Wall clock time and date at job start Tue Mar 31 2020 09:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46919 * 2 1 4 4 C 1.52995 * 109.46732 * 240.00112 * 2 1 3 5 5 O 1.45200 * 109.46953 * 120.00186 * 2 1 3 6 6 C 1.34629 * 117.00329 * 60.00365 * 5 2 1 7 7 O 1.21517 * 120.00073 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00287 * 179.97438 * 6 5 2 9 9 C 1.46964 * 120.59048 * 359.97438 * 8 6 5 10 10 C 1.53368 * 108.63673 * 235.22245 * 9 8 6 11 11 N 1.46957 * 108.63673 * 310.57968 * 10 9 8 12 12 C 1.36933 * 120.59779 * 235.20368 * 11 10 9 13 13 H 1.07992 * 120.00369 * 149.46001 * 12 11 10 14 14 C 1.38820 * 119.99723 * 329.45765 * 12 11 10 15 15 N 1.31617 * 120.00142 * 162.95489 * 14 12 11 16 16 Si 1.86803 * 119.99940 * 342.95912 * 14 12 11 17 17 H 1.48500 * 109.47145 * 94.65230 * 16 14 12 18 18 H 1.48497 * 109.46984 * 214.65581 * 16 14 12 19 19 H 1.48499 * 109.47036 * 334.65734 * 16 14 12 20 20 C 1.46970 * 118.81243 * 55.22725 * 11 10 9 21 21 H 1.08999 * 109.61263 * 64.68714 * 20 11 10 22 22 C 1.52994 * 109.61118 * 185.02940 * 20 11 10 23 23 F 1.39898 * 109.47266 * 59.65515 * 22 20 11 24 24 F 1.39902 * 109.47066 * 299.65599 * 22 20 11 25 25 C 1.47036 * 120.45181 * 180.09627 * 8 6 5 26 26 H 1.08998 * 109.46856 * 299.99530 * 1 2 3 27 27 H 1.08993 * 109.47368 * 60.00063 * 1 2 3 28 28 H 1.09002 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47014 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47534 * 300.00160 * 3 2 1 31 31 H 1.09005 * 109.47239 * 60.00300 * 3 2 1 32 32 H 1.09002 * 109.47453 * 299.99912 * 4 2 1 33 33 H 1.09000 * 109.47552 * 60.00114 * 4 2 1 34 34 H 1.09004 * 109.47313 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.60453 * 115.47721 * 9 8 6 36 36 H 1.09005 * 109.61264 * 354.97574 * 9 8 6 37 37 H 1.08992 * 109.60944 * 190.83133 * 10 9 8 38 38 H 1.09007 * 109.60494 * 70.32501 * 10 9 8 39 39 H 0.97000 * 119.99900 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.47259 * 179.65673 * 22 20 11 41 41 H 1.09001 * 109.77531 * 5.13637 * 25 8 6 42 42 H 1.09004 * 109.49140 * 244.59825 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5039 8 7 2.0682 -2.6658 2.4166 9 6 2.9171 -2.0292 3.4334 10 6 4.1884 -2.8695 3.6064 11 7 3.8010 -4.2756 3.7865 12 6 4.2237 -4.9803 4.8819 13 1 3.6090 -5.7711 5.2855 14 6 5.4426 -4.6781 5.4735 15 7 5.7048 -5.0991 6.6926 16 14 6.7108 -3.6738 4.5393 17 1 6.5728 -2.2406 4.9030 18 1 8.0738 -4.1453 4.8929 19 1 6.4937 -3.8370 3.0794 20 6 2.9521 -4.9123 2.7696 21 1 3.4909 -4.9641 1.8235 22 6 2.5765 -6.3238 3.2247 23 9 1.8853 -6.2540 4.4389 24 9 3.7387 -7.0843 3.3928 25 6 1.6808 -4.0733 2.5923 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2496 35 1 2.3794 -1.9800 4.3803 36 1 3.1846 -1.0234 3.1092 37 1 4.7373 -2.5262 4.4832 38 1 4.8141 -2.7732 2.7191 39 1 6.5567 -4.8882 7.1059 40 1 1.9420 -6.7916 2.4718 41 1 1.1349 -4.4179 1.7140 42 1 1.0525 -4.1698 3.4778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377600472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:12 Heat of formation + Delta-G solvation = -139.857220 kcal Electronic energy + Delta-G solvation = -27642.428776 eV Core-core repulsion = 23488.015091 eV Total energy + Delta-G solvation = -4154.413685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.17088 -46.07565 -40.73355 -38.36340 -36.52449 -34.45631 -33.65322 -32.09615 -31.16619 -27.63663 -27.49374 -27.45730 -25.79658 -23.71056 -22.90544 -21.81652 -20.06272 -19.13103 -17.96729 -17.21955 -16.68559 -16.44589 -16.25028 -16.19671 -15.37836 -15.00897 -14.74698 -14.40644 -14.27242 -14.12173 -13.66780 -13.44253 -13.12784 -12.79358 -12.66070 -12.58782 -12.41837 -12.24321 -12.17429 -12.04769 -11.97807 -11.84638 -11.55586 -11.47687 -11.32211 -11.08928 -10.89028 -10.39784 -10.37235 -10.15039 -10.08271 -9.78649 -9.41631 -8.86154 -8.46141 -7.04998 -5.95142 -3.40318 2.25219 2.98444 3.25919 3.45291 3.45732 3.91639 4.34942 4.47745 4.62765 4.64146 4.67285 4.81404 4.83486 5.05248 5.24869 5.33620 5.34470 5.42078 5.46464 5.53981 5.56985 5.61455 5.67165 5.72919 5.76467 5.80414 5.85970 5.88725 5.97945 6.20356 6.22061 6.25191 6.32313 6.49092 6.55110 6.67168 7.58333 7.81426 8.30085 8.48389 8.84059 9.64068 9.92900 11.19422 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.005194 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.035748 B = 5389.235866 C = 6365.969058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.652 3.348 7 O -0.580 6.580 8 N -0.582 5.582 9 C 0.094 3.906 10 C 0.115 3.885 11 N -0.595 5.595 12 C -0.273 4.273 13 H 0.107 0.893 14 C 0.033 3.967 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.288 1.288 18 H -0.301 1.301 19 H -0.270 1.270 20 C 0.108 3.892 21 H 0.063 0.937 22 C 0.283 3.717 23 F -0.196 7.196 24 F -0.187 7.187 25 C 0.116 3.884 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 9.018 -13.139 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.407 3.593 7 O -0.471 6.471 8 N -0.321 5.321 9 C -0.030 4.030 10 C -0.011 4.011 11 N -0.319 5.319 12 C -0.400 4.400 13 H 0.124 0.876 14 C -0.166 4.166 15 N -0.546 5.546 16 Si 0.708 3.292 17 H -0.216 1.216 18 H -0.230 1.230 19 H -0.195 1.195 20 C 0.000 4.000 21 H 0.080 0.920 22 C 0.228 3.772 23 F -0.177 7.177 24 F -0.168 7.168 25 C -0.008 4.008 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.988 8.876 -13.238 18.298 hybrid contribution 1.004 0.623 -0.356 1.234 sum -7.984 9.499 -13.594 18.405 Atomic orbital electron populations 1.22504 0.94159 1.05064 1.02176 1.22014 0.94265 0.91495 0.82437 1.21849 1.02299 0.92694 1.02904 1.22506 1.01578 1.03550 0.96338 1.86306 1.71514 1.23868 1.45971 1.17950 0.78887 0.80471 0.81976 1.90839 1.42265 1.70493 1.43461 1.46800 1.52292 1.11733 1.21235 1.22422 0.92941 0.96555 0.91058 1.21790 0.94055 0.84722 1.00488 1.44215 1.58833 1.06319 1.22578 1.19328 1.01366 1.17551 1.01797 0.87565 1.25325 0.96774 0.98266 0.96272 1.69780 1.24108 1.48190 1.12480 0.87047 0.81930 0.79050 0.81200 1.21602 1.22957 1.19502 1.21993 0.92959 0.90766 0.94325 0.91999 1.21502 0.80693 0.91475 0.83546 1.92942 1.79262 1.97000 1.48498 1.93029 1.51038 1.76714 1.96056 1.22128 0.97043 0.78627 1.02987 0.92284 0.91424 0.89315 0.91483 0.90358 0.91504 0.89311 0.91423 0.92238 0.90574 0.89632 0.89439 0.94773 0.92688 0.88348 0.88666 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 2 C 0.13 1.59 1.13 -90.62 -0.10 1.49 16 3 C -0.14 -1.25 8.85 37.16 0.33 -0.93 16 4 C -0.18 -2.09 8.37 37.15 0.31 -1.78 16 5 O -0.36 -5.37 8.52 -40.29 -0.34 -5.71 16 6 C 0.65 10.74 7.73 54.06 0.42 11.16 16 7 O -0.58 -9.99 11.28 -19.29 -0.22 -10.20 16 8 N -0.58 -9.82 2.95 -178.23 -0.53 -10.35 16 9 C 0.09 1.61 6.61 -3.60 -0.02 1.59 16 10 C 0.12 2.38 4.33 -3.60 -0.02 2.36 16 11 N -0.59 -13.43 2.71 -164.53 -0.45 -13.88 16 12 C -0.27 -7.33 8.05 -15.06 -0.12 -7.45 16 13 H 0.11 3.10 5.23 -52.49 -0.27 2.82 16 14 C 0.03 0.94 5.28 -17.43 -0.09 0.85 16 15 N -0.90 -27.36 13.97 55.49 0.78 -26.58 16 16 Si 0.88 21.79 24.36 -169.99 -4.14 17.65 16 17 H -0.29 -6.81 6.74 56.52 0.38 -6.43 16 18 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 19 H -0.27 -6.61 6.35 56.52 0.36 -6.25 16 20 C 0.11 2.01 3.25 -67.50 -0.22 1.80 16 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 22 C 0.28 5.03 4.55 37.15 0.17 5.20 16 23 F -0.20 -3.93 14.40 2.25 0.03 -3.90 16 24 F -0.19 -4.02 15.50 2.25 0.03 -3.98 16 25 C 0.12 1.89 5.88 -3.57 -0.02 1.87 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.31 6.91 -51.93 -0.36 0.95 16 37 H 0.09 1.94 4.58 -51.93 -0.24 1.71 16 38 H 0.03 0.71 6.96 -51.93 -0.36 0.35 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.10 1.41 6.99 -51.93 -0.36 1.04 16 42 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -32.06 326.02 -5.00 -37.06 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.02 Total: 0.54 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 0.94 Total: 14.44 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.20 Total: -50.81 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.56 Total: -15.92 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.06 -5.00 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377600472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.799 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds