Wall clock time and date at job start Tue Mar 31 2020 09:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46919 * 2 1 4 4 C 1.52995 * 109.46732 * 240.00112 * 2 1 3 5 5 O 1.45200 * 109.46953 * 120.00186 * 2 1 3 6 6 C 1.34629 * 117.00329 * 60.00365 * 5 2 1 7 7 O 1.21517 * 120.00073 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00287 * 179.97438 * 6 5 2 9 9 C 1.46964 * 120.59048 * 359.97438 * 8 6 5 10 10 C 1.53368 * 108.63673 * 235.22245 * 9 8 6 11 11 N 1.46957 * 108.63673 * 310.57968 * 10 9 8 12 12 C 1.36933 * 120.59779 * 235.20368 * 11 10 9 13 13 H 1.07992 * 120.00369 * 149.46001 * 12 11 10 14 14 C 1.38820 * 119.99723 * 329.45765 * 12 11 10 15 15 N 1.31617 * 120.00142 * 162.95489 * 14 12 11 16 16 Si 1.86803 * 119.99940 * 342.95912 * 14 12 11 17 17 H 1.48500 * 109.47145 * 94.65230 * 16 14 12 18 18 H 1.48497 * 109.46984 * 214.65581 * 16 14 12 19 19 H 1.48499 * 109.47036 * 334.65734 * 16 14 12 20 20 C 1.46970 * 118.81243 * 55.22725 * 11 10 9 21 21 H 1.08999 * 109.61263 * 64.68714 * 20 11 10 22 22 C 1.52994 * 109.61118 * 185.02940 * 20 11 10 23 23 F 1.39898 * 109.47266 * 59.65515 * 22 20 11 24 24 F 1.39902 * 109.47066 * 299.65599 * 22 20 11 25 25 C 1.47036 * 120.45181 * 180.09627 * 8 6 5 26 26 H 1.08998 * 109.46856 * 299.99530 * 1 2 3 27 27 H 1.08993 * 109.47368 * 60.00063 * 1 2 3 28 28 H 1.09002 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47014 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47534 * 300.00160 * 3 2 1 31 31 H 1.09005 * 109.47239 * 60.00300 * 3 2 1 32 32 H 1.09002 * 109.47453 * 299.99912 * 4 2 1 33 33 H 1.09000 * 109.47552 * 60.00114 * 4 2 1 34 34 H 1.09004 * 109.47313 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.60453 * 115.47721 * 9 8 6 36 36 H 1.09005 * 109.61264 * 354.97574 * 9 8 6 37 37 H 1.08992 * 109.60944 * 190.83133 * 10 9 8 38 38 H 1.09007 * 109.60494 * 70.32501 * 10 9 8 39 39 H 0.97000 * 119.99900 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.47259 * 179.65673 * 22 20 11 41 41 H 1.09001 * 109.77531 * 5.13637 * 25 8 6 42 42 H 1.09004 * 109.49140 * 244.59825 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5039 8 7 2.0682 -2.6658 2.4166 9 6 2.9171 -2.0292 3.4334 10 6 4.1884 -2.8695 3.6064 11 7 3.8010 -4.2756 3.7865 12 6 4.2237 -4.9803 4.8819 13 1 3.6090 -5.7711 5.2855 14 6 5.4426 -4.6781 5.4735 15 7 5.7048 -5.0991 6.6926 16 14 6.7108 -3.6738 4.5393 17 1 6.5728 -2.2406 4.9030 18 1 8.0738 -4.1453 4.8929 19 1 6.4937 -3.8370 3.0794 20 6 2.9521 -4.9123 2.7696 21 1 3.4909 -4.9641 1.8235 22 6 2.5765 -6.3238 3.2247 23 9 1.8853 -6.2540 4.4389 24 9 3.7387 -7.0843 3.3928 25 6 1.6808 -4.0733 2.5923 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2496 35 1 2.3794 -1.9800 4.3803 36 1 3.1846 -1.0234 3.1092 37 1 4.7373 -2.5262 4.4832 38 1 4.8141 -2.7732 2.7191 39 1 6.5567 -4.8882 7.1059 40 1 1.9420 -6.7916 2.4718 41 1 1.1349 -4.4179 1.7140 42 1 1.0525 -4.1698 3.4778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377600472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:11 Heat of formation + Delta-G solvation = -161.162096 kcal Electronic energy + Delta-G solvation = -27643.352624 eV Core-core repulsion = 23488.015091 eV Total energy + Delta-G solvation = -4155.337533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.70686 -47.64269 -41.92346 -39.72036 -37.82097 -35.87595 -34.88146 -33.73478 -32.93177 -29.28835 -28.31883 -28.26161 -27.16040 -25.51208 -24.42836 -23.06001 -21.49059 -20.39806 -19.44698 -18.73957 -18.05101 -17.97481 -17.62154 -17.51544 -16.94132 -16.51995 -16.11974 -15.80015 -15.47155 -15.39643 -15.25893 -14.59784 -14.49708 -14.41583 -14.29017 -14.08454 -13.94656 -13.56739 -13.34250 -13.12147 -13.06884 -12.84762 -12.82808 -12.71950 -12.50766 -12.43727 -12.29430 -12.21506 -11.85189 -11.71465 -11.35928 -11.29386 -11.01252 -10.79141 -10.00606 -8.90111 -8.10248 -5.51135 1.07718 1.27720 1.41988 1.48316 1.72962 2.42369 2.71723 2.87630 3.15842 3.20494 3.48716 3.63132 3.78928 3.84156 3.94184 3.98967 4.09002 4.20376 4.25897 4.28796 4.46661 4.54528 4.60127 4.65081 4.65758 4.77431 4.80406 4.85260 4.89791 4.91438 5.00126 5.13258 5.29291 5.32629 5.39837 5.47866 5.85697 6.20053 6.31469 6.82976 7.24462 7.55973 7.91979 9.08360 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.005194 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.035748 B = 5389.235866 C = 6365.969058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.654 3.346 7 O -0.588 6.588 8 N -0.588 5.588 9 C 0.108 3.892 10 C 0.111 3.889 11 N -0.611 5.611 12 C -0.246 4.246 13 H 0.077 0.923 14 C -0.029 4.029 15 N -0.956 5.956 16 Si 0.938 3.062 17 H -0.270 1.270 18 H -0.316 1.316 19 H -0.263 1.263 20 C 0.104 3.896 21 H 0.071 0.929 22 C 0.270 3.730 23 F -0.212 7.212 24 F -0.213 7.213 25 C 0.126 3.874 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.260 0.740 40 H 0.163 0.837 41 H 0.116 0.884 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 11.050 -15.778 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.085 3.915 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.283 6.283 6 C 0.409 3.591 7 O -0.479 6.479 8 N -0.328 5.328 9 C -0.016 4.016 10 C -0.014 4.014 11 N -0.336 5.336 12 C -0.375 4.375 13 H 0.095 0.905 14 C -0.224 4.224 15 N -0.603 5.603 16 Si 0.767 3.233 17 H -0.196 1.196 18 H -0.246 1.246 19 H -0.188 1.188 20 C -0.004 4.004 21 H 0.089 0.911 22 C 0.216 3.784 23 F -0.193 7.193 24 F -0.194 7.194 25 C 0.003 3.997 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.179 0.821 41 H 0.134 0.866 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.096 10.946 -15.932 21.808 hybrid contribution 1.201 -0.002 0.359 1.254 sum -8.894 10.944 -15.573 21.009 Atomic orbital electron populations 1.22455 0.93667 1.03753 1.03560 1.22465 0.94858 0.92677 0.81453 1.21883 1.02273 0.90722 1.04371 1.22465 1.01364 1.02330 0.97431 1.86315 1.71548 1.22907 1.47509 1.17979 0.78606 0.81014 0.81476 1.90846 1.42553 1.70931 1.43592 1.46830 1.52483 1.11983 1.21470 1.22205 0.91215 0.96787 0.91418 1.21798 0.95769 0.84207 0.99652 1.44313 1.59249 1.07302 1.22728 1.19187 1.00315 1.15904 1.02130 0.90523 1.25914 0.98888 1.00612 0.96953 1.69920 1.24556 1.51466 1.14314 0.86058 0.78548 0.78647 0.80010 1.19627 1.24570 1.18797 1.22245 0.93247 0.91511 0.93365 0.91113 1.22215 0.80645 0.91448 0.84070 1.92906 1.79405 1.97065 1.49957 1.92974 1.52857 1.77326 1.96232 1.22001 0.95604 0.78278 1.03832 0.92124 0.88864 0.91851 0.91563 0.87700 0.91245 0.91858 0.88807 0.92495 0.90711 0.87412 0.91198 0.94520 0.93120 0.82061 0.86585 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 8.37 71.98 0.60 -2.83 16 2 C 0.12 2.51 1.13 -10.79 -0.01 2.49 16 3 C -0.14 -1.93 8.85 71.98 0.64 -1.29 16 4 C -0.18 -3.62 8.37 71.98 0.60 -3.01 16 5 O -0.37 -9.97 8.52 -55.38 -0.47 -10.45 16 6 C 0.65 20.02 7.73 129.79 1.00 21.02 16 7 O -0.59 -19.02 11.28 19.79 0.22 -18.79 16 8 N -0.59 -18.55 2.95 -948.20 -2.80 -21.35 16 9 C 0.11 3.47 6.61 86.41 0.57 4.04 16 10 C 0.11 4.42 4.33 86.42 0.37 4.79 16 11 N -0.61 -27.13 2.71 -674.44 -1.83 -28.96 16 12 C -0.25 -13.42 8.05 84.04 0.68 -12.75 16 13 H 0.08 4.61 5.23 -2.91 -0.02 4.60 16 14 C -0.03 -1.68 5.28 84.86 0.45 -1.23 16 15 N -0.96 -59.99 13.97 21.65 0.30 -59.68 16 16 Si 0.94 45.71 24.36 68.60 1.67 47.38 16 17 H -0.27 -12.17 6.74 99.48 0.67 -11.49 16 18 H -0.32 -16.05 7.11 99.48 0.71 -15.34 16 19 H -0.26 -12.34 6.35 99.48 0.63 -11.71 16 20 C 0.10 3.69 3.25 45.02 0.15 3.84 16 21 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 22 C 0.27 9.23 4.55 71.98 0.33 9.55 16 23 F -0.21 -8.45 14.40 44.97 0.65 -7.81 16 24 F -0.21 -9.09 15.50 44.97 0.70 -8.39 16 25 C 0.13 3.83 5.88 86.39 0.51 4.34 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 1.63 5.88 -2.39 -0.01 1.61 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.11 3.00 6.91 -2.38 -0.02 2.98 16 37 H 0.07 3.03 4.58 -2.39 -0.01 3.02 16 38 H 0.04 1.45 6.96 -2.38 -0.02 1.43 16 39 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.16 3.51 8.14 -2.38 -0.02 3.49 16 41 H 0.12 3.07 6.99 -2.39 -0.02 3.05 16 42 H 0.08 2.48 7.54 -2.39 -0.02 2.46 16 Total: -1.00 -71.32 326.02 5.25 -66.07 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.92 Total: 13.00 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 5.89 Total: 28.97 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -4.33 Total: -109.99 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.25 Total: -29.24 kcal Atomic # 9 Polarization: -17.54 SS G_CDS: 1.34 Total: -16.19 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.67 Total: 47.38 kcal Total: -71.32 5.25 -66.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377600472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.089 kcal (2) G-P(sol) polarization free energy of solvation -71.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds