Wall clock time and date at job start Tue Mar 31 2020 09:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00486 * 2 1 4 4 N 1.46499 * 109.47221 * 124.99862 * 3 2 1 5 5 C 1.46500 * 120.00048 * 269.99727 * 4 3 2 6 6 C 1.50701 * 109.47534 * 270.00194 * 5 4 3 7 7 H 1.07997 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99912 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99643 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00217 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47441 * 89.99957 * 10 8 6 12 12 H 1.48503 * 109.47252 * 209.99981 * 10 8 6 13 13 H 1.48506 * 109.47192 * 329.99525 * 10 8 6 14 14 C 1.34778 * 119.99913 * 90.00501 * 4 3 2 15 15 O 1.21590 * 120.00117 * 179.97438 * 14 4 3 16 16 N 1.34775 * 120.00141 * 359.97438 * 14 4 3 17 17 C 1.46503 * 120.00092 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.46972 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47204 * 179.97438 * 18 17 16 20 20 C 1.38250 * 119.97575 * 270.32991 * 19 18 17 21 21 C 1.38194 * 120.02377 * 180.27953 * 20 19 18 22 22 C 1.38460 * 119.97497 * 359.41202 * 21 20 19 23 23 F 1.35105 * 120.02800 * 180.30394 * 22 21 20 24 24 C 1.38467 * 119.94896 * 0.28520 * 22 21 20 25 25 C 1.38197 * 119.97188 * 359.97438 * 24 22 21 26 26 H 1.07991 * 120.00634 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99613 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47063 * 4.99936 * 3 2 1 30 30 H 1.09001 * 109.47326 * 245.00209 * 3 2 1 31 31 H 1.08995 * 109.46980 * 30.00570 * 5 4 3 32 32 H 1.09004 * 109.47242 * 149.99905 * 5 4 3 33 33 H 0.97006 * 119.99456 * 179.97438 * 9 8 6 34 34 H 0.96999 * 119.99695 * 359.97438 * 16 14 4 35 35 H 1.09000 * 109.46902 * 59.99873 * 17 16 14 36 36 H 1.08995 * 109.46871 * 300.00027 * 17 16 14 37 37 H 1.09007 * 109.46864 * 60.00080 * 18 17 16 38 38 H 1.08994 * 109.47451 * 300.00424 * 18 17 16 39 39 H 1.07998 * 119.98560 * 359.97438 * 20 19 18 40 40 H 1.08002 * 120.01531 * 179.69754 * 21 20 19 41 41 H 1.07998 * 120.01314 * 180.02562 * 24 22 21 42 42 H 1.07994 * 119.98607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8444 3.3436 2.4804 7 1 3.3035 3.8370 1.6365 8 6 2.5186 4.0667 3.6082 9 7 2.7682 5.3570 3.6568 10 14 1.7240 3.2134 5.0675 11 1 2.7799 2.7232 5.9895 12 1 0.8471 4.1734 5.7850 13 1 0.9131 2.0653 4.5884 14 6 4.2497 0.8660 0.9824 15 8 5.0220 0.8886 1.9213 16 7 4.6497 0.3752 -0.2074 17 6 6.0147 -0.1316 -0.3693 18 6 6.2080 -0.6271 -1.8038 19 6 7.6123 -1.1478 -1.9705 20 6 8.6233 -0.2929 -2.3683 21 6 9.9103 -0.7706 -2.5270 22 6 10.1895 -2.1033 -2.2759 23 9 11.4485 -2.5701 -2.4249 24 6 9.1773 -2.9573 -1.8715 25 6 7.8899 -2.4785 -1.7186 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 1.4889 1.6966 2.5459 32 1 3.0990 1.3602 3.2260 33 1 2.5386 5.8658 4.4501 34 1 4.0335 0.3568 -0.9563 35 1 6.1811 -0.9554 0.3248 36 1 6.7260 0.6678 -0.1616 37 1 6.0414 0.1965 -2.4982 38 1 5.4967 -1.4265 -2.0111 39 1 8.4063 0.7476 -2.5597 40 1 10.6991 -0.1037 -2.8425 41 1 9.3939 -3.9969 -1.6750 42 1 7.1004 -3.1442 -1.4029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577686073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:49 Heat of formation + Delta-G solvation = -25.651538 kcal Electronic energy + Delta-G solvation = -23960.500722 eV Core-core repulsion = 20241.808592 eV Total energy + Delta-G solvation = -3718.692130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.13558 -39.76977 -39.27887 -35.98327 -35.14341 -33.16967 -32.47758 -31.94098 -31.43158 -28.77150 -27.52534 -25.53439 -23.77024 -23.35664 -22.04675 -21.34590 -20.09655 -19.25994 -17.92907 -17.35613 -16.86699 -16.70758 -16.29001 -15.82468 -15.63591 -15.20337 -14.77575 -14.38703 -14.26266 -14.13135 -13.84977 -13.77201 -13.47848 -13.09873 -12.92284 -12.75866 -12.32882 -11.92364 -11.82237 -11.71692 -11.60499 -11.51603 -11.24213 -11.10616 -10.90760 -10.48933 -10.12399 -9.55906 -9.40656 -9.33596 -9.28125 -8.82858 -8.70557 -8.54922 -7.65410 -6.05075 -4.02999 0.82569 0.93871 2.33236 3.18852 3.32083 3.37106 3.39910 3.42847 3.92429 3.99001 4.39028 4.39806 4.43373 4.58722 4.68685 4.83896 4.94277 4.99142 5.13550 5.20217 5.27997 5.31152 5.38563 5.51335 5.59517 5.75358 5.82421 5.85715 5.90796 5.93036 6.00476 6.10968 6.26436 6.58799 6.60519 6.69678 6.83325 6.84745 6.95249 7.34148 7.58493 7.69944 8.52388 8.61631 8.98629 9.30803 9.56389 11.08495 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.002770 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.486282 B =10105.305145 C =11011.786240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 C 0.139 3.861 4 N -0.604 5.604 5 C 0.233 3.767 6 C -0.526 4.526 7 H 0.074 0.926 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.703 3.297 15 O -0.584 6.584 16 N -0.758 5.758 17 C 0.145 3.855 18 C -0.091 4.091 19 C -0.086 4.086 20 C -0.083 4.083 21 C -0.151 4.151 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.153 4.153 25 C -0.084 4.084 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.391 0.609 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 -16.104 -16.150 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.015 3.985 4 N -0.339 5.339 5 C 0.112 3.888 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.405 3.595 15 O -0.461 6.461 16 N -0.417 5.417 17 C 0.021 3.979 18 C -0.129 4.129 19 C -0.087 4.087 20 C -0.101 4.101 21 C -0.170 4.170 22 C 0.073 3.927 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.103 4.103 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.274 -15.911 -15.286 22.938 hybrid contribution -0.415 -0.394 0.422 0.711 sum 5.859 -16.305 -14.864 22.828 Atomic orbital electron populations 1.23837 0.95859 1.01816 1.00533 1.23494 0.96458 0.99123 0.99926 1.20497 0.93139 0.95390 0.89460 1.47151 1.09471 1.63949 1.13304 1.19544 0.94569 0.94868 0.79859 1.21374 1.40814 0.91297 1.03014 0.90804 1.24845 0.95379 0.94722 0.98111 1.69904 1.47997 1.06627 1.29269 0.86863 0.79854 0.79643 0.83405 1.19918 1.21145 1.19027 1.15870 0.82628 0.78338 0.82706 1.90897 1.53051 1.62462 1.39675 1.45255 1.14360 1.69394 1.12691 1.21025 0.83436 0.98956 0.94528 1.20798 0.92996 1.01689 0.97427 1.19780 0.95576 0.93665 0.99697 1.20998 0.91436 1.00093 0.97592 1.21163 0.98421 0.94050 1.03391 1.17759 0.79473 0.93098 1.02417 1.91498 1.38035 1.89134 1.93446 1.21144 0.92736 1.00366 1.02888 1.20959 0.96008 0.95245 0.98041 0.88785 0.88204 0.87754 0.89133 0.91178 0.95264 0.94581 0.92636 0.77405 0.91833 0.91616 0.89992 0.90115 0.84682 0.84683 0.84757 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.21 9.85 -36.03 -0.35 -2.56 16 3 C 0.14 2.14 5.61 -5.20 -0.03 2.11 16 4 N -0.60 -12.42 2.44 -182.19 -0.44 -12.87 16 5 C 0.23 5.75 4.23 -5.19 -0.02 5.73 16 6 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 7 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 10 Si 0.88 21.77 27.47 -169.99 -4.67 17.11 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 14 C 0.70 14.56 8.28 -86.92 -0.72 13.84 16 15 O -0.58 -14.92 15.92 5.29 0.08 -14.84 16 16 N -0.76 -11.08 5.42 -65.23 -0.35 -11.43 16 17 C 0.15 1.82 5.66 -4.04 -0.02 1.80 16 18 C -0.09 -0.76 5.46 -27.88 -0.15 -0.91 16 19 C -0.09 -0.75 5.13 -104.62 -0.54 -1.29 16 20 C -0.08 -0.72 9.70 -39.59 -0.38 -1.10 16 21 C -0.15 -1.35 10.03 -39.52 -0.40 -1.75 16 22 C 0.09 0.90 7.30 -39.42 -0.29 0.61 16 23 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 24 C -0.15 -1.32 10.03 -39.51 -0.40 -1.72 16 25 C -0.08 -0.70 9.70 -39.59 -0.38 -1.08 16 26 H 0.09 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 28 H 0.10 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 30 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.39 4.50 6.20 -40.82 -0.25 4.24 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -35.44 363.20 -8.74 -44.18 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.93 Total: 2.59 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.71 Total: -1.61 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.02 Total: -51.43 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.44 -8.74 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577686073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.527 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds