Wall clock time and date at job start Tue Mar 31 2020 09:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.53552 * 305.70414 * 4 3 2 6 6 N 1.47311 * 110.59903 * 68.53127 * 4 3 2 7 7 C 1.34864 * 106.44034 * 118.48225 * 6 4 3 8 8 O 1.21533 * 123.73181 * 180.02562 * 7 6 4 9 9 N 1.33789 * 112.49811 * 0.13528 * 7 6 4 10 10 C 1.40401 * 124.17876 * 179.97438 * 9 7 6 11 11 C 1.40379 * 125.97375 * 184.67488 * 10 9 7 12 12 C 1.35239 * 107.87353 * 179.82710 * 11 10 9 13 13 C 1.50697 * 126.07230 * 180.19857 * 12 11 10 14 14 N 1.34963 * 107.85326 * 0.42902 * 12 11 10 15 15 C 1.46507 * 125.97835 * 179.70905 * 14 12 11 16 16 C 1.50700 * 109.46820 * 269.99990 * 15 14 12 17 17 H 1.07999 * 120.00468 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00018 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47047 * 89.99758 * 20 18 16 22 22 H 1.48499 * 109.47063 * 209.99604 * 20 18 16 23 23 H 1.48494 * 109.47099 * 330.00166 * 20 18 16 24 24 N 1.31202 * 125.96940 * 4.98241 * 10 9 7 25 25 C 1.34770 * 111.64761 * 359.91118 * 9 7 6 26 26 O 1.21234 * 127.15779 * 180.02562 * 25 9 7 27 27 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 28 28 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 29 29 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 0.97003 * 126.68874 * 298.47860 * 6 4 3 35 35 H 1.07998 * 126.05508 * 359.96267 * 11 10 9 36 36 H 1.09003 * 109.47048 * 270.27583 * 13 12 11 37 37 H 1.09004 * 109.47510 * 30.27318 * 13 12 11 38 38 H 1.08997 * 109.47167 * 150.27808 * 13 12 11 39 39 H 1.08995 * 109.47278 * 29.99833 * 15 14 12 40 40 H 1.08992 * 109.47220 * 150.00656 * 15 14 12 41 41 H 0.97000 * 120.00506 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9527 0.8467 0.8280 6 7 4.0877 0.9381 -1.2842 7 6 4.7991 1.9449 -1.8310 8 8 5.3678 1.8654 -2.9021 9 7 4.8110 3.0398 -1.0622 10 6 5.4774 4.2300 -1.3949 11 6 5.5923 5.3665 -0.5789 12 6 6.3079 6.2929 -1.2560 13 6 6.6779 7.6663 -0.7581 14 7 6.6276 5.7709 -2.4589 15 6 7.3950 6.4412 -3.5116 16 6 6.4542 7.1920 -4.4184 17 1 5.3910 7.1715 -4.2298 18 6 6.9507 7.9041 -5.4896 19 7 8.2453 7.9287 -5.7196 20 14 5.7844 8.8341 -6.6141 21 1 5.5980 10.2151 -6.1009 22 1 6.3554 8.8880 -7.9839 23 1 4.4729 8.1387 -6.6514 24 7 6.0968 4.4764 -2.5249 25 6 4.1033 2.8597 0.0705 26 8 3.9290 3.6639 0.9608 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9443 0.0555 -1.6603 35 1 5.1836 5.4798 0.4143 36 1 5.8968 8.3751 -1.0331 37 1 6.7823 7.6436 0.3267 38 1 7.6221 7.9736 -1.2077 39 1 8.0986 7.1401 -3.0593 40 1 7.9426 5.6982 -4.0912 41 1 8.5947 8.4300 -6.4729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348690810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:14 Heat of formation + Delta-G solvation = 28.037822 kcal Electronic energy + Delta-G solvation = -25073.463691 eV Core-core repulsion = 21377.019669 eV Total energy + Delta-G solvation = -3696.444023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.58198 -40.41502 -38.58314 -36.77649 -35.56072 -34.15973 -33.28234 -31.57948 -30.96551 -29.46167 -27.08075 -26.54836 -25.25553 -23.83164 -22.62898 -21.95201 -21.51995 -19.59808 -18.83061 -17.91483 -17.10842 -16.72567 -16.30316 -16.00704 -15.69891 -15.30601 -15.22674 -14.54521 -14.31678 -14.27145 -14.16227 -13.88097 -13.27636 -13.09748 -12.56832 -12.45677 -12.35684 -12.25821 -11.99324 -11.78588 -11.57706 -11.47437 -11.15481 -11.10703 -10.85700 -10.76299 -10.63028 -10.27910 -10.25928 -9.73601 -9.65093 -9.58902 -8.64033 -8.18019 -7.73377 -6.25918 -4.33132 1.53543 1.97070 2.50766 2.87771 2.93812 3.21997 3.28643 3.34161 3.57159 3.67426 3.84526 4.23236 4.30581 4.42266 4.64972 4.75416 5.02889 5.07775 5.09760 5.24120 5.27693 5.35310 5.44109 5.52049 5.69275 5.72404 5.75785 5.87695 5.98967 6.03414 6.20958 6.31237 6.60143 6.69100 6.81777 7.00854 7.06109 7.29523 7.41545 7.65513 7.86781 7.93034 8.20427 8.49393 8.72679 9.33032 10.82047 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.003452 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.787150 B = 8108.874110 C = 8579.683449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.101 3.899 5 H 0.130 0.870 6 N -0.727 5.727 7 C 0.694 3.306 8 O -0.501 6.501 9 N -0.484 5.484 10 C 0.250 3.750 11 C -0.287 4.287 12 C 0.099 3.901 13 C -0.085 4.085 14 N -0.312 5.312 15 C 0.256 3.744 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.066 3.934 19 N -0.891 5.891 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.264 5.264 25 C 0.529 3.471 26 O -0.454 6.454 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.440 0.560 35 H 0.151 0.849 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 -12.995 14.833 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.008 4.008 5 H 0.147 0.853 6 N -0.395 5.395 7 C 0.394 3.606 8 O -0.369 6.369 9 N -0.227 5.227 10 C -0.001 4.001 11 C -0.319 4.319 12 C -0.033 4.033 13 C -0.143 4.143 14 N -0.095 5.095 15 C 0.139 3.861 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.529 5.529 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.093 5.093 25 C 0.315 3.685 26 O -0.321 6.321 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.285 0.715 35 H 0.169 0.831 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.226 -12.846 13.314 21.139 hybrid contribution -0.849 0.336 -0.166 0.928 sum -11.075 -12.510 13.148 21.261 Atomic orbital electron populations 1.21759 0.95166 1.01913 1.02247 1.21501 0.96591 0.95370 1.02437 1.21896 0.90470 0.98995 1.04711 1.22081 0.97165 0.92298 0.89240 0.85309 1.45566 1.55831 1.16022 1.22047 1.15944 0.80542 0.80342 0.83777 1.91117 1.46088 1.80625 1.19075 1.42924 1.46943 1.11687 1.21123 1.18651 1.00514 0.85849 0.95064 1.20747 1.14450 0.93030 1.03625 1.21005 0.98233 0.96830 0.87216 1.20366 1.02913 0.90335 1.00681 1.49329 1.39088 1.08446 1.12624 1.19790 0.90615 0.92178 0.83501 1.21286 0.93893 1.30783 1.11553 0.91712 1.24919 0.95485 0.96206 0.97099 1.69915 1.11709 1.41372 1.29886 0.86337 0.80808 0.79826 0.79631 1.20276 1.20825 1.19670 1.77721 1.16419 0.97662 1.17460 1.20822 0.77319 0.89597 0.80739 1.90769 1.56178 1.49500 1.35653 0.92422 0.92498 0.92476 0.91698 0.91313 0.90385 0.89007 0.71548 0.83114 0.90121 0.90623 0.90545 0.92487 0.92649 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.60 5.86 -26.73 -0.16 -0.76 16 3 C -0.12 -0.85 4.97 -26.73 -0.13 -0.98 16 4 C 0.10 0.88 3.65 -68.21 -0.25 0.63 16 5 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 6 N -0.73 -7.42 6.04 -59.10 -0.36 -7.77 16 7 C 0.69 11.58 8.60 -87.72 -0.75 10.83 16 8 O -0.50 -10.73 16.83 5.34 0.09 -10.64 16 9 N -0.48 -8.51 2.83 -65.70 -0.19 -8.70 16 10 C 0.25 5.39 7.67 -154.17 -1.18 4.21 16 11 C -0.29 -5.72 9.89 -39.84 -0.39 -6.11 16 12 C 0.10 2.03 6.92 -82.29 -0.57 1.46 16 13 C -0.08 -1.37 10.11 36.00 0.36 -1.01 16 14 N -0.31 -7.56 3.59 -58.33 -0.21 -7.77 16 15 C 0.26 6.68 5.99 -5.19 -0.03 6.65 16 16 C -0.54 -15.00 9.39 -34.44 -0.32 -15.32 16 17 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 20 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 N -0.26 -6.60 11.51 31.48 0.36 -6.23 16 25 C 0.53 7.34 7.59 -10.56 -0.08 7.26 16 26 O -0.45 -7.00 15.90 5.60 0.09 -6.91 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 7.55 -51.93 -0.39 -0.09 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.44 3.17 8.51 -40.82 -0.35 2.82 16 35 H 0.15 2.71 6.69 -52.49 -0.35 2.36 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.25 7.07 -51.93 -0.37 0.89 16 39 H 0.06 1.44 7.04 -51.93 -0.37 1.07 16 40 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -34.86 351.24 -8.04 -42.90 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.60 Total: -0.13 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -3.24 Total: 8.17 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.35 Total: -55.03 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.18 Total: -17.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.86 -8.04 -42.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348690810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.935 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds