Wall clock time and date at job start Tue Mar 31 2020 09:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47564 * 2 1 4 4 H 1.09001 * 109.46668 * 305.63645 * 3 2 1 5 5 C 1.50694 * 109.47015 * 185.63924 * 3 2 1 6 6 H 1.08009 * 119.99488 * 245.18928 * 5 3 2 7 7 C 1.37873 * 120.00410 * 65.19848 * 5 3 2 8 8 N 1.31516 * 119.99905 * 6.47368 * 7 5 3 9 9 Si 1.86803 * 119.99882 * 186.20550 * 7 5 3 10 10 H 1.48493 * 109.47457 * 84.99110 * 9 7 5 11 11 H 1.48503 * 109.46690 * 204.99196 * 9 7 5 12 12 H 1.48501 * 109.47231 * 324.98437 * 9 7 5 13 13 N 1.46497 * 109.47148 * 65.63301 * 3 2 1 14 14 C 1.34773 * 119.99964 * 275.00340 * 13 3 2 15 15 O 1.21273 * 120.00278 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99764 * 179.97438 * 14 13 3 17 17 H 1.08993 * 109.50887 * 299.91544 * 16 14 13 18 18 C 1.53099 * 109.50681 * 60.00312 * 16 14 13 19 19 O 1.43009 * 109.25954 * 176.78248 * 18 16 14 20 20 C 1.43012 * 113.74116 * 301.32423 * 19 18 16 21 21 C 1.53104 * 109.25604 * 58.67425 * 20 19 18 22 22 N 1.47015 * 109.50556 * 179.77995 * 16 14 13 23 23 C 1.46903 * 110.99841 * 57.68060 * 22 16 14 24 24 C 1.53003 * 109.47277 * 173.14911 * 23 22 16 25 25 F 1.39898 * 109.46745 * 292.88212 * 24 23 22 26 26 F 1.39904 * 109.46938 * 52.87957 * 24 23 22 27 27 H 1.08997 * 109.47658 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47485 * 300.00326 * 1 2 3 29 29 H 1.09003 * 109.46855 * 59.99984 * 1 2 3 30 30 H 1.09003 * 109.47485 * 239.99673 * 2 1 3 31 31 H 1.09003 * 109.46855 * 120.00016 * 2 1 3 32 32 H 0.97000 * 119.99446 * 179.73176 * 8 7 5 33 33 H 0.96997 * 119.99623 * 95.00699 * 13 3 2 34 34 H 1.09003 * 109.50332 * 296.71331 * 18 16 14 35 35 H 1.09000 * 109.50577 * 56.84193 * 18 16 14 36 36 H 1.08997 * 109.51140 * 178.60184 * 20 19 18 37 37 H 1.08990 * 109.51162 * 298.74082 * 20 19 18 38 38 H 1.08995 * 109.50764 * 63.08481 * 21 20 19 39 39 H 1.08999 * 109.50676 * 183.17613 * 21 20 19 40 40 H 1.09001 * 109.46656 * 293.14276 * 23 22 16 41 41 H 1.08999 * 109.47299 * 53.14357 * 23 22 16 42 42 H 1.08993 * 109.47409 * 172.87851 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5405 1.4446 -0.1396 6 1 4.1575 1.8099 0.6682 7 6 4.1258 0.9806 -1.2985 8 7 3.3763 0.6557 -2.3292 9 14 5.9838 0.8204 -1.4072 10 1 6.4019 -0.4871 -0.8409 11 1 6.4052 0.9017 -2.8288 12 1 6.6212 1.9194 -0.6384 13 7 1.6656 2.0929 1.2582 14 6 0.4497 2.6593 1.3881 15 8 -0.3348 2.6303 0.4636 16 6 0.0643 3.3279 2.6826 17 1 0.1021 2.6004 3.4933 18 6 1.0380 4.4721 2.9766 19 8 0.6239 5.1500 4.1658 20 6 -0.6985 5.6892 4.0904 21 6 -1.6899 4.5574 3.8076 22 7 -1.2984 3.8679 2.5695 23 6 -2.2581 2.8085 2.2309 24 6 -3.6799 3.3705 2.2895 25 9 -3.9999 3.6924 3.6128 26 9 -3.7596 4.5209 1.4974 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.7884 0.3329 -3.1458 33 1 2.2929 2.1158 1.9976 34 1 2.0410 4.0692 3.1179 35 1 1.0405 5.1718 2.1408 36 1 -0.9516 6.1666 5.0370 37 1 -0.7466 6.4243 3.2870 38 1 -1.6807 3.8499 4.6367 39 1 -2.6918 4.9712 3.6933 40 1 -2.0538 2.4411 1.2252 41 1 -2.1615 1.9894 2.9435 42 1 -4.3814 2.6239 1.9174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356050738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:19 Heat of formation + Delta-G solvation = -167.759731 kcal Electronic energy + Delta-G solvation = -27277.307315 eV Core-core repulsion = 23121.683687 eV Total energy + Delta-G solvation = -4155.623628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.11514 -46.96423 -40.27273 -38.39986 -35.97401 -34.86551 -32.67090 -31.75306 -30.67598 -30.19139 -27.16356 -26.13317 -24.72520 -23.07030 -22.43565 -21.33811 -20.05491 -19.44859 -18.08426 -17.43748 -17.08981 -16.77160 -16.10613 -15.90864 -15.74886 -15.33111 -15.08015 -14.65995 -14.49055 -14.24397 -14.03804 -13.78076 -13.57293 -13.32755 -12.81290 -12.71797 -12.58926 -12.13395 -11.96512 -11.86283 -11.53642 -11.48765 -11.38120 -11.05877 -11.02965 -10.82788 -10.45226 -10.40612 -10.25499 -9.78348 -9.74126 -9.15408 -8.96447 -8.55912 -8.37583 -7.93542 -6.18636 -4.25632 3.17061 3.22549 3.29649 3.30598 3.39747 3.71024 3.77684 4.07798 4.18660 4.33809 4.56472 4.77180 4.86807 4.91611 5.04899 5.14880 5.16216 5.20033 5.40701 5.44599 5.58502 5.66124 5.76819 5.86419 5.94299 6.25356 6.28823 6.49706 6.66911 6.83644 6.89217 7.02386 7.08781 7.23296 7.32348 7.53576 7.64735 7.78101 8.02418 8.56053 8.72903 9.01621 9.41027 10.89103 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.004136 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.078827 B = 6768.479650 C = 7676.585929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.510 3.490 15 O -0.529 6.529 16 C 0.029 3.971 17 H 0.071 0.929 18 C 0.077 3.923 19 O -0.383 6.383 20 C 0.062 3.938 21 C -0.003 4.003 22 N -0.506 5.506 23 C -0.011 4.011 24 C 0.264 3.736 25 F -0.210 7.210 26 F -0.193 7.193 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.147 0.853 41 H 0.056 0.944 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 4.510 12.008 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.169 3.831 4 H 0.075 0.925 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.517 5.517 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.293 3.707 15 O -0.407 6.407 16 C -0.083 4.083 17 H 0.088 0.912 18 C -0.001 4.001 19 O -0.301 6.301 20 C -0.015 4.015 21 C -0.130 4.130 22 N -0.232 5.232 23 C -0.139 4.139 24 C 0.210 3.790 25 F -0.192 7.192 26 F -0.174 7.174 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.125 0.875 40 H 0.164 0.836 41 H 0.074 0.926 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.865 4.804 10.908 16.128 hybrid contribution 1.082 -0.765 0.774 1.535 sum -9.783 4.039 11.682 15.763 Atomic orbital electron populations 1.21847 0.98250 0.98160 1.01233 1.21863 0.92818 0.99923 1.01402 1.18819 0.94606 0.88940 0.80785 0.92533 1.21169 0.90554 1.43989 1.01870 0.92075 1.24876 0.98475 0.94974 0.95123 1.69959 1.35357 1.43200 1.03196 0.86514 0.84976 0.78617 0.77314 1.20459 1.21137 1.19863 1.46523 1.14186 1.55754 1.18739 1.19869 0.83269 0.79324 0.88233 1.90551 1.50103 1.59462 1.40556 1.22410 0.90840 0.97735 0.97348 0.91169 1.22605 0.96550 0.92660 0.88281 1.87983 1.31520 1.73263 1.37316 1.22717 0.81682 0.94851 1.02252 1.23423 1.01551 0.97412 0.90650 1.62007 1.00389 1.27547 1.33221 1.23786 0.89167 0.93346 1.07592 1.22038 0.98542 0.85080 0.73310 1.92883 1.94268 1.93727 1.38304 1.93011 1.97398 1.53317 1.73661 0.95757 0.94381 0.92870 0.89816 0.94808 0.92513 0.77970 0.87566 0.91321 0.88419 0.92041 0.93815 0.87528 0.83557 0.92599 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.53 37.15 0.32 -2.48 16 2 C -0.12 -2.74 5.49 -26.73 -0.15 -2.89 16 3 C 0.27 6.39 2.10 -69.08 -0.15 6.24 16 4 H 0.06 1.58 7.55 -51.93 -0.39 1.19 16 5 C -0.54 -13.59 8.67 -34.44 -0.30 -13.89 16 6 H 0.06 1.48 7.73 -52.48 -0.41 1.07 16 7 C 0.07 1.81 5.20 -17.82 -0.09 1.72 16 8 N -0.88 -24.17 12.00 55.43 0.67 -23.50 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -13.42 4.93 -54.94 -0.27 -13.69 16 14 C 0.51 9.24 5.49 -10.99 -0.06 9.18 16 15 O -0.53 -11.08 10.80 5.56 0.06 -11.02 16 16 C 0.03 0.42 2.38 -68.75 -0.16 0.26 16 17 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 18 C 0.08 1.05 6.16 37.21 0.23 1.28 16 19 O -0.38 -5.18 10.83 -35.23 -0.38 -5.57 16 20 C 0.06 0.72 7.01 37.21 0.26 0.98 16 21 C 0.00 -0.03 4.47 -3.70 -0.02 -0.05 16 22 N -0.51 -7.28 4.29 -227.71 -0.98 -8.26 16 23 C -0.01 -0.15 4.99 -3.82 -0.02 -0.16 16 24 C 0.26 2.97 5.14 37.16 0.19 3.16 16 25 F -0.21 -2.39 14.06 2.25 0.03 -2.35 16 26 F -0.19 -2.68 16.84 2.25 0.04 -2.64 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.73 5.63 -51.93 -0.29 0.44 16 29 H 0.05 1.16 7.88 -51.93 -0.41 0.76 16 30 H 0.08 2.12 6.65 -51.93 -0.35 1.78 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 33 H 0.39 6.44 8.01 -40.82 -0.33 6.12 16 34 H 0.11 1.31 7.67 -51.93 -0.40 0.91 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 1.29 5.12 -51.93 -0.27 1.02 16 40 H 0.15 2.30 5.36 -51.93 -0.28 2.02 16 41 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 42 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -29.20 333.38 -6.83 -36.03 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.05 Total: 7.52 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 0.05 Total: 3.35 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.58 Total: -45.45 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.32 Total: -16.59 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.07 Total: -4.99 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.20 -6.83 -36.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356050738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.727 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds