Wall clock time and date at job start Tue Mar 31 2020 09:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 N 1.46505 * 109.47060 * 179.97438 * 3 2 1 5 5 C 1.47309 * 126.69129 * 270.16353 * 4 3 2 6 6 C 1.51585 * 103.59522 * 180.26666 * 5 4 3 7 7 O 1.21240 * 127.16081 * 179.80377 * 6 5 4 8 8 N 1.34766 * 105.68054 * 359.76270 * 6 5 4 9 9 C 1.40406 * 124.17806 * 179.97438 * 8 6 5 10 10 C 1.40375 * 125.96865 * 185.04052 * 9 8 6 11 11 C 1.35244 * 107.86924 * 179.97438 * 10 9 8 12 12 C 1.50699 * 126.07384 * 179.97438 * 11 10 9 13 13 N 1.34975 * 107.85503 * 0.02562 * 11 10 9 14 14 C 1.46493 * 125.97669 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47585 * 89.99744 * 14 13 11 16 16 H 1.08004 * 119.99741 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00286 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99538 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 119.99974 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 89.99935 * 19 17 15 21 21 H 1.48503 * 109.47065 * 209.99786 * 19 17 15 22 22 H 1.48505 * 109.47169 * 329.99583 * 19 17 15 23 23 N 1.31192 * 125.96583 * 4.73103 * 9 8 6 24 24 C 1.33791 * 111.64749 * 0.02562 * 8 6 5 25 25 O 1.21543 * 123.77173 * 179.97438 * 24 8 6 26 26 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46944 * 300.00109 * 1 2 3 28 28 H 1.08999 * 109.46770 * 59.99913 * 1 2 3 29 29 H 1.09000 * 109.47671 * 239.99727 * 2 1 3 30 30 H 1.09008 * 109.47317 * 119.99921 * 2 1 3 31 31 H 1.08996 * 109.46920 * 60.00308 * 3 2 1 32 32 H 1.08999 * 109.47429 * 299.99683 * 3 2 1 33 33 H 1.08998 * 110.80263 * 61.64125 * 5 4 3 34 34 H 1.09007 * 110.52940 * 298.75553 * 5 4 3 35 35 H 1.07998 * 126.06759 * 0.02562 * 10 9 8 36 36 H 1.08998 * 109.46867 * 90.02322 * 12 11 10 37 37 H 1.08994 * 109.47089 * 210.03043 * 12 11 10 38 38 H 1.09004 * 109.46908 * 330.02597 * 12 11 10 39 39 H 1.09008 * 109.46532 * 209.99384 * 14 13 11 40 40 H 1.08995 * 109.47527 * 329.99240 * 14 13 11 41 41 H 0.97007 * 119.99439 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3847 1.4394 1.1822 6 6 5.7793 1.4478 0.5882 7 8 6.8317 1.4518 1.1901 8 7 5.6059 1.4491 -0.7483 9 6 6.6564 1.4569 -1.6799 10 6 6.5217 1.5583 -3.0735 11 6 7.7614 1.5301 -3.6133 12 6 8.0921 1.6117 -5.0813 13 7 8.6499 1.4147 -2.6038 14 6 10.1067 1.3483 -2.7429 15 6 10.6801 2.7411 -2.6937 16 1 10.0247 3.5908 -2.5716 17 6 12.0412 2.9306 -2.8047 18 7 12.5415 4.1462 -2.7623 19 14 13.1746 1.4610 -3.0168 20 1 13.3473 1.1738 -4.4635 21 1 14.4962 1.7637 -2.4110 22 1 12.5813 0.2773 -2.3443 23 7 7.9355 1.3762 -1.3995 24 6 4.3092 1.4433 -1.0778 25 8 3.9032 1.4436 -2.2234 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 4.2277 0.5411 1.7793 34 1 4.2190 2.3327 1.7845 35 1 5.5930 1.6445 -3.6179 36 1 8.2255 2.6554 -5.3662 37 1 9.0119 1.0609 -5.2777 38 1 7.2778 1.1779 -5.6618 39 1 10.5227 0.7552 -1.9284 40 1 10.3600 0.8846 -3.6962 41 1 13.4991 4.2796 -2.8408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348660937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:58 Heat of formation + Delta-G solvation = 44.754716 kcal Electronic energy + Delta-G solvation = -25076.328172 eV Core-core repulsion = 21380.609049 eV Total energy + Delta-G solvation = -3695.719124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51461 -40.47253 -38.60653 -36.60656 -35.78569 -34.08221 -33.13417 -31.69429 -31.21693 -28.78439 -27.31213 -26.69223 -26.18820 -23.50312 -22.76357 -21.89883 -21.33188 -19.64678 -18.84473 -17.36878 -17.18683 -17.08930 -16.64936 -15.81034 -15.71508 -15.23570 -14.89952 -14.73396 -14.36890 -14.19834 -14.10797 -13.81003 -13.33372 -13.27416 -12.63468 -12.56687 -12.51900 -12.37414 -12.34505 -12.02464 -11.75441 -11.65659 -11.33225 -11.12231 -10.83418 -10.78506 -10.62315 -10.36942 -10.07944 -9.77032 -9.65086 -9.24976 -8.78435 -8.23201 -7.73314 -6.26357 -4.29804 1.64660 1.78235 2.38499 2.72010 2.83593 3.14544 3.22775 3.24220 3.46985 3.62903 3.95699 4.21722 4.37760 4.54877 4.75411 4.82757 4.85447 4.95225 5.00954 5.14473 5.22280 5.27882 5.37516 5.51475 5.63278 5.66927 5.79159 5.85162 5.93775 5.98593 6.21652 6.25180 6.29916 6.46092 6.59449 6.63327 6.98656 7.22871 7.27905 7.47945 7.73432 8.06426 8.28761 8.38426 8.78287 9.28221 10.86134 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.003327 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.538519 B = 8414.245542 C = 9003.162888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.153 3.847 4 N -0.626 5.626 5 C 0.069 3.931 6 C 0.511 3.489 7 O -0.432 6.432 8 N -0.489 5.489 9 C 0.258 3.742 10 C -0.277 4.277 11 C 0.099 3.901 12 C -0.085 4.085 13 N -0.312 5.312 14 C 0.230 3.770 15 C -0.541 4.541 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.885 5.885 19 Si 0.872 3.128 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.263 1.263 23 N -0.273 5.273 24 C 0.709 3.291 25 O -0.526 6.526 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.105 -7.817 4.633 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.032 3.968 4 N -0.366 5.366 5 C -0.058 4.058 6 C 0.296 3.704 7 O -0.297 6.297 8 N -0.231 5.231 9 C 0.007 3.993 10 C -0.308 4.308 11 C -0.032 4.032 12 C -0.144 4.144 13 N -0.095 5.095 14 C 0.111 3.889 15 C -0.580 4.580 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.522 5.522 19 Si 0.698 3.302 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.187 1.187 23 N -0.102 5.102 24 C 0.411 3.589 25 O -0.397 6.397 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.175 0.825 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.625 -7.805 5.251 22.669 hybrid contribution 0.222 -0.478 -0.494 0.723 sum -20.403 -8.283 4.757 22.528 Atomic orbital electron populations 1.21682 0.94649 1.02248 1.02105 1.21997 0.96462 0.96969 1.03151 1.21444 0.73840 0.97469 1.04042 1.47585 1.06207 1.77811 1.05025 1.22503 0.86233 1.06598 0.90418 1.20988 0.91605 0.75963 0.81811 1.90901 1.30593 1.42910 1.65260 1.42911 1.05789 1.66720 1.07668 1.18598 0.86792 1.05840 0.88085 1.20898 0.98123 1.20781 0.91022 1.21030 0.89025 1.00266 0.92836 1.20381 1.02350 1.03759 0.87872 1.48777 1.07598 1.51855 1.01234 1.20077 0.70442 1.00007 0.98330 1.21140 0.93325 0.90901 1.52603 0.90069 1.24795 0.97562 0.95995 0.94103 1.69876 1.13251 1.20538 1.48546 0.86906 0.81027 0.83175 0.79086 1.19576 1.20427 1.18746 1.77590 1.01060 1.25922 1.05595 1.15547 0.79858 0.78036 0.85475 1.90938 1.76524 1.53864 1.18408 0.92270 0.92481 0.92259 0.91102 0.91542 0.89393 0.89046 0.86011 0.85863 0.82537 0.89810 0.90867 0.90434 0.92959 0.93347 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.35 16 2 C -0.15 -0.93 6.26 -26.73 -0.17 -1.10 16 3 C 0.15 1.04 6.15 -4.04 -0.02 1.01 16 4 N -0.63 -6.38 3.02 -180.01 -0.54 -6.92 16 5 C 0.07 0.60 7.66 -4.32 -0.03 0.57 16 6 C 0.51 7.95 8.28 -10.55 -0.09 7.86 16 7 O -0.43 -8.41 17.17 5.59 0.10 -8.32 16 8 N -0.49 -8.62 2.83 -65.79 -0.19 -8.80 16 9 C 0.26 5.53 7.68 -154.17 -1.18 4.35 16 10 C -0.28 -5.60 9.79 -39.84 -0.39 -5.99 16 11 C 0.10 2.03 6.93 -82.28 -0.57 1.46 16 12 C -0.09 -1.37 10.11 36.00 0.36 -1.01 16 13 N -0.31 -7.39 3.59 -58.33 -0.21 -7.60 16 14 C 0.23 5.62 5.06 -5.20 -0.03 5.59 16 15 C -0.54 -15.36 9.94 -34.44 -0.34 -15.70 16 16 H 0.08 2.60 8.06 -52.48 -0.42 2.18 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 19 Si 0.87 20.31 27.47 -169.99 -4.67 15.64 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 23 N -0.27 -6.65 11.74 31.48 0.37 -6.28 16 24 C 0.71 10.74 8.27 -88.02 -0.73 10.02 16 25 O -0.53 -9.14 15.16 5.33 0.08 -9.06 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 33 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.12 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.16 2.96 6.52 -52.49 -0.34 2.61 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.13 7.07 -51.93 -0.37 0.77 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.30 7.20 -51.92 -0.37 0.93 16 40 H 0.05 1.06 6.47 -51.93 -0.34 0.73 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -36.30 350.27 -7.58 -43.88 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.65 Total: -0.94 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -2.92 Total: 8.87 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.20 Total: -55.36 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.18 Total: -17.37 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.30 -7.58 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348660937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.634 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds