Wall clock time and date at job start Tue Mar 31 2020 09:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47210 * 239.99502 * 2 1 3 5 5 H 1.07995 * 120.00413 * 239.99757 * 4 2 1 6 6 C 1.37886 * 119.99668 * 60.00351 * 4 2 1 7 7 N 1.31508 * 120.00168 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99739 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 89.99965 * 8 6 4 10 10 H 1.48503 * 109.47058 * 210.00173 * 8 6 4 11 11 H 1.48504 * 109.47554 * 329.99856 * 8 6 4 12 12 C 1.53001 * 109.46802 * 119.99862 * 2 1 3 13 13 N 1.46497 * 109.47185 * 300.00167 * 12 2 1 14 14 C 1.34776 * 119.99924 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00267 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00249 * 179.97438 * 14 13 12 17 17 C 1.47067 * 136.05152 * 359.62914 * 16 14 13 18 18 C 1.53497 * 87.98534 * 153.13820 * 17 16 14 19 19 O 1.42898 * 114.38988 * 139.66779 * 18 17 16 20 20 C 1.42898 * 114.00084 * 116.31163 * 19 18 17 21 21 C 1.53005 * 109.47065 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.47136 * 300.00158 * 21 20 19 23 23 F 1.39896 * 109.47090 * 60.00050 * 21 20 19 24 24 C 1.47066 * 136.06263 * 179.97438 * 16 14 13 25 25 H 1.08998 * 109.47762 * 300.00387 * 1 2 3 26 26 H 1.09000 * 109.47043 * 60.00574 * 1 2 3 27 27 H 1.09008 * 109.47351 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47400 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46819 * 300.00143 * 3 2 1 30 30 H 1.09005 * 109.46822 * 59.99491 * 3 2 1 31 31 H 0.97002 * 120.00482 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47247 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47089 * 60.00305 * 12 2 1 34 34 H 0.96995 * 119.99876 * 359.97438 * 13 12 2 35 35 H 1.09007 * 113.46858 * 267.91303 * 17 16 14 36 36 H 1.08993 * 113.47208 * 38.35639 * 17 16 14 37 37 H 1.09006 * 114.20377 * 272.47966 * 18 17 16 38 38 H 1.08991 * 109.47569 * 300.00262 * 20 19 18 39 39 H 1.09001 * 109.46902 * 60.00637 * 20 19 18 40 40 H 1.08997 * 109.47170 * 180.02562 * 21 20 19 41 41 H 1.09005 * 113.46156 * 321.64401 * 24 16 14 42 42 H 1.08994 * 113.46837 * 92.02042 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7119 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6695 15 8 2.5765 -1.4793 3.7812 16 7 1.4286 0.1448 4.7700 17 6 0.6001 1.3283 5.0453 18 6 0.2055 0.6752 6.3772 19 8 0.1412 1.5796 7.4817 20 6 -1.1645 1.7162 8.0458 21 6 -1.1146 2.7025 9.2145 22 9 -0.2326 2.2252 10.1901 23 9 -0.6724 3.9477 8.7552 24 6 1.5568 -0.0362 6.2238 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7082 1.1608 -3.4845 32 1 3.1299 -0.7217 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7582 2.3564 35 1 1.1782 2.2445 5.1657 36 1 -0.2349 1.4439 4.3544 37 1 -0.6579 0.0130 6.3118 38 1 -1.8517 2.0875 7.2857 39 1 -1.5088 0.7461 8.4042 40 1 -2.1105 2.8064 9.6451 41 1 1.5350 -1.0808 6.5347 42 1 2.3905 0.5153 6.6581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602329450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:21 Heat of formation + Delta-G solvation = -136.412234 kcal Electronic energy + Delta-G solvation = -25314.481255 eV Core-core repulsion = 21160.216957 eV Total energy + Delta-G solvation = -4154.264299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.26391 -47.30032 -40.57021 -38.70519 -36.97853 -36.11632 -33.24236 -31.08690 -30.50875 -28.52193 -26.26208 -25.73257 -25.48667 -24.58711 -23.42248 -22.08504 -19.56068 -18.81147 -18.45033 -17.83895 -17.78905 -17.17673 -16.76395 -16.12511 -15.77619 -15.21590 -15.06182 -14.83540 -14.23716 -14.14167 -13.97001 -13.65614 -13.46025 -13.36490 -12.95453 -12.83965 -12.79322 -12.66715 -12.19059 -11.94786 -11.54151 -11.38841 -11.36120 -11.19442 -10.87034 -10.69325 -10.39211 -10.21949 -10.02489 -9.82162 -9.63977 -9.32563 -8.81768 -8.79741 -8.41479 -8.19086 -6.02589 -4.12487 2.43641 2.99350 3.28340 3.35294 3.39755 3.41903 3.61845 3.74473 3.89943 4.09961 4.26103 4.41361 4.46361 4.52782 4.72553 4.94707 4.98061 5.21925 5.24308 5.34024 5.43803 5.55825 5.63952 6.22796 6.34989 6.50005 6.56717 6.78416 6.81843 6.92448 7.02153 7.07048 7.35142 7.49673 7.55115 7.69525 8.00253 8.11804 8.36556 8.40877 8.87130 8.98930 9.53260 10.98947 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.032304 B = 0.002440 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.546750 B =11474.285857 C =12016.196354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.728 5.728 14 C 0.734 3.266 15 O -0.591 6.591 16 N -0.667 5.667 17 C 0.084 3.916 18 C 0.049 3.951 19 O -0.356 6.356 20 C 0.007 3.993 21 C 0.271 3.729 22 F -0.200 7.200 23 F -0.199 7.199 24 C 0.128 3.872 25 H 0.004 0.996 26 H 0.085 0.915 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.394 0.606 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 4.927 21.588 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.027 3.973 13 N -0.381 5.381 14 C 0.437 3.563 15 O -0.470 6.470 16 N -0.410 5.410 17 C -0.040 4.040 18 C -0.010 4.010 19 O -0.274 6.274 20 C -0.071 4.071 21 C 0.217 3.783 22 F -0.181 7.181 23 F -0.180 7.180 24 C 0.004 3.996 25 H 0.023 0.977 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.918 4.288 21.339 23.161 hybrid contribution -0.072 -0.038 -0.966 0.969 sum -7.991 4.250 20.373 22.293 Atomic orbital electron populations 1.21821 0.97801 0.99151 0.99951 1.18363 0.92787 0.92800 0.90480 1.21823 0.98640 0.98332 0.99978 1.20984 1.31467 1.12099 0.89820 0.92361 1.24881 0.94877 0.94910 0.98860 1.69801 1.36734 1.22766 1.23224 0.86559 0.79345 0.79362 0.82534 1.20719 1.21272 1.19880 1.21642 0.97990 0.95453 0.82206 1.45460 1.55547 1.33000 1.04135 1.15268 0.79614 0.82239 0.79202 1.90901 1.42997 1.27843 1.85242 1.48226 1.56687 1.30770 1.05318 1.23431 0.94638 0.90945 0.94982 1.24050 0.99240 0.91885 0.85781 1.88007 1.27317 1.64371 1.47670 1.23786 0.87572 0.99923 0.95794 1.22027 0.91763 0.79017 0.85493 1.93020 1.72588 1.88226 1.64280 1.93024 1.91580 1.43924 1.89479 1.22880 0.96119 1.01351 0.79230 0.97683 0.89590 0.95426 0.95394 0.89589 0.97634 0.93010 0.92829 0.92847 0.77143 0.89101 0.90225 0.87449 0.89720 0.89817 0.85834 0.89880 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 13 N -0.73 -13.69 4.96 -65.23 -0.32 -14.01 16 14 C 0.73 13.91 8.79 -86.92 -0.76 13.15 16 15 O -0.59 -13.53 17.12 5.29 0.09 -13.44 16 16 N -0.67 -9.54 3.69 -191.06 -0.71 -10.24 16 17 C 0.08 0.87 8.14 -8.51 -0.07 0.80 16 18 C 0.05 0.42 4.66 -26.23 -0.12 0.30 16 19 O -0.36 -3.13 10.29 -35.23 -0.36 -3.49 16 20 C 0.01 0.04 6.00 37.16 0.22 0.26 16 21 C 0.27 1.51 5.63 37.16 0.21 1.72 16 22 F -0.20 -1.72 17.28 2.25 0.04 -1.68 16 23 F -0.20 -1.74 17.28 2.25 0.04 -1.71 16 24 C 0.13 1.45 8.46 -8.52 -0.07 1.37 16 25 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 30 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 6.73 5.88 -40.82 -0.24 6.49 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.11 0.73 7.88 -51.93 -0.41 0.32 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -32.24 352.06 -7.06 -39.31 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.18 Total: 2.41 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.46 Total: 4.90 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.51 Total: -47.35 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.27 Total: -16.93 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.24 -7.06 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602329450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.106 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds