Wall clock time and date at job start Tue Mar 31 2020 09:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46991 * 2 1 4 4 H 1.09003 * 109.46859 * 305.70122 * 3 2 1 5 5 C 1.50698 * 109.46843 * 185.69879 * 3 2 1 6 6 H 1.07996 * 119.99862 * 244.31250 * 5 3 2 7 7 C 1.37872 * 120.00305 * 64.31708 * 5 3 2 8 8 N 1.31516 * 119.99736 * 7.63484 * 7 5 3 9 9 Si 1.86793 * 120.00389 * 187.63721 * 7 5 3 10 10 H 1.48502 * 109.46979 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47008 * 240.00227 * 9 7 5 12 12 H 1.48497 * 109.47434 * 119.99805 * 9 7 5 13 13 N 1.46897 * 109.46601 * 65.69835 * 3 2 1 14 14 C 1.46905 * 110.99836 * 205.83971 * 13 3 2 15 15 H 1.09003 * 110.43528 * 323.02832 * 14 13 3 16 16 C 1.54627 * 110.48571 * 200.34572 * 14 13 3 17 17 C 1.54484 * 101.76390 * 266.11812 * 16 14 13 18 18 N 1.46768 * 105.47114 * 334.58643 * 17 16 14 19 19 C 1.40042 * 124.34673 * 196.99018 * 18 17 16 20 20 C 1.38808 * 120.08089 * 270.00399 * 19 18 17 21 21 C 1.38141 * 119.95430 * 179.97438 * 20 19 18 22 22 C 1.38283 * 120.11516 * 0.02562 * 21 20 19 23 23 C 1.38264 * 120.15519 * 359.97438 * 22 21 20 24 24 C 1.38319 * 120.04240 * 359.74242 * 23 22 21 25 25 F 1.35098 * 120.05437 * 180.27754 * 24 23 22 26 26 C 1.34422 * 111.30226 * 17.01727 * 18 17 16 27 27 O 1.21290 * 124.93691 * 179.62943 * 26 18 17 28 28 H 1.08999 * 109.46798 * 180.63281 * 1 2 3 29 29 H 1.09001 * 109.47026 * 300.62388 * 1 2 3 30 30 H 1.08996 * 109.47615 * 60.63048 * 1 2 3 31 31 H 1.09002 * 109.47055 * 240.00652 * 2 1 3 32 32 H 1.08993 * 109.47252 * 120.00078 * 2 1 3 33 33 H 0.96999 * 120.00137 * 2.53405 * 8 7 5 34 34 H 1.00898 * 111.00350 * 329.79702 * 13 3 2 35 35 H 1.08994 * 110.97405 * 24.23469 * 16 14 13 36 36 H 1.09004 * 110.96978 * 148.00489 * 16 14 13 37 37 H 1.09000 * 110.24747 * 215.58889 * 17 16 14 38 38 H 1.08996 * 110.24275 * 93.58283 * 17 16 14 39 39 H 1.07995 * 120.02369 * 359.95078 * 20 19 18 40 40 H 1.08003 * 119.94837 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.92284 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.97721 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5957 1.9850 -0.8346 5 6 3.5404 1.4449 -0.1411 6 1 4.1575 1.8230 0.6605 7 6 4.1252 0.9644 -1.2935 8 7 3.3769 0.6445 -2.3266 9 14 5.9804 0.7676 -1.3874 10 1 6.5891 1.1943 -0.1019 11 1 6.5121 1.6088 -2.4897 12 1 6.3147 -0.6560 -1.6455 13 7 1.6658 2.0941 1.2623 14 6 1.5655 3.5500 1.0937 15 1 2.3347 3.9077 0.4092 16 6 1.6804 4.2623 2.4614 17 6 0.1965 4.4146 2.8628 18 7 -0.5523 4.4171 1.6005 19 6 -1.8716 4.8671 1.4652 20 6 -2.9288 3.9837 1.6344 21 6 -4.2291 4.4305 1.5009 22 6 -4.4795 5.7565 1.1985 23 6 -3.4299 6.6404 1.0291 24 6 -2.1256 6.2012 1.1670 25 9 -1.1000 7.0660 1.0070 26 6 0.1906 3.9313 0.5910 27 8 -0.1864 3.8163 -0.5560 28 1 -0.3633 -1.0276 0.0114 29 1 -0.3633 0.5235 0.8844 30 1 -0.3634 0.5040 -0.8955 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.4172 0.7811 -2.2911 34 1 0.8054 1.7120 1.6253 35 1 2.2172 3.6430 3.1799 36 1 2.1576 5.2365 2.3549 37 1 0.0438 5.3543 3.3937 38 1 -0.1143 3.5747 3.4840 39 1 -2.7350 2.9477 1.8698 40 1 -5.0517 3.7430 1.6321 41 1 -5.4974 6.1024 1.0944 42 1 -3.6288 7.6754 0.7934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583389136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:11 Heat of formation + Delta-G solvation = -68.939076 kcal Electronic energy + Delta-G solvation = -25844.194920 eV Core-core repulsion = 22123.625702 eV Total energy + Delta-G solvation = -3720.569218 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.06004 -42.07407 -39.81068 -38.20491 -37.58659 -34.95006 -33.63551 -32.00242 -31.60914 -29.77020 -28.47413 -27.01416 -24.89984 -24.41411 -23.78251 -22.51446 -21.81525 -21.06308 -19.03752 -18.84058 -18.26235 -17.86900 -17.38423 -17.08304 -16.72611 -16.11847 -15.93535 -15.67730 -15.51610 -15.21727 -15.04078 -14.79304 -14.50366 -14.43166 -14.21760 -13.92746 -13.54284 -13.37532 -13.26757 -12.99492 -12.65633 -12.54532 -12.46288 -12.40780 -12.20421 -11.89686 -11.85560 -11.68223 -11.55447 -10.67990 -10.48250 -10.14561 -10.10166 -9.81477 -9.23749 -8.53541 -6.26113 -0.06657 0.08665 1.22022 1.54358 1.63451 1.72011 1.80156 2.44404 2.59737 3.09932 3.20284 3.23853 3.35865 3.64903 3.69642 3.93687 3.95917 4.11144 4.19835 4.23263 4.25359 4.28214 4.37501 4.40495 4.54456 4.63880 4.81250 4.91849 4.94287 4.99154 5.03516 5.04734 5.08065 5.18114 5.28334 5.29621 5.44865 5.46821 5.73241 5.84931 5.91652 6.08170 6.36935 6.51818 6.75943 6.93956 7.53131 8.79902 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.003989 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.026856 B = 7017.085414 C = 7438.094353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.205 3.795 4 H -0.037 1.037 5 C -0.586 4.586 6 H 0.053 0.947 7 C -0.035 4.035 8 N -0.939 5.939 9 Si 1.120 2.880 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.633 5.633 14 C 0.065 3.935 15 H 0.079 0.921 16 C -0.109 4.109 17 C 0.107 3.893 18 N -0.574 5.574 19 C 0.081 3.919 20 C -0.097 4.097 21 C -0.113 4.113 22 C -0.077 4.077 23 C -0.148 4.148 24 C 0.071 3.929 25 F -0.150 7.150 26 C 0.486 3.514 27 O -0.570 6.570 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.254 0.746 34 H 0.329 0.671 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.083 9.906 15.295 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.097 3.903 4 H -0.020 1.020 5 C -0.625 4.625 6 H 0.072 0.928 7 C -0.233 4.233 8 N -0.577 5.577 9 Si 0.943 3.057 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.265 5.265 14 C -0.049 4.049 15 H 0.097 0.903 16 C -0.147 4.147 17 C -0.013 4.013 18 N -0.306 5.306 19 C -0.009 4.009 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.094 4.094 23 C -0.167 4.167 24 C 0.050 3.950 25 F -0.129 7.129 26 C 0.274 3.726 27 O -0.447 6.447 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.186 0.814 41 H 0.195 0.805 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.397 9.406 13.968 22.155 hybrid contribution -1.652 0.743 -0.348 1.845 sum -16.049 10.149 13.619 23.368 Atomic orbital electron populations 1.21727 0.96051 1.01720 0.99988 1.21649 0.94501 0.98687 1.01034 1.19206 0.95266 0.90475 0.85395 1.01983 1.22271 0.92007 1.44513 1.03678 0.92818 1.27216 1.10662 0.93536 0.91851 1.70848 1.07047 1.47776 1.31995 0.82902 0.69625 0.77069 0.76150 1.19244 1.21440 1.20513 1.60937 1.36043 1.00006 1.29467 1.22340 0.91418 0.91436 0.99688 0.90288 1.22703 0.95826 1.01613 0.94588 1.22498 0.90413 1.04672 0.83744 1.45756 1.11079 1.62285 1.11436 1.17867 0.84784 0.91664 1.06622 1.21503 0.92344 0.99511 0.98294 1.21574 0.95985 0.97094 0.98511 1.21589 1.00311 0.92341 0.95200 1.21478 0.89407 1.03174 1.02653 1.18482 0.85856 0.86921 1.03720 1.91453 1.59075 1.69092 1.93253 1.22754 0.89920 0.75588 0.84386 1.90678 1.77897 1.55231 1.20851 0.91015 0.92544 0.95805 0.93954 0.92010 0.93573 0.85169 0.86112 0.88580 0.88029 0.88345 0.84603 0.81416 0.80535 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 9.76 71.98 0.70 -4.74 16 2 C -0.12 -5.75 5.20 30.60 0.16 -5.59 16 3 C 0.21 10.73 1.50 44.17 0.07 10.80 16 4 H -0.04 -2.32 6.57 -2.39 -0.02 -2.33 16 5 C -0.59 -33.62 8.50 25.60 0.22 -33.40 16 6 H 0.05 3.06 7.83 -2.91 -0.02 3.03 16 7 C -0.04 -2.06 5.18 84.65 0.44 -1.62 16 8 N -0.94 -59.57 12.85 21.45 0.28 -59.29 16 9 Si 1.12 51.96 29.91 68.60 2.05 54.01 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.63 -26.46 6.09 -473.33 -2.88 -29.34 16 14 C 0.07 2.56 3.03 44.91 0.14 2.69 16 15 H 0.08 3.70 7.76 -2.39 -0.02 3.68 16 16 C -0.11 -2.83 6.89 31.65 0.22 -2.61 16 17 C 0.11 2.37 7.28 86.83 0.63 3.00 16 18 N -0.57 -17.75 2.78 -627.46 -1.75 -19.50 16 19 C 0.08 2.29 5.39 38.16 0.21 2.50 16 20 C -0.10 -2.18 9.97 22.38 0.22 -1.95 16 21 C -0.11 -1.71 10.04 22.26 0.22 -1.49 16 22 C -0.08 -1.02 10.04 22.29 0.22 -0.80 16 23 C -0.15 -2.75 10.02 22.30 0.22 -2.53 16 24 C 0.07 1.91 7.31 22.48 0.16 2.07 16 25 F -0.15 -4.66 17.08 44.97 0.77 -3.89 16 26 C 0.49 19.96 7.21 87.90 0.63 20.59 16 27 O -0.57 -29.48 17.15 -3.06 -0.05 -29.54 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 1.97 6.45 -2.39 -0.02 1.96 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.04 2.30 6.24 -2.39 -0.01 2.28 16 32 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.25 16.70 6.14 -92.71 -0.57 16.13 16 34 H 0.33 12.35 6.28 -89.70 -0.56 11.79 16 35 H 0.12 2.79 8.08 -2.39 -0.02 2.77 16 36 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -80.70 350.91 3.56 -77.14 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.67 Total: 23.49 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.47 Total: -13.08 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -4.35 Total: -108.14 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.05 Total: 54.01 kcal Total: -80.70 3.56 -77.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583389136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.205 kcal (2) G-P(sol) polarization free energy of solvation -80.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds