Wall clock time and date at job start Tue Mar 31 2020 08:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47006 * 2 1 4 4 C 1.50698 * 109.46557 * 119.99304 * 2 1 3 5 5 N 1.28013 * 120.00632 * 0.02562 * 4 2 1 6 6 N 1.40091 * 120.00432 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00219 * 179.97438 * 6 5 4 8 8 O 1.21300 * 119.99769 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.38244 * 119.97486 * 269.72932 * 10 9 7 12 12 C 1.38202 * 120.02338 * 179.72838 * 11 10 9 13 13 C 1.38457 * 119.97200 * 0.56577 * 12 11 10 14 14 F 1.35099 * 120.02649 * 179.68648 * 13 12 11 15 15 C 1.38455 * 119.95159 * 359.70550 * 13 12 11 16 16 C 1.38200 * 119.97412 * 0.02562 * 15 13 12 17 17 C 1.52993 * 109.47403 * 239.99482 * 2 1 3 18 18 C 1.50698 * 109.47410 * 60.00344 * 17 2 1 19 19 H 1.08003 * 119.99408 * 359.97438 * 18 17 2 20 20 C 1.37869 * 120.00466 * 180.02562 * 18 17 2 21 21 N 1.31511 * 120.00589 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99987 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46774 * 89.99721 * 22 20 18 24 24 H 1.48489 * 109.47265 * 210.00152 * 22 20 18 25 25 H 1.48497 * 109.46777 * 330.00515 * 22 20 18 26 26 H 1.08999 * 109.47694 * 300.00677 * 1 2 3 27 27 H 1.09004 * 109.47003 * 60.00868 * 1 2 3 28 28 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47311 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47028 * 299.99427 * 3 2 1 31 31 H 1.09005 * 109.47780 * 59.99468 * 3 2 1 32 32 H 1.08009 * 120.00081 * 180.02562 * 4 2 1 33 33 H 0.97005 * 120.00319 * 359.97438 * 6 5 4 34 34 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 35 35 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 36 36 H 1.07996 * 119.98449 * 359.97438 * 11 10 9 37 37 H 1.07995 * 120.01101 * 180.25281 * 12 11 10 38 38 H 1.08001 * 120.01453 * 179.97438 * 15 13 12 39 39 H 1.08008 * 119.98737 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47142 * 180.02562 * 17 2 1 41 41 H 1.09000 * 109.47125 * 299.99763 * 17 2 1 42 42 H 0.96999 * 120.00860 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0321 -0.7103 1.2306 5 7 1.2003 -1.1971 2.0730 6 7 1.6672 -1.8578 3.2167 7 6 0.7913 -2.3699 4.1039 8 8 -0.4012 -2.2591 3.9119 9 6 1.2936 -3.0812 5.3339 10 6 0.1214 -3.5550 6.1540 11 6 -0.4120 -2.7377 7.1331 12 6 -1.4905 -3.1689 7.8820 13 6 -2.0293 -4.4248 7.6593 14 9 -3.0796 -4.8499 8.3950 15 6 -1.4907 -5.2447 6.6823 16 6 -0.4157 -4.8091 5.9308 17 6 2.0400 -0.7213 -1.2491 18 6 1.5378 -0.0110 -2.4797 19 1 0.9166 0.8669 -2.3806 20 6 1.8705 -0.4824 -3.7318 21 7 1.4319 0.1371 -4.8057 22 14 2.9445 -2.0013 -3.9031 23 1 2.0858 -3.2121 -3.9478 24 1 3.7360 -1.9092 -5.1560 25 1 3.8651 -2.0901 -2.7413 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6765 1.9565 0.8899 32 1 3.0940 -0.8086 1.4018 33 1 2.6209 -1.9468 3.3701 34 1 1.8997 -2.3967 5.9274 35 1 1.8986 -3.9378 5.0367 36 1 0.0118 -1.7602 7.3101 37 1 -1.9095 -2.5286 8.6440 38 1 -1.9100 -6.2246 6.5080 39 1 0.0048 -5.4488 5.1689 40 1 3.1300 -0.7217 -1.2488 41 1 1.6767 -1.7490 -1.2490 42 1 1.6656 -0.1948 -5.6867 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755570077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:37 Heat of formation + Delta-G solvation = -28.312748 kcal Electronic energy + Delta-G solvation = -23646.751551 eV Core-core repulsion = 19927.944022 eV Total energy + Delta-G solvation = -3718.807529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.14864 -40.15715 -38.86465 -37.64771 -35.35257 -33.05593 -32.43429 -31.45186 -31.02545 -27.89393 -27.42157 -26.43794 -24.02267 -23.39246 -22.45241 -21.40305 -20.58336 -18.38507 -17.92744 -17.05137 -17.01595 -16.77392 -16.70529 -15.82789 -15.81354 -15.27463 -14.49485 -14.30096 -14.13635 -14.01182 -13.88309 -13.65865 -13.26139 -13.05124 -12.52282 -12.43971 -12.34892 -12.09748 -11.87831 -11.37965 -11.30554 -11.12411 -11.02449 -10.90205 -10.62160 -10.20766 -10.06901 -9.92857 -9.68556 -9.64697 -9.40081 -9.05059 -8.86564 -8.63121 -8.55043 -6.05278 -4.02904 0.78434 0.94269 2.03664 2.55849 2.90672 3.28864 3.31109 3.36740 3.37463 3.96912 4.21833 4.35006 4.42898 4.57995 4.59325 4.76016 4.89812 5.01446 5.06559 5.19737 5.20542 5.28708 5.57106 5.65290 5.77554 5.81322 5.83061 5.89891 5.95216 6.14246 6.28752 6.46108 6.55252 6.56840 6.75907 6.91456 7.00784 7.10741 7.13447 7.21409 7.31027 7.67294 7.75080 8.49973 8.53112 8.99367 9.56393 11.07402 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.002337 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.209509 B =11976.473195 C =12235.139748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.004 4.004 3 C -0.124 4.124 4 C 0.102 3.898 5 N -0.246 5.246 6 N -0.596 5.596 7 C 0.527 3.473 8 O -0.498 6.498 9 C -0.096 4.096 10 C -0.077 4.077 11 C -0.074 4.074 12 C -0.152 4.152 13 C 0.097 3.903 14 F -0.142 7.142 15 C -0.152 4.152 16 C -0.074 4.074 17 C 0.002 3.998 18 C -0.511 4.511 19 H 0.081 0.919 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.267 1.267 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.101 0.899 33 H 0.378 0.622 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -7.499 25.237 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.007 4.007 3 C -0.183 4.183 4 C -0.113 4.113 5 N -0.047 5.047 6 N -0.338 5.338 7 C 0.313 3.687 8 O -0.369 6.369 9 C -0.138 4.138 10 C -0.078 4.078 11 C -0.093 4.093 12 C -0.171 4.171 13 C 0.078 3.922 14 F -0.120 7.120 15 C -0.171 4.171 16 C -0.092 4.092 17 C -0.037 4.037 18 C -0.549 4.549 19 H 0.099 0.901 20 C -0.133 4.133 21 N -0.540 5.540 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.192 1.192 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.215 0.785 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.803 -7.655 25.306 26.451 hybrid contribution 1.891 -1.023 -0.124 2.154 sum 2.695 -8.678 25.182 26.771 Atomic orbital electron populations 1.21620 0.93319 1.01873 1.00911 1.19579 0.96914 0.94676 0.89504 1.21735 1.00309 0.94450 1.01776 1.26713 0.96242 0.93656 0.94660 1.74633 1.27645 1.07740 0.94681 1.47190 1.08574 1.56823 1.21191 1.20336 0.86529 0.78734 0.83090 1.90762 1.15509 1.55497 1.75136 1.20646 0.97278 1.01876 0.93975 1.19283 0.97395 0.94562 0.96527 1.20855 0.94961 0.99108 0.94327 1.21096 0.98297 0.95224 1.02480 1.17736 0.87031 0.94244 0.93201 1.91498 1.54816 1.90143 1.75559 1.21107 0.98322 1.00835 0.96795 1.20874 0.94943 0.95539 0.97842 1.19627 0.96161 0.95637 0.92253 1.21048 1.31928 1.13494 0.88381 0.90085 1.24979 0.95730 0.96662 0.95966 1.69890 1.45787 1.40489 0.97882 0.86864 0.81244 0.84104 0.77542 1.20399 1.21461 1.19182 0.94154 0.91193 0.93103 0.93215 0.90027 0.94391 0.88191 0.78483 0.87473 0.87449 0.85035 0.84653 0.84629 0.84992 0.96306 0.96790 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 7.45 37.16 0.28 -2.09 16 2 C 0.00 -0.07 0.75 -155.67 -0.12 -0.19 16 3 C -0.12 -2.12 8.20 37.16 0.30 -1.81 16 4 C 0.10 1.63 9.56 -13.87 -0.13 1.50 16 5 N -0.25 -4.12 9.70 32.67 0.32 -3.81 16 6 N -0.60 -7.57 6.25 31.22 0.20 -7.38 16 7 C 0.53 6.79 7.94 -10.98 -0.09 6.70 16 8 O -0.50 -8.94 16.37 5.54 0.09 -8.85 16 9 C -0.10 -0.72 5.83 -29.03 -0.17 -0.89 16 10 C -0.08 -0.71 4.37 -104.62 -0.46 -1.17 16 11 C -0.07 -0.66 9.70 -39.59 -0.38 -1.05 16 12 C -0.15 -1.40 10.03 -39.51 -0.40 -1.80 16 13 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 14 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 15 C -0.15 -1.43 10.03 -39.52 -0.40 -1.82 16 16 C -0.07 -0.68 9.70 -39.59 -0.38 -1.06 16 17 C 0.00 0.04 3.09 -27.89 -0.09 -0.05 16 18 C -0.51 -13.47 8.20 -34.44 -0.28 -13.75 16 19 H 0.08 2.27 5.92 -52.48 -0.31 1.96 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 22 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 26 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 27 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 28 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.55 6.62 -51.93 -0.34 1.21 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.28 8.00 -52.48 -0.42 0.86 16 33 H 0.38 3.24 8.63 -182.60 -1.58 1.67 16 34 H 0.11 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.11 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -33.98 359.07 -7.68 -41.66 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.14 Total: -0.78 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -2.70 Total: -14.99 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 1.29 Total: -37.26 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.98 -7.68 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755570077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.351 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds