Wall clock time and date at job start Tue Mar 31 2020 09:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46844 * 2 1 4 4 H 1.09002 * 109.47611 * 303.40051 * 3 2 1 5 5 C 1.50707 * 109.46986 * 183.39999 * 3 2 1 6 6 H 1.07999 * 119.99687 * 274.78413 * 5 3 2 7 7 C 1.37876 * 119.99921 * 95.06601 * 5 3 2 8 8 N 1.31514 * 119.99651 * 184.70466 * 7 5 3 9 9 Si 1.86802 * 120.00132 * 4.69583 * 7 5 3 10 10 H 1.48503 * 109.46777 * 84.65728 * 9 7 5 11 11 H 1.48504 * 109.47001 * 204.65814 * 9 7 5 12 12 H 1.48499 * 109.47016 * 324.65673 * 9 7 5 13 13 N 1.46499 * 109.47472 * 63.39861 * 3 2 1 14 14 C 1.34773 * 120.00110 * 275.00267 * 13 3 2 15 15 O 1.21280 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00073 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.50864 * 27.80879 * 16 14 13 18 18 C 1.53098 * 109.50814 * 267.72468 * 16 14 13 19 19 O 1.43010 * 109.26362 * 183.21822 * 18 16 14 20 20 C 1.43016 * 113.73826 * 58.66588 * 19 18 16 21 21 C 1.53099 * 109.25784 * 301.33297 * 20 19 18 22 22 N 1.47011 * 109.25906 * 56.85032 * 21 20 19 23 23 C 1.46896 * 111.00240 * 177.60372 * 22 21 20 24 24 C 1.52997 * 109.47491 * 286.61335 * 23 22 21 25 25 F 1.39908 * 109.46743 * 302.52901 * 24 23 22 26 26 F 1.39901 * 109.47133 * 62.52660 * 24 23 22 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47155 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.47214 * 60.00436 * 1 2 3 30 30 H 1.08998 * 109.47155 * 240.00359 * 2 1 3 31 31 H 1.08993 * 109.47168 * 119.99914 * 2 1 3 32 32 H 0.97001 * 119.99969 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00048 * 94.99601 * 13 3 2 34 34 H 1.09005 * 109.50417 * 303.15412 * 18 16 14 35 35 H 1.09005 * 109.50676 * 63.23131 * 18 16 14 36 36 H 1.08998 * 109.50491 * 61.27158 * 20 19 18 37 37 H 1.09003 * 109.50648 * 181.39899 * 20 19 18 38 38 H 1.09005 * 109.50639 * 176.78117 * 21 20 19 39 39 H 1.08995 * 109.50705 * 296.91374 * 21 20 19 40 40 H 1.09005 * 109.47124 * 46.61129 * 23 22 21 41 41 H 1.08996 * 109.47433 * 166.60707 * 23 22 21 42 42 H 1.09000 * 109.47983 * 182.53182 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9737 -0.8579 5 6 3.5447 1.4434 -0.0843 6 1 4.1358 1.3472 0.8144 7 6 4.1665 1.5727 -1.3080 8 7 5.4757 1.4808 -1.3933 9 14 3.1495 1.8782 -2.8449 10 1 2.8806 3.3325 -2.9794 11 1 3.8968 1.4006 -4.0360 12 1 1.8627 1.1444 -2.7408 13 7 1.6196 2.1091 1.2350 14 6 0.3998 2.6768 1.3128 15 8 -0.3498 2.6363 0.3602 16 6 -0.0328 3.3621 2.5833 17 1 0.8440 3.7373 3.1112 18 6 -0.7776 2.3643 3.4742 19 8 -1.2508 3.0378 4.6437 20 6 -2.1250 4.1342 4.3627 21 6 -1.3938 5.1499 3.4808 22 7 -0.9271 4.4823 2.2570 23 6 -0.2682 5.4365 1.3553 24 6 -1.3220 6.3358 0.7059 25 9 -2.2537 5.5451 0.0245 26 9 -1.9754 7.0782 1.6954 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.9132 1.5714 -2.2543 33 1 2.2192 2.1418 1.9967 34 1 -1.6233 1.9482 2.9266 35 1 -0.1012 1.5604 3.7649 36 1 -3.0099 3.7696 3.8410 37 1 -2.4229 4.6108 5.2966 38 1 -2.0744 5.9594 3.2169 39 1 -0.5393 5.5542 4.0233 40 1 0.4319 6.0492 1.9234 41 1 0.2715 4.8915 0.5809 42 1 -0.8379 7.0139 0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356050742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:27 Heat of formation + Delta-G solvation = -174.992982 kcal Electronic energy + Delta-G solvation = -27433.381222 eV Core-core repulsion = 23277.443937 eV Total energy + Delta-G solvation = -4155.937286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.92500 -46.86656 -40.34084 -38.51307 -36.03152 -35.03915 -32.51408 -31.97234 -30.90241 -30.41752 -27.63806 -26.28599 -24.78241 -22.86452 -22.45063 -21.46230 -19.97101 -19.61561 -17.97859 -17.43665 -17.23870 -16.78453 -16.31392 -16.20049 -16.00398 -15.59507 -14.99280 -14.74061 -14.30669 -14.08557 -14.02684 -13.84438 -13.63901 -13.22194 -12.94099 -12.83503 -12.64742 -12.39324 -12.06045 -11.95870 -11.84129 -11.79782 -11.52226 -11.17751 -11.01565 -10.71478 -10.70314 -10.54540 -10.08125 -9.90816 -9.79552 -9.28198 -9.09186 -8.76822 -8.55142 -8.08350 -6.30094 -4.34144 3.00471 3.20111 3.28918 3.35342 3.36355 3.62352 3.82168 4.02831 4.20205 4.26012 4.48304 4.76430 4.85349 4.89352 4.98342 4.99433 5.09327 5.15170 5.35856 5.37605 5.50033 5.57750 5.59589 5.70938 5.82727 6.01440 6.05008 6.20820 6.54816 6.58346 6.71813 6.75824 6.91372 6.95518 6.96881 7.24197 7.28694 7.49122 8.06412 8.48445 8.70567 8.88959 9.31693 10.81467 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.005063 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.414183 B = 5529.046256 C = 6348.713157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.238 3.762 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.702 5.702 14 C 0.502 3.498 15 O -0.524 6.524 16 C 0.030 3.970 17 H 0.067 0.933 18 C 0.079 3.921 19 O -0.382 6.382 20 C 0.063 3.937 21 C 0.000 4.000 22 N -0.506 5.506 23 C -0.001 4.001 24 C 0.274 3.726 25 F -0.188 7.188 26 F -0.209 7.209 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.268 0.732 33 H 0.392 0.608 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 8.035 9.068 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.136 3.864 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.352 5.352 14 C 0.285 3.715 15 O -0.401 6.401 16 C -0.082 4.082 17 H 0.085 0.915 18 C 0.002 3.998 19 O -0.300 6.300 20 C -0.014 4.014 21 C -0.128 4.128 22 N -0.232 5.232 23 C -0.130 4.130 24 C 0.220 3.780 25 F -0.170 7.170 26 F -0.190 7.190 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.226 0.774 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.131 0.869 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.829 7.738 8.178 17.068 hybrid contribution 0.590 0.649 -0.350 0.944 sum -12.238 8.386 7.828 16.774 Atomic orbital electron populations 1.21901 0.97318 0.98924 1.01985 1.22069 0.93690 0.99376 1.01297 1.19175 0.95041 0.88947 0.83242 0.93169 1.21005 0.88434 1.52052 0.95471 0.90347 1.24936 0.94783 0.93656 0.98864 1.69880 1.08408 1.48196 1.25839 0.86921 0.81035 0.79516 0.82642 1.19964 1.21162 1.18285 1.46718 1.14686 1.55448 1.18300 1.20010 0.82823 0.80133 0.88555 1.90719 1.52719 1.58797 1.37839 1.22420 0.95782 0.93809 0.96163 0.91475 1.22527 0.98612 0.93033 0.85642 1.87990 1.65416 1.46203 1.30358 1.22689 0.92557 0.86919 0.99211 1.23322 1.00767 0.98403 0.90308 1.61877 1.38248 1.08545 1.14511 1.23319 0.95209 0.95557 0.98893 1.21878 0.84531 0.86993 0.84634 1.93038 1.68291 1.75819 1.79808 1.92838 1.84026 1.78053 1.64130 0.95052 0.93392 0.92939 0.92130 0.92925 0.92189 0.77433 0.91303 0.87712 0.91997 0.88289 0.87258 0.93747 0.91601 0.86886 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.48 37.16 0.32 -2.45 16 2 C -0.13 -2.60 5.60 -26.73 -0.15 -2.75 16 3 C 0.24 5.32 1.92 -69.08 -0.13 5.18 16 4 H 0.05 1.23 4.74 -51.93 -0.25 0.99 16 5 C -0.53 -13.63 9.05 -34.44 -0.31 -13.95 16 6 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 7 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 8 N -0.89 -25.39 13.96 55.43 0.77 -24.62 16 9 Si 0.87 20.88 26.98 -169.99 -4.59 16.29 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.26 -6.12 6.83 56.52 0.39 -5.73 16 13 N -0.70 -13.00 5.00 -54.93 -0.27 -13.27 16 14 C 0.50 8.83 4.06 -10.99 -0.04 8.78 16 15 O -0.52 -10.95 13.04 5.56 0.07 -10.87 16 16 C 0.03 0.43 2.37 -68.75 -0.16 0.27 16 17 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.08 1.05 6.27 37.21 0.23 1.28 16 19 O -0.38 -4.91 10.83 -35.23 -0.38 -5.29 16 20 C 0.06 0.69 7.01 37.21 0.26 0.95 16 21 C 0.00 0.00 5.34 -3.71 -0.02 -0.02 16 22 N -0.51 -7.00 4.12 -227.73 -0.94 -7.94 16 23 C 0.00 -0.01 5.06 -3.83 -0.02 -0.03 16 24 C 0.27 3.25 5.58 37.16 0.21 3.45 16 25 F -0.19 -2.92 17.22 2.25 0.04 -2.88 16 26 F -0.21 -2.43 14.37 2.25 0.03 -2.40 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.90 5.68 -51.93 -0.30 0.60 16 29 H 0.05 1.09 7.75 -51.93 -0.40 0.69 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.39 6.48 8.59 -40.82 -0.35 6.13 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.11 1.20 5.31 -51.93 -0.28 0.92 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 41 H 0.11 1.74 6.09 -51.93 -0.32 1.42 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -30.74 336.73 -6.21 -36.95 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.10 Total: 6.13 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 0.08 Total: 2.83 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.44 Total: -45.83 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.31 Total: -16.17 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.07 Total: -5.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.59 Total: 16.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.74 -6.21 -36.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356050742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.044 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds