Wall clock time and date at job start Tue Mar 31 2020 09:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00486 * 2 1 4 4 N 1.46499 * 109.47221 * 124.99862 * 3 2 1 5 5 C 1.46500 * 120.00048 * 269.99727 * 4 3 2 6 6 C 1.50701 * 109.47534 * 270.00194 * 5 4 3 7 7 H 1.07997 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99912 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99643 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00217 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47441 * 89.99957 * 10 8 6 12 12 H 1.48503 * 109.47252 * 209.99981 * 10 8 6 13 13 H 1.48506 * 109.47192 * 329.99525 * 10 8 6 14 14 C 1.34778 * 119.99913 * 90.00501 * 4 3 2 15 15 O 1.21590 * 120.00117 * 179.97438 * 14 4 3 16 16 N 1.34775 * 120.00141 * 359.97438 * 14 4 3 17 17 C 1.46503 * 120.00092 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.46972 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47204 * 179.97438 * 18 17 16 20 20 C 1.38250 * 119.97575 * 270.32991 * 19 18 17 21 21 C 1.38194 * 120.02377 * 180.27953 * 20 19 18 22 22 C 1.38460 * 119.97497 * 359.41202 * 21 20 19 23 23 F 1.35105 * 120.02800 * 180.30394 * 22 21 20 24 24 C 1.38467 * 119.94896 * 0.28520 * 22 21 20 25 25 C 1.38197 * 119.97188 * 359.97438 * 24 22 21 26 26 H 1.07991 * 120.00634 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99613 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47063 * 4.99936 * 3 2 1 30 30 H 1.09001 * 109.47326 * 245.00209 * 3 2 1 31 31 H 1.08995 * 109.46980 * 30.00570 * 5 4 3 32 32 H 1.09004 * 109.47242 * 149.99905 * 5 4 3 33 33 H 0.97006 * 119.99456 * 179.97438 * 9 8 6 34 34 H 0.96999 * 119.99695 * 359.97438 * 16 14 4 35 35 H 1.09000 * 109.46902 * 59.99873 * 17 16 14 36 36 H 1.08995 * 109.46871 * 300.00027 * 17 16 14 37 37 H 1.09007 * 109.46864 * 60.00080 * 18 17 16 38 38 H 1.08994 * 109.47451 * 300.00424 * 18 17 16 39 39 H 1.07998 * 119.98560 * 359.97438 * 20 19 18 40 40 H 1.08002 * 120.01531 * 179.69754 * 21 20 19 41 41 H 1.07998 * 120.01314 * 180.02562 * 24 22 21 42 42 H 1.07994 * 119.98607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8444 3.3436 2.4804 7 1 3.3035 3.8370 1.6365 8 6 2.5186 4.0667 3.6082 9 7 2.7682 5.3570 3.6568 10 14 1.7240 3.2134 5.0675 11 1 2.7799 2.7232 5.9895 12 1 0.8471 4.1734 5.7850 13 1 0.9131 2.0653 4.5884 14 6 4.2497 0.8660 0.9824 15 8 5.0220 0.8886 1.9213 16 7 4.6497 0.3752 -0.2074 17 6 6.0147 -0.1316 -0.3693 18 6 6.2080 -0.6271 -1.8038 19 6 7.6123 -1.1478 -1.9705 20 6 8.6233 -0.2929 -2.3683 21 6 9.9103 -0.7706 -2.5270 22 6 10.1895 -2.1033 -2.2759 23 9 11.4485 -2.5701 -2.4249 24 6 9.1773 -2.9573 -1.8715 25 6 7.8899 -2.4785 -1.7186 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 1.4889 1.6966 2.5459 32 1 3.0990 1.3602 3.2260 33 1 2.5386 5.8658 4.4501 34 1 4.0335 0.3568 -0.9563 35 1 6.1811 -0.9554 0.3248 36 1 6.7260 0.6678 -0.1616 37 1 6.0414 0.1965 -2.4982 38 1 5.4967 -1.4265 -2.0111 39 1 8.4063 0.7476 -2.5597 40 1 10.6991 -0.1037 -2.8425 41 1 9.3939 -3.9969 -1.6750 42 1 7.1004 -3.1442 -1.4029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577686073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:49 Heat of formation + Delta-G solvation = -47.702259 kcal Electronic energy + Delta-G solvation = -23961.456913 eV Core-core repulsion = 20241.808592 eV Total energy + Delta-G solvation = -3719.648321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89857 -41.14232 -40.12528 -37.37154 -36.42472 -34.99374 -33.76648 -33.30940 -32.07391 -30.34504 -28.73685 -26.88084 -25.03197 -24.00556 -23.68004 -22.14246 -21.30170 -20.58876 -19.09851 -18.78959 -18.59604 -17.65232 -17.44257 -16.64479 -16.58435 -16.48958 -16.09491 -15.79736 -15.48806 -15.20542 -14.95668 -14.81251 -14.47833 -14.40089 -14.19313 -14.00102 -13.65975 -13.45347 -13.13176 -12.91400 -12.60214 -12.52202 -12.48742 -12.35471 -12.22020 -11.92329 -11.83662 -11.71234 -11.09135 -10.80425 -10.31013 -10.13946 -10.03796 -9.54109 -9.27928 -8.31381 -6.35567 0.12507 0.29362 1.30011 1.35739 1.38748 1.47104 1.95968 2.32981 2.33550 2.61014 3.03056 3.16393 3.31108 3.77266 3.86886 3.99859 4.07589 4.11160 4.14968 4.24230 4.36229 4.41113 4.46856 4.61885 4.75263 4.87363 4.90129 4.91443 5.03052 5.05085 5.10173 5.15392 5.18005 5.27996 5.49003 5.54962 5.59118 5.60200 5.74315 5.93721 5.94473 6.09849 6.32719 6.65582 7.17210 7.26568 7.75057 8.85739 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.002770 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.486282 B =10105.305145 C =11011.786240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.182 4.182 3 C 0.135 3.865 4 N -0.612 5.612 5 C 0.244 3.756 6 C -0.533 4.533 7 H 0.028 0.972 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.946 3.054 11 H -0.278 1.278 12 H -0.275 1.275 13 H -0.237 1.237 14 C 0.695 3.305 15 O -0.642 6.642 16 N -0.733 5.733 17 C 0.145 3.855 18 C -0.076 4.076 19 C -0.094 4.094 20 C -0.090 4.090 21 C -0.160 4.160 22 C 0.071 3.929 23 F -0.152 7.152 24 C -0.158 4.158 25 C -0.086 4.086 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.410 0.590 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 -18.380 -17.101 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.012 3.988 4 N -0.346 5.346 5 C 0.121 3.879 6 C -0.571 4.571 7 H 0.047 0.953 8 C -0.187 4.187 9 N -0.587 5.587 10 Si 0.769 3.231 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.160 1.160 14 C 0.396 3.604 15 O -0.523 6.523 16 N -0.392 5.392 17 C 0.020 3.980 18 C -0.113 4.113 19 C -0.095 4.095 20 C -0.108 4.108 21 C -0.178 4.178 22 C 0.052 3.948 23 F -0.131 7.131 24 C -0.176 4.176 25 C -0.104 4.104 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.391 -18.217 -16.338 24.861 hybrid contribution 0.205 0.366 0.616 0.745 sum 4.596 -17.851 -15.722 24.227 Atomic orbital electron populations 1.24068 0.95494 1.02946 0.98017 1.23303 0.96748 0.97981 1.02100 1.20748 0.92649 0.96722 0.88633 1.47106 1.10489 1.63580 1.13383 1.19158 0.95139 0.91802 0.81778 1.21600 1.40196 0.93606 1.01744 0.95349 1.25829 0.96056 0.95356 1.01487 1.70056 1.49612 1.08513 1.30522 0.85738 0.79046 0.79401 0.78907 1.20344 1.19977 1.16035 1.16170 0.82183 0.78374 0.83645 1.90849 1.54623 1.64812 1.42058 1.45021 1.15444 1.67599 1.11131 1.21143 0.81546 0.97831 0.97445 1.20697 0.93364 1.02898 0.94333 1.19900 0.95713 0.93986 0.99868 1.21221 0.91371 1.00805 0.97441 1.21355 0.99030 0.94081 1.03378 1.18052 0.79473 0.93810 1.03473 1.91470 1.38678 1.89273 1.93648 1.21384 0.92707 1.01085 1.02436 1.21235 0.96347 0.95453 0.97317 0.86433 0.88302 0.86568 0.90364 0.88484 0.93365 0.96584 0.92338 0.75193 0.92698 0.93891 0.88499 0.87648 0.83532 0.83670 0.83280 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 14.32 67.78 0.97 -2.37 16 2 C -0.18 -4.15 9.85 25.65 0.25 -3.90 16 3 C 0.13 3.91 5.61 85.63 0.48 4.39 16 4 N -0.61 -24.91 2.44 -848.57 -2.07 -26.98 16 5 C 0.24 12.06 4.23 85.63 0.36 12.42 16 6 C -0.53 -31.66 9.94 25.60 0.25 -31.40 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 8 C 0.01 0.62 5.47 84.65 0.46 1.08 16 9 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 10 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 14 C 0.70 28.79 8.28 179.05 1.48 30.27 16 15 O -0.64 -33.72 15.92 -4.00 -0.06 -33.78 16 16 N -0.73 -20.39 5.42 -478.53 -2.59 -22.99 16 17 C 0.14 3.47 5.66 86.38 0.49 3.96 16 18 C -0.08 -1.04 5.46 29.85 0.16 -0.88 16 19 C -0.09 -1.45 5.13 -19.86 -0.10 -1.56 16 20 C -0.09 -1.46 9.70 22.26 0.22 -1.24 16 21 C -0.16 -2.76 10.03 22.31 0.22 -2.54 16 22 C 0.07 1.35 7.30 22.38 0.16 1.51 16 23 F -0.15 -3.21 17.27 44.97 0.78 -2.44 16 24 C -0.16 -2.53 10.03 22.31 0.22 -2.31 16 25 C -0.09 -1.24 9.70 22.26 0.22 -1.02 16 26 H 0.12 1.83 8.06 -2.92 -0.02 1.81 16 27 H 0.10 2.00 7.84 -2.91 -0.02 1.97 16 28 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.08 2.46 7.72 -2.39 -0.02 2.44 16 30 H 0.10 2.21 6.36 -2.39 -0.02 2.19 16 31 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 32 H 0.02 0.86 6.85 -2.38 -0.02 0.84 16 33 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 34 H 0.41 8.28 6.20 -92.71 -0.58 7.71 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.10 8.09 -2.38 -0.02 1.08 16 38 H 0.11 1.00 8.09 -2.39 -0.02 0.98 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -80.86 363.20 4.48 -76.38 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.39 Total: 16.66 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.86 Total: 6.43 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -4.37 Total: -110.03 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.06 Total: -33.78 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -80.86 4.48 -76.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577686073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.676 kcal (2) G-P(sol) polarization free energy of solvation -80.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds