Wall clock time and date at job start Tue Mar 31 2020 09:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47289 * 2 1 4 4 H 1.09006 * 109.46801 * 304.83236 * 3 2 1 5 5 C 1.50700 * 109.47059 * 184.83675 * 3 2 1 6 6 H 1.08004 * 119.99590 * 240.00191 * 5 3 2 7 7 C 1.37876 * 120.00304 * 59.99430 * 5 3 2 8 8 N 1.31514 * 119.99826 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00047 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46708 * 60.00597 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47454 * 300.00484 * 9 7 5 13 13 N 1.46891 * 109.47110 * 64.83464 * 3 2 1 14 14 C 1.46901 * 111.00148 * 207.83184 * 13 3 2 15 15 H 1.09006 * 110.43334 * 320.39581 * 14 13 3 16 16 C 1.54629 * 110.48940 * 197.70821 * 14 13 3 17 17 C 1.54477 * 101.76522 * 266.11664 * 16 14 13 18 18 N 1.46768 * 105.47646 * 334.58641 * 17 16 14 19 19 C 1.40028 * 124.34975 * 196.99803 * 18 17 16 20 20 C 1.38852 * 120.03932 * 184.44556 * 19 18 17 21 21 C 1.38121 * 119.94957 * 179.76766 * 20 19 18 22 22 C 1.38477 * 120.04491 * 0.50280 * 21 20 19 23 23 F 1.35094 * 119.95371 * 179.72335 * 22 21 20 24 24 C 1.38469 * 120.08912 * 359.74745 * 22 21 20 25 25 C 1.38115 * 120.04550 * 0.02562 * 24 22 21 26 26 C 1.34420 * 111.29447 * 17.01099 * 18 17 16 27 27 O 1.21298 * 124.93576 * 179.62720 * 26 18 17 28 28 H 1.08997 * 109.47282 * 184.82473 * 1 2 3 29 29 H 1.09005 * 109.46779 * 304.82471 * 1 2 3 30 30 H 1.08999 * 109.47266 * 64.82346 * 1 2 3 31 31 H 1.09006 * 109.47000 * 239.99693 * 2 1 3 32 32 H 1.09000 * 109.46943 * 120.00284 * 2 1 3 33 33 H 0.96999 * 119.99422 * 179.97438 * 8 7 5 34 34 H 1.00900 * 111.00248 * 83.87595 * 13 3 2 35 35 H 1.08995 * 110.97103 * 24.23656 * 16 14 13 36 36 H 1.08995 * 110.96796 * 147.99742 * 16 14 13 37 37 H 1.08997 * 110.24839 * 215.58250 * 17 16 14 38 38 H 1.09002 * 110.31878 * 93.62265 * 17 16 14 39 39 H 1.07996 * 120.02533 * 0.02562 * 20 19 18 40 40 H 1.07991 * 119.97488 * 180.23083 * 21 20 19 41 41 H 1.08002 * 119.98097 * 179.97438 * 24 22 21 42 42 H 1.08000 * 120.02054 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6077 1.9807 -0.8436 5 6 3.5423 1.4441 -0.1198 6 1 4.1455 1.8894 0.6576 7 6 4.1467 0.8770 -1.2217 8 7 3.4121 0.3351 -2.1685 9 14 6.0087 0.8797 -1.3704 10 1 6.5981 0.1468 -0.2212 11 1 6.4050 0.2149 -2.6378 12 1 6.5033 2.2799 -1.3708 13 7 1.6481 2.1004 1.2535 14 6 1.5045 3.5501 1.0646 15 1 2.2902 3.9284 0.4106 16 6 1.5335 4.2791 2.4279 17 6 0.0288 4.3825 2.7619 18 7 -0.6630 4.3463 1.4680 19 6 -1.9897 4.7480 1.2699 20 6 -2.5854 4.5900 0.0257 21 6 -3.8956 4.9824 -0.1664 22 6 -4.6117 5.5428 0.8780 23 9 -5.8914 5.9312 0.6865 24 6 -4.0178 5.7060 2.1181 25 6 -2.7093 5.3106 2.3156 26 6 0.1407 3.8777 0.4977 27 8 -0.1808 3.7383 -0.6635 28 1 -0.3634 -1.0240 0.0864 29 1 -0.3633 0.5869 0.8437 30 1 -0.3634 0.4372 -0.9300 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8374 -0.0635 -2.9438 34 1 2.3058 1.8952 1.9906 35 1 2.0593 3.6862 3.1762 36 1 1.9806 5.2685 2.3317 37 1 -0.1800 5.3211 3.2752 38 1 -0.2808 3.5389 3.3788 39 1 -2.0259 4.1566 -0.7902 40 1 -4.3605 4.8563 -1.1329 41 1 -4.5778 6.1437 2.9313 42 1 -2.2462 5.4385 3.2829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517392229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:06 Heat of formation + Delta-G solvation = -47.090514 kcal Electronic energy + Delta-G solvation = -25400.347627 eV Core-core repulsion = 21680.725833 eV Total energy + Delta-G solvation = -3719.621794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.85079 -40.95116 -38.51619 -36.49054 -35.84375 -33.20628 -31.65539 -31.21506 -30.27166 -28.40097 -27.04796 -25.44529 -23.42043 -23.07973 -22.57256 -21.12642 -19.65071 -19.41517 -17.78796 -17.35918 -16.66348 -16.51749 -16.06384 -15.55986 -15.13855 -14.78051 -14.53418 -14.26014 -13.90554 -13.79304 -13.57930 -13.35975 -13.16967 -12.85753 -12.77854 -12.60871 -12.35861 -12.11400 -11.63186 -11.41486 -11.28329 -11.15398 -10.98021 -10.88627 -10.71744 -10.23182 -10.04339 -9.65179 -9.53391 -9.30832 -9.20007 -9.11807 -8.38791 -7.80440 -7.51776 -6.02706 -4.16431 1.06596 1.16830 2.78429 2.88496 3.25516 3.31895 3.32465 3.65454 4.27284 4.35816 4.41379 4.52004 4.75422 4.79545 4.86571 4.96956 5.16304 5.23589 5.28940 5.36259 5.50433 5.58812 5.81513 5.88200 5.91556 6.03885 6.06246 6.19175 6.29181 6.40373 6.51767 6.53102 6.71378 7.01432 7.10803 7.14025 7.18547 7.35108 7.53813 7.72927 7.93531 8.05272 8.21701 8.34715 8.51511 8.93421 9.51037 10.98417 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.003522 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.558047 B = 7948.460411 C = 8401.956006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.210 3.790 4 H 0.047 0.953 5 C -0.552 4.552 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.064 3.936 15 H 0.087 0.913 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.561 5.561 19 C 0.173 3.827 20 C -0.133 4.133 21 C -0.120 4.120 22 C 0.058 3.942 23 F -0.146 7.146 24 C -0.125 4.125 25 C -0.139 4.139 26 C 0.536 3.464 27 O -0.496 6.496 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.339 0.661 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.167 0.833 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 9.982 11.133 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.142 4.142 3 C 0.103 3.897 4 H 0.065 0.935 5 C -0.591 4.591 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.517 5.517 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.302 5.302 14 C -0.050 4.050 15 H 0.105 0.895 16 C -0.172 4.172 17 C -0.016 4.016 18 N -0.284 5.284 19 C 0.077 3.923 20 C -0.153 4.153 21 C -0.140 4.140 22 C 0.037 3.963 23 F -0.125 7.125 24 C -0.144 4.144 25 C -0.160 4.160 26 C 0.324 3.676 27 O -0.368 6.368 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.184 0.816 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.664 9.669 10.196 17.640 hybrid contribution 1.706 0.273 -0.154 1.734 sum -8.959 9.942 10.042 16.731 Atomic orbital electron populations 1.21695 0.99023 0.98305 1.00390 1.21473 0.92030 0.98989 1.01662 1.19324 0.93069 0.91497 0.85856 0.93547 1.21747 0.92358 1.39059 1.05913 0.92813 1.24925 0.97958 0.94906 0.95614 1.69877 1.34979 1.37562 1.09281 0.86700 0.85930 0.78168 0.77409 1.20286 1.21221 1.20393 1.60813 1.54394 1.03250 1.11781 1.22009 0.93697 0.93269 0.96033 0.89508 1.22807 0.94728 1.01737 0.97909 1.22156 0.92513 1.02562 0.84393 1.45947 1.09558 1.61478 1.11466 1.17897 0.83755 0.96149 0.94451 1.21642 0.94682 1.01112 0.97888 1.21068 0.94472 0.99593 0.98833 1.17644 0.79860 1.03537 0.95226 1.91464 1.35883 1.89273 1.95861 1.20837 0.95322 1.02145 0.96097 1.20586 0.94154 1.02559 0.98747 1.21316 0.87337 0.74358 0.84564 1.90593 1.78019 1.50783 1.17356 0.95674 0.93687 0.94345 0.89044 0.95156 0.92716 0.84176 0.88432 0.89845 0.90321 0.89928 0.81630 0.84519 0.84673 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.86 37.16 0.37 -2.57 16 2 C -0.10 -2.46 5.45 -26.73 -0.15 -2.60 16 3 C 0.21 5.04 1.82 -68.87 -0.13 4.91 16 4 H 0.05 1.30 6.96 -51.93 -0.36 0.94 16 5 C -0.55 -14.24 8.42 -34.44 -0.29 -14.53 16 6 H 0.05 1.33 7.70 -52.48 -0.40 0.93 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.67 -12.70 5.44 -100.97 -0.55 -13.25 16 14 C 0.06 1.07 3.05 -67.72 -0.21 0.87 16 15 H 0.09 1.66 7.86 -51.93 -0.41 1.25 16 16 C -0.13 -1.48 6.85 -25.10 -0.17 -1.65 16 17 C 0.11 1.10 6.48 -3.12 -0.02 1.08 16 18 N -0.56 -8.04 3.14 -112.25 -0.35 -8.39 16 19 C 0.17 2.41 6.60 -83.66 -0.55 1.86 16 20 C -0.13 -1.99 9.29 -39.40 -0.37 -2.36 16 21 C -0.12 -1.56 10.02 -39.54 -0.40 -1.96 16 22 C 0.06 0.71 7.30 -39.41 -0.29 0.42 16 23 F -0.15 -1.84 17.26 2.25 0.04 -1.80 16 24 C -0.12 -1.33 10.02 -39.54 -0.40 -1.73 16 25 C -0.14 -1.53 9.41 -39.40 -0.37 -1.90 16 26 C 0.54 9.68 7.34 -10.86 -0.08 9.60 16 27 O -0.50 -10.75 14.07 5.54 0.08 -10.67 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.93 7.62 -51.93 -0.40 0.54 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 2.45 5.96 -51.93 -0.31 2.14 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.34 5.99 7.83 -39.29 -0.31 5.68 16 35 H 0.10 0.93 7.66 -51.93 -0.40 0.54 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.59 7.27 -51.93 -0.38 0.21 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.17 2.89 5.23 -52.49 -0.27 2.61 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.13 1.09 6.76 -52.49 -0.35 0.74 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -29.97 345.25 -8.80 -38.77 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.68 Total: 7.48 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.14 Total: -8.80 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.28 Total: -45.78 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.97 -8.80 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517392229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.317 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds