Wall clock time and date at job start Tue Mar 31 2020 09:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 C 1.53002 * 109.46966 * 120.00153 * 2 1 3 5 5 N 1.46499 * 109.46953 * 174.99765 * 4 2 1 6 6 C 1.47315 * 126.68721 * 89.99948 * 5 4 2 7 7 C 1.51588 * 103.73053 * 179.97438 * 6 5 4 8 8 O 1.21237 * 127.15623 * 180.02562 * 7 6 5 9 9 N 1.35118 * 105.50152 * 0.12874 * 7 6 5 10 10 C 1.40406 * 124.13333 * 179.97438 * 9 7 6 11 11 C 1.40365 * 125.96953 * 184.93575 * 10 9 7 12 12 C 1.35239 * 107.87278 * 179.97438 * 11 10 9 13 13 N 1.34962 * 107.85462 * 359.97438 * 12 11 10 14 14 C 1.46501 * 125.97917 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46910 * 125.00276 * 14 13 12 16 16 H 1.07996 * 120.00493 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99657 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99901 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00372 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47535 * 89.99873 * 19 17 15 21 21 H 1.48497 * 109.47192 * 209.99883 * 19 17 15 22 22 H 1.48504 * 109.46839 * 329.99878 * 19 17 15 23 23 N 1.31195 * 125.96912 * 4.63092 * 10 9 7 24 24 C 1.33792 * 111.69159 * 359.86148 * 9 7 6 25 25 O 1.21532 * 123.77052 * 180.09312 * 24 9 7 26 26 H 1.09001 * 109.47419 * 299.99795 * 1 2 3 27 27 H 1.08999 * 109.47454 * 59.99877 * 1 2 3 28 28 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46947 * 239.99600 * 2 1 3 30 30 H 1.08992 * 109.47029 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47029 * 300.00383 * 3 2 1 32 32 H 1.09001 * 109.46779 * 59.99813 * 3 2 1 33 33 H 1.09004 * 109.47227 * 54.99994 * 4 2 1 34 34 H 1.09001 * 109.47331 * 294.99830 * 4 2 1 35 35 H 1.09002 * 110.60011 * 298.56283 * 6 5 4 36 36 H 1.08999 * 110.59769 * 61.35421 * 6 5 4 37 37 H 1.08000 * 126.06439 * 359.96159 * 11 10 9 38 38 H 1.08009 * 126.07368 * 180.02562 * 12 11 10 39 39 H 1.08999 * 109.46992 * 244.99496 * 14 13 12 40 40 H 1.08991 * 109.47614 * 4.99972 * 14 13 12 41 41 H 0.97001 * 120.00037 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1905 6 6 4.4743 0.1467 1.7140 7 6 5.8167 -0.4725 1.3790 8 8 6.9140 -0.0183 1.6232 9 7 5.5319 -1.6340 0.7501 10 6 6.5018 -2.5265 0.2664 11 6 6.2531 -3.6917 -0.4757 12 6 7.4438 -4.2715 -0.7496 13 7 8.4121 -3.5058 -0.2041 14 6 9.8522 -3.7678 -0.2633 15 6 10.5580 -2.5673 -0.8395 16 1 9.9905 -1.6965 -1.1326 17 6 11.9282 -2.5808 -0.9923 18 7 12.5440 -1.5334 -1.4956 19 14 12.9099 -4.0867 -0.4846 20 1 13.0213 -5.0167 -1.6370 21 1 14.2679 -3.6697 -0.0522 22 1 12.2209 -4.7711 0.6389 23 7 7.7994 -2.4142 0.4244 24 6 4.2124 -1.8299 0.6471 25 8 3.7132 -2.8054 0.1215 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1584 2.1370 35 1 4.3609 1.1091 1.2150 36 1 4.3620 0.2595 2.7923 37 1 5.2828 -4.0600 -0.7747 38 1 7.5933 -5.1847 -1.3066 39 1 10.2277 -3.9624 0.7413 40 1 10.0379 -4.6363 -0.8952 41 1 13.5080 -1.5430 -1.6034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348601542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:36 Heat of formation + Delta-G solvation = 24.920763 kcal Electronic energy + Delta-G solvation = -25114.588746 eV Core-core repulsion = 21418.009558 eV Total energy + Delta-G solvation = -3696.579189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.68716 -41.92896 -39.86672 -38.02646 -37.11759 -35.82571 -34.91886 -33.20819 -31.23250 -29.99177 -29.02762 -27.91869 -27.13848 -25.19388 -23.75366 -23.23388 -21.61878 -21.11683 -20.57244 -19.21167 -18.71365 -18.45493 -17.77148 -17.48800 -16.82733 -16.60443 -16.32332 -15.77342 -15.66720 -15.50564 -15.19059 -14.93937 -14.91914 -14.46156 -14.14907 -14.06418 -13.84629 -13.70533 -13.06764 -13.00734 -12.72850 -12.56045 -12.46005 -12.31268 -12.07148 -11.90795 -11.82133 -11.77065 -11.66779 -11.54051 -11.14803 -10.89413 -10.13453 -9.96894 -9.39724 -8.40131 -6.51605 0.47081 0.61509 0.88601 1.34027 1.38275 1.44552 1.48069 1.71985 2.04037 2.24746 2.27156 2.90016 2.93038 3.51697 3.85386 3.89683 3.91708 4.06018 4.19604 4.23273 4.31696 4.33157 4.56115 4.63700 4.71137 4.72394 4.81580 4.84315 4.89563 4.99172 5.06970 5.14904 5.20352 5.32017 5.34619 5.46285 5.52541 5.55491 5.91389 5.95607 6.27989 6.31815 6.53337 6.77458 6.91907 7.10937 8.77664 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.003208 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.864190 B = 8724.875133 C = 9208.395413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C -0.151 4.151 4 C 0.152 3.848 5 N -0.603 5.603 6 C 0.084 3.916 7 C 0.498 3.502 8 O -0.483 6.483 9 N -0.504 5.504 10 C 0.247 3.753 11 C -0.279 4.279 12 C 0.071 3.929 13 N -0.340 5.340 14 C 0.239 3.761 15 C -0.551 4.551 16 H 0.020 0.980 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.960 3.040 20 H -0.248 1.248 21 H -0.281 1.281 22 H -0.239 1.239 23 N -0.319 5.319 24 C 0.702 3.298 25 O -0.556 6.556 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.225 0.775 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.695 0.401 7.163 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.208 4.208 4 C 0.033 3.967 5 N -0.341 5.341 6 C -0.040 4.040 7 C 0.287 3.713 8 O -0.351 6.351 9 N -0.247 5.247 10 C -0.006 4.006 11 C -0.310 4.310 12 C -0.076 4.076 13 N -0.122 5.122 14 C 0.119 3.881 15 C -0.589 4.589 16 H 0.038 0.962 17 C -0.186 4.186 18 N -0.582 5.582 19 Si 0.780 3.220 20 H -0.172 1.172 21 H -0.206 1.206 22 H -0.162 1.162 23 N -0.148 5.148 24 C 0.404 3.596 25 O -0.430 6.430 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.150 0.850 35 H 0.173 0.827 36 H 0.188 0.812 37 H 0.189 0.811 38 H 0.241 0.759 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.244 0.895 7.474 25.386 hybrid contribution 0.581 -0.474 -0.697 1.024 sum -23.663 0.420 6.777 24.618 Atomic orbital electron populations 1.21720 0.92548 1.02363 1.03083 1.21582 0.97486 0.97017 0.97734 1.21960 1.00460 0.95134 1.03227 1.21886 0.71686 1.03049 1.00053 1.47736 1.07364 1.19565 1.59456 1.22872 0.80183 0.94883 1.06109 1.22281 0.93075 0.80040 0.75939 1.90894 1.28331 1.64938 1.50935 1.43461 1.06660 1.20889 1.53667 1.19249 0.87975 0.92953 1.00399 1.21448 1.00266 0.97985 1.11297 1.23342 0.86617 0.99206 0.98455 1.48776 1.08041 1.15760 1.39671 1.19979 0.71722 0.97484 0.98886 1.21214 0.93205 1.00964 1.43552 0.96196 1.26000 0.98272 1.00570 0.93771 1.70068 1.10371 1.32336 1.45417 0.85554 0.77777 0.78106 0.80536 1.17169 1.20617 1.16190 1.77622 1.05113 1.09569 1.22463 1.15746 0.79310 0.84512 0.80007 1.90890 1.72344 1.31371 1.48409 0.90380 0.92405 0.92514 0.93559 0.93658 0.92759 0.89893 0.89423 0.84992 0.82699 0.81232 0.81148 0.75869 0.93624 0.89036 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.19 71.98 0.66 -0.43 16 2 C -0.12 -1.37 3.13 -10.79 -0.03 -1.40 16 3 C -0.15 -1.46 8.90 71.98 0.64 -0.82 16 4 C 0.15 1.63 5.55 86.38 0.48 2.11 16 5 N -0.60 -11.00 2.76 -841.85 -2.32 -13.33 16 6 C 0.08 1.33 7.19 85.76 0.62 1.95 16 7 C 0.50 16.21 8.30 87.89 0.73 16.94 16 8 O -0.48 -20.73 17.19 -2.90 -0.05 -20.78 16 9 N -0.50 -18.22 2.84 -598.84 -1.70 -19.92 16 10 C 0.25 10.86 7.68 133.23 1.02 11.88 16 11 C -0.28 -10.76 9.88 22.10 0.22 -10.54 16 12 C 0.07 2.63 11.44 83.52 0.96 3.59 16 13 N -0.34 -15.94 3.67 -351.85 -1.29 -17.23 16 14 C 0.24 11.41 5.33 85.63 0.46 11.86 16 15 C -0.55 -33.24 9.79 25.60 0.25 -32.99 16 16 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 17 C 0.01 0.73 5.47 84.65 0.46 1.20 16 18 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 19 Si 0.96 41.63 27.47 68.60 1.88 43.51 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 23 N -0.32 -16.41 11.58 -54.33 -0.63 -17.04 16 24 C 0.70 20.88 8.27 179.44 1.48 22.36 16 25 O -0.56 -19.00 15.16 -3.82 -0.06 -19.05 16 26 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.54 5.46 -2.39 -0.01 0.52 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 1.09 8.03 -2.38 -0.02 1.07 16 34 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.16 1.67 6.02 -2.39 -0.01 1.65 16 36 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.17 6.03 6.52 -2.91 -0.02 6.01 16 38 H 0.22 5.64 8.06 -2.91 -0.02 5.61 16 39 H 0.05 2.15 7.20 -2.39 -0.02 2.13 16 40 H 0.09 3.63 7.50 -2.39 -0.02 3.61 16 41 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -90.37 345.76 5.07 -85.30 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.99 Total: 12.57 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 7.94 Total: 25.71 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -5.65 Total: -127.27 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.11 Total: -39.83 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.51 kcal Total: -90.37 5.07 -85.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348601542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.223 kcal (2) G-P(sol) polarization free energy of solvation -90.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds