 H 0.104 0.896 17 C -0.127 4.127 18 N -0.523 5.523 19 Si 0.699 3.301 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.188 1.188 23 N -0.082 5.082 24 C 0.412 3.588 25 O -0.400 6.400 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.192 0.808 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.085 2.326 6.128 23.037 hybrid contribution 0.116 -1.056 -0.228 1.087 sum -21.969 1.270 5.900 22.783 Atomic orbital electron populations 1.21755 0.94086 1.02187 1.02141 1.21632 0.96278 0.96937 0.99185 1.21948 1.01238 0.95546 1.02093 1.21478 0.74235 1.02353 0.98238 1.47524 1.06243 1.21175 1.61335 1.22641 0.85131 0.95198 1.03214 1.21061 0.91315 0.80643 0.77436 1.90931 1.25517 1.63772 1.48735 1.42985 1.06088 1.20700 1.53489 1.18750 0.88053 0.92066 1.01243 1.21189 0.99439 0.98459 1.11417 1.22529 0.87887 0.98706 1.00176 1.48874 1.07889 1.14911 1.38031 1.20124 0.71220 0.98729 0.98689 1.21093 0.92618 1.00906 1.42760 0.89573 1.24827 0.97182 0.96291 0.94392 1.69878 1.09680 1.29061 1.43691 0.86908 0.80426 0.83199 0.79574 1.19688 1.20487 1.18850 1.77722 1.03198 1.07550 1.19766 1.15521 0.79999 0.83633 0.79637 1.90928 1.72221 1.29944 1.46949 0.92454 0.92207 0.92264 0.90275 0.92531 0.92376 0.92416 0.89053 0.89388 0.85858 0.85909 0.82515 0.80783 0.93780 0.93039 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.19 37.16 0.34 -0.40 16 2 C -0.12 -0.83 3.13 -90.62 -0.28 -1.11 16 3 C -0.15 -0.94 8.90 37.16 0.33 -0.61 16 4 C 0.16 1.10 5.55 -4.04 -0.02 1.08 16 5 N -0.62 -6.37 2.76 -180.01 -0.50 -6.87 16 6 C 0.06 0.59 7.19 -4.31 -0.03 0.56 16 7 C 0.51 8.14 8.30 -10.39 -0.09 8.06 16 8 O -0.43 -8.62 17.19 5.59 0.10 -8.52 16 9 N -0.49 -8.64 2.84 -65.71 -0.19 -8.83 16 10 C 0.25 5.31 7.68 -154.18 -1.18 4.12 16 11 C -0.27 -5.26 9.88 -39.85 -0.39 -5.66 16 12 C 0.06 1.06 11.44 -17.24 -0.20 0.86 16 13 N -0.31 -7.26 3.67 -62.56 -0.23 -7.49 16 14 C 0.23 5.54 5.33 -5.19 -0.03 5.52 16 15 C -0.54 -15.46 9.79 -34.44 -0.34 -15.80 16 16 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 18 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 23 N -0.25 -6.19 11.58 31.48 0.36 -5.83 16 24 C 0.71 10.68 8.27 -88.02 -0.73 9.95 16 25 O -0.53 -9.04 15.16 5.34 0.08 -8.96 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.41 5.46 -51.93 -0.28 0.12 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.68 8.03 -51.93 -0.42 0.27 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.12 0.87 6.02 -51.93 -0.31 0.56 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.16 2.80 6.52 -52.49 -0.34 2.46 16 38 H 0.18 2.50 8.06 -52.48 -0.42 2.08 16 39 H 0.04 1.06 7.20 -51.93 -0.37 0.68 16 40 H 0.05 1.10 7.50 -51.93 -0.39 0.71 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -36.69 345.76 -7.29 -43.98 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.51 Total: -0.76 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -2.72 Total: 8.67 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.22 Total: -55.29 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.18 Total: -17.48 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.69 -7.29 -43.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348601542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.317 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds