Wall clock time and date at job start Tue Mar 31 2020 08:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46694 * 2 1 4 4 C 1.52998 * 109.47465 * 240.00247 * 2 1 3 5 5 C 1.50699 * 109.47175 * 59.99412 * 4 2 1 6 6 H 1.08006 * 120.00081 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00519 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00042 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.47008 * 89.99718 * 9 7 5 11 11 H 1.48492 * 109.47705 * 210.00149 * 9 7 5 12 12 H 1.48504 * 109.47180 * 330.00552 * 9 7 5 13 13 C 1.52995 * 109.47203 * 119.99486 * 2 1 3 14 14 N 1.46497 * 109.47704 * 300.00523 * 13 2 1 15 15 C 1.34777 * 120.00280 * 179.97438 * 14 13 2 16 16 O 1.21689 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.46427 * 119.99875 * 180.02562 * 15 14 13 18 18 C 1.34803 * 119.99860 * 187.35851 * 17 15 14 19 19 C 1.47215 * 119.99911 * 10.04308 * 18 17 15 20 20 C 1.39836 * 120.57563 * 43.92412 * 19 18 17 21 21 N 1.31625 * 120.58600 * 180.28458 * 20 19 18 22 22 C 1.31957 * 121.92540 * 359.74102 * 21 20 19 23 23 C 1.38577 * 121.10593 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.36166 * 179.97438 * 23 22 21 25 25 C 1.38546 * 119.28318 * 359.97438 * 23 22 21 26 26 H 1.08996 * 109.47277 * 299.99995 * 1 2 3 27 27 H 1.09000 * 109.47155 * 60.00509 * 1 2 3 28 28 H 1.09007 * 109.46337 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46727 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47154 * 300.00096 * 3 2 1 31 31 H 1.09006 * 109.46761 * 59.99809 * 3 2 1 32 32 H 1.09003 * 109.47307 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46762 * 299.99816 * 4 2 1 34 34 H 0.96999 * 120.00540 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46969 * 180.02562 * 13 2 1 36 36 H 1.09007 * 109.46994 * 60.00991 * 13 2 1 37 37 H 0.97001 * 119.99538 * 359.97438 * 14 13 2 38 38 H 1.07995 * 120.00014 * 7.35951 * 17 15 14 39 39 H 1.07997 * 120.00104 * 190.03940 * 18 17 15 40 40 H 1.08004 * 119.70515 * 0.04674 * 20 19 18 41 41 H 1.08004 * 119.44102 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.87814 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 1.4324 0.1380 -4.8058 9 14 2.9445 -2.0008 -3.9034 10 1 2.0861 -3.2118 -3.9481 11 1 3.7360 -1.9085 -5.1564 12 1 3.8653 -2.0896 -2.7417 13 6 2.0401 -0.7211 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4913 3.6695 16 8 2.5766 -1.4806 3.7812 17 6 1.3883 0.1986 4.8651 18 6 1.8311 -0.1694 6.0840 19 6 2.9613 -1.1050 6.2049 20 6 4.0953 -0.9584 5.4000 21 7 5.1036 -1.7981 5.5040 22 6 5.0923 -2.7989 6.3639 23 6 4.0087 -3.0111 7.2013 24 9 4.0129 -4.0409 8.0758 25 6 2.9210 -2.1558 7.1321 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6765 1.9564 0.8900 32 1 3.1302 -0.7208 -1.2494 33 1 1.6768 -1.7488 -1.2492 34 1 1.6662 -0.1937 -5.6868 35 1 3.1301 -0.7207 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9943 0.7583 2.3564 38 1 0.6732 1.0023 4.7704 39 1 1.3568 0.2221 6.9717 40 1 4.1426 -0.1513 4.6838 41 1 5.9418 -3.4638 6.4159 42 1 2.0628 -2.2975 7.7723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493329058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:28 Heat of formation + Delta-G solvation = -32.866891 kcal Electronic energy + Delta-G solvation = -24479.308602 eV Core-core repulsion = 20760.303591 eV Total energy + Delta-G solvation = -3719.005011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.13085 -40.59013 -39.43184 -37.37711 -34.61232 -33.73362 -32.18740 -31.94682 -30.13617 -27.89651 -26.66554 -26.60777 -24.53750 -23.89320 -22.80400 -21.55292 -19.95328 -18.39469 -17.79216 -17.29194 -17.14651 -16.84159 -16.66841 -15.95538 -15.54201 -15.13899 -14.68962 -14.25485 -14.08341 -13.78180 -13.69225 -13.51786 -13.44253 -13.26759 -12.87805 -12.75857 -12.38638 -12.32568 -12.25851 -11.29089 -11.17682 -11.03632 -10.69274 -10.64794 -10.53546 -10.18542 -10.01262 -9.77794 -9.75281 -9.62812 -9.50661 -9.02746 -8.85656 -8.55631 -8.47816 -6.06442 -4.03974 0.25584 0.94010 1.42305 3.19050 3.30263 3.31387 3.38707 3.42773 3.53562 3.84012 4.22604 4.39077 4.43977 4.49932 4.62075 4.69337 4.94918 5.04293 5.25996 5.31972 5.45515 5.47768 5.58154 5.59079 5.68718 5.80582 5.93369 6.05083 6.06425 6.15127 6.26002 6.40227 6.45164 6.54926 6.62321 6.85291 6.97547 7.01125 7.16772 7.33269 7.56493 7.72120 7.76517 8.23339 8.50175 8.97246 9.56312 11.06234 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.002932 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.680490 B = 9548.950605 C =10393.889577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.709 5.709 15 C 0.528 3.472 16 O -0.539 6.539 17 C -0.190 4.190 18 C -0.035 4.035 19 C -0.089 4.089 20 C 0.175 3.825 21 N -0.464 5.464 22 C 0.080 3.920 23 C 0.031 3.969 24 F -0.136 7.136 25 C -0.096 4.096 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.401 0.599 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 0.741 25.084 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.359 5.359 15 C 0.316 3.684 16 O -0.419 6.419 17 C -0.211 4.211 18 C -0.056 4.056 19 C -0.091 4.091 20 C 0.016 3.984 21 N -0.172 5.172 22 C -0.076 4.076 23 C 0.010 3.990 24 F -0.114 7.114 25 C -0.122 4.122 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.237 0.763 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.706 0.093 24.405 24.465 hybrid contribution -0.662 -0.832 0.256 1.094 sum 1.044 -0.739 24.662 24.695 Atomic orbital electron populations 1.21782 0.94800 1.01256 1.00792 1.20696 0.95801 0.95937 0.93916 1.21778 1.00500 0.95527 1.00795 1.19589 0.96314 0.95469 0.92604 1.21069 1.31911 1.13358 0.88613 0.90394 1.24993 0.95671 0.96739 0.95984 1.69895 1.45931 1.40543 0.97901 0.86868 0.81352 0.83900 0.77708 1.20379 1.21461 1.18975 1.21675 0.99012 0.96052 0.83077 1.46173 1.52471 1.31431 1.05853 1.18488 0.80919 0.84916 0.84062 1.90857 1.37981 1.26599 1.86421 1.23183 1.03701 1.01627 0.92595 1.22167 0.92562 0.93324 0.97507 1.19784 0.96087 0.96513 0.96742 1.22848 0.87094 0.96037 0.92394 1.67683 1.28324 1.03323 1.17912 1.22915 0.97015 0.96123 0.91564 1.18572 0.97622 0.88929 0.93925 1.91503 1.96798 1.56145 1.66989 1.21622 0.97838 0.94097 0.98662 0.95018 0.90829 0.93436 0.93348 0.90837 0.95004 0.96338 0.96857 0.92765 0.91583 0.91752 0.76348 0.84309 0.84001 0.82867 0.82012 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.06 -1.10 0.54 -154.50 -0.08 -1.19 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.82 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.50 8.20 -34.44 -0.28 -13.78 16 6 H 0.08 2.17 5.92 -52.48 -0.31 1.86 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 9 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 13 C 0.12 1.97 4.56 -4.05 -0.02 1.96 16 14 N -0.71 -8.79 4.95 -61.70 -0.31 -9.10 16 15 C 0.53 6.58 6.79 -12.96 -0.09 6.49 16 16 O -0.54 -8.62 12.09 5.20 0.06 -8.56 16 17 C -0.19 -1.57 9.93 -37.50 -0.37 -1.94 16 18 C -0.04 -0.27 9.84 -37.15 -0.37 -0.63 16 19 C -0.09 -0.94 4.56 -104.92 -0.48 -1.42 16 20 C 0.18 2.21 7.76 -17.04 -0.13 2.08 16 21 N -0.46 -6.34 10.34 -12.78 -0.13 -6.47 16 22 C 0.08 0.94 11.16 -17.37 -0.19 0.75 16 23 C 0.03 0.35 7.33 -39.34 -0.29 0.06 16 24 F -0.14 -1.49 17.28 2.25 0.04 -1.45 16 25 C -0.10 -0.96 9.93 -38.73 -0.38 -1.35 16 26 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 27 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 28 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 37 H 0.40 4.08 6.14 -40.82 -0.25 3.83 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.15 1.89 7.00 -52.48 -0.37 1.52 16 41 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -32.15 346.03 -6.94 -39.09 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.64 Total: 1.75 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.27 Total: -10.97 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.34 Total: -41.83 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.15 -6.94 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493329058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.220 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds