Wall clock time and date at job start Tue Mar 31 2020 08:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47006 * 2 1 4 4 C 1.50698 * 109.46557 * 119.99304 * 2 1 3 5 5 N 1.28013 * 120.00632 * 0.02562 * 4 2 1 6 6 N 1.40091 * 120.00432 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00219 * 179.97438 * 6 5 4 8 8 O 1.21300 * 119.99769 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.38244 * 119.97486 * 269.72932 * 10 9 7 12 12 C 1.38202 * 120.02338 * 179.72838 * 11 10 9 13 13 C 1.38457 * 119.97200 * 0.56577 * 12 11 10 14 14 F 1.35099 * 120.02649 * 179.68648 * 13 12 11 15 15 C 1.38455 * 119.95159 * 359.70550 * 13 12 11 16 16 C 1.38200 * 119.97412 * 0.02562 * 15 13 12 17 17 C 1.52993 * 109.47403 * 239.99482 * 2 1 3 18 18 C 1.50698 * 109.47410 * 60.00344 * 17 2 1 19 19 H 1.08003 * 119.99408 * 359.97438 * 18 17 2 20 20 C 1.37869 * 120.00466 * 180.02562 * 18 17 2 21 21 N 1.31511 * 120.00589 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99987 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46774 * 89.99721 * 22 20 18 24 24 H 1.48489 * 109.47265 * 210.00152 * 22 20 18 25 25 H 1.48497 * 109.46777 * 330.00515 * 22 20 18 26 26 H 1.08999 * 109.47694 * 300.00677 * 1 2 3 27 27 H 1.09004 * 109.47003 * 60.00868 * 1 2 3 28 28 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47311 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47028 * 299.99427 * 3 2 1 31 31 H 1.09005 * 109.47780 * 59.99468 * 3 2 1 32 32 H 1.08009 * 120.00081 * 180.02562 * 4 2 1 33 33 H 0.97005 * 120.00319 * 359.97438 * 6 5 4 34 34 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 35 35 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 36 36 H 1.07996 * 119.98449 * 359.97438 * 11 10 9 37 37 H 1.07995 * 120.01101 * 180.25281 * 12 11 10 38 38 H 1.08001 * 120.01453 * 179.97438 * 15 13 12 39 39 H 1.08008 * 119.98737 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47142 * 180.02562 * 17 2 1 41 41 H 1.09000 * 109.47125 * 299.99763 * 17 2 1 42 42 H 0.96999 * 120.00860 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0321 -0.7103 1.2306 5 7 1.2003 -1.1971 2.0730 6 7 1.6672 -1.8578 3.2167 7 6 0.7913 -2.3699 4.1039 8 8 -0.4012 -2.2591 3.9119 9 6 1.2936 -3.0812 5.3339 10 6 0.1214 -3.5550 6.1540 11 6 -0.4120 -2.7377 7.1331 12 6 -1.4905 -3.1689 7.8820 13 6 -2.0293 -4.4248 7.6593 14 9 -3.0796 -4.8499 8.3950 15 6 -1.4907 -5.2447 6.6823 16 6 -0.4157 -4.8091 5.9308 17 6 2.0400 -0.7213 -1.2491 18 6 1.5378 -0.0110 -2.4797 19 1 0.9166 0.8669 -2.3806 20 6 1.8705 -0.4824 -3.7318 21 7 1.4319 0.1371 -4.8057 22 14 2.9445 -2.0013 -3.9031 23 1 2.0858 -3.2121 -3.9478 24 1 3.7360 -1.9092 -5.1560 25 1 3.8651 -2.0901 -2.7413 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6765 1.9565 0.8899 32 1 3.0940 -0.8086 1.4018 33 1 2.6209 -1.9468 3.3701 34 1 1.8997 -2.3967 5.9274 35 1 1.8986 -3.9378 5.0367 36 1 0.0118 -1.7602 7.3101 37 1 -1.9095 -2.5286 8.6440 38 1 -1.9100 -6.2246 6.5080 39 1 0.0048 -5.4488 5.1689 40 1 3.1300 -0.7217 -1.2488 41 1 1.6767 -1.7490 -1.2490 42 1 1.6656 -0.1948 -5.6867 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755570077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:36 Heat of formation + Delta-G solvation = -49.413060 kcal Electronic energy + Delta-G solvation = -23647.666529 eV Core-core repulsion = 19927.944022 eV Total energy + Delta-G solvation = -3719.722507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.92505 -41.03069 -39.74276 -38.97599 -36.67353 -34.46228 -33.75901 -32.21441 -32.10173 -29.64297 -28.25629 -27.95208 -25.55982 -24.05005 -23.65072 -22.56955 -21.53292 -19.70647 -18.85063 -18.66976 -18.11378 -17.94929 -17.48510 -16.60975 -16.53762 -16.30695 -16.15001 -15.64139 -15.31061 -14.91703 -14.86841 -14.61053 -14.51867 -14.38345 -14.24232 -13.48525 -13.16303 -13.05172 -12.84857 -12.78956 -12.72090 -12.70517 -12.49902 -12.25609 -11.94102 -11.78629 -11.65904 -11.38128 -11.16570 -11.09588 -10.72822 -10.67501 -10.06153 -9.79073 -9.58202 -8.17948 -6.19228 0.07852 0.28355 0.92238 1.41043 1.41693 1.51997 1.62510 1.90143 2.43008 2.61297 3.17345 3.27942 3.56964 3.74385 3.75239 3.87949 3.95921 4.09750 4.22131 4.30147 4.30764 4.38978 4.58319 4.60959 4.63181 4.90888 4.95812 4.99249 5.01633 5.07091 5.13307 5.14861 5.23695 5.33225 5.38840 5.43413 5.48883 5.55603 5.67242 5.78236 5.90719 6.24483 6.41183 6.64778 6.88181 7.43031 7.54700 8.97876 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.002337 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.209509 B =11976.473195 C =12235.139748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.004 4.004 3 C -0.119 4.119 4 C 0.106 3.894 5 N -0.282 5.282 6 N -0.584 5.584 7 C 0.525 3.475 8 O -0.558 6.558 9 C -0.083 4.083 10 C -0.088 4.088 11 C -0.081 4.081 12 C -0.161 4.161 13 C 0.074 3.926 14 F -0.151 7.151 15 C -0.162 4.162 16 C -0.084 4.084 17 C 0.004 3.996 18 C -0.505 4.505 19 H 0.048 0.952 20 C 0.002 3.998 21 N -0.954 5.954 22 Si 0.938 3.062 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.237 1.237 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.141 0.859 33 H 0.403 0.597 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.036 0.964 41 H 0.008 0.992 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -8.661 27.534 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.007 4.007 3 C -0.177 4.177 4 C -0.109 4.109 5 N -0.084 5.084 6 N -0.328 5.328 7 C 0.313 3.687 8 O -0.433 6.433 9 C -0.123 4.123 10 C -0.088 4.088 11 C -0.099 4.099 12 C -0.179 4.179 13 C 0.054 3.946 14 F -0.130 7.130 15 C -0.181 4.181 16 C -0.102 4.102 17 C -0.034 4.034 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.194 4.194 21 N -0.595 5.595 22 Si 0.763 3.237 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.160 1.160 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.244 0.756 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.795 -8.817 27.636 29.256 hybrid contribution 0.874 -0.613 -0.771 1.317 sum 4.669 -9.430 26.866 28.853 Atomic orbital electron populations 1.21490 0.94933 1.00412 0.99955 1.19397 0.95583 0.95746 0.89968 1.21649 1.01530 0.93274 1.01263 1.26353 0.97865 0.93339 0.93293 1.74471 1.29773 1.07991 0.96163 1.47044 1.10121 1.55882 1.19750 1.21388 0.85767 0.77677 0.83831 1.90748 1.18149 1.57797 1.76573 1.20731 0.96984 1.03242 0.91361 1.19591 0.98050 0.94539 0.96664 1.21179 0.94712 0.99926 0.94106 1.21353 0.98533 0.95083 1.02956 1.18036 0.87416 0.95155 0.93948 1.91466 1.55330 1.90318 1.75875 1.21339 0.98622 1.01403 0.96710 1.21171 0.94834 0.96146 0.98019 1.19547 0.96929 0.94951 0.91974 1.21366 1.30346 1.12363 0.90215 0.93345 1.25892 0.97629 1.00103 0.95730 1.70054 1.48186 1.42802 0.98487 0.85837 0.79759 0.79682 0.78420 1.20549 1.21562 1.16020 0.93303 0.93802 0.94724 0.91144 0.93084 0.92372 0.84244 0.75587 0.83741 0.84096 0.83039 0.83336 0.83558 0.83419 0.94548 0.97384 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 7.45 71.98 0.54 -3.87 16 2 C 0.00 -0.15 0.75 -52.93 -0.04 -0.19 16 3 C -0.12 -3.86 8.20 71.98 0.59 -3.27 16 4 C 0.11 3.02 9.56 88.66 0.85 3.86 16 5 N -0.28 -8.71 9.70 -50.46 -0.49 -9.20 16 6 N -0.58 -12.62 6.25 -173.51 -1.08 -13.71 16 7 C 0.52 11.90 7.94 87.66 0.70 12.60 16 8 O -0.56 -19.36 16.37 -3.09 -0.05 -19.41 16 9 C -0.08 -0.88 5.83 29.10 0.17 -0.71 16 10 C -0.09 -1.38 4.37 -19.86 -0.09 -1.47 16 11 C -0.08 -1.28 9.70 22.26 0.22 -1.06 16 12 C -0.16 -2.80 10.03 22.31 0.22 -2.58 16 13 C 0.07 1.48 7.30 22.37 0.16 1.64 16 14 F -0.15 -3.31 17.27 44.97 0.78 -2.54 16 15 C -0.16 -2.93 10.03 22.31 0.22 -2.71 16 16 C -0.08 -1.38 9.70 22.26 0.22 -1.17 16 17 C 0.00 0.19 3.09 29.85 0.09 0.28 16 18 C -0.50 -27.05 8.20 25.60 0.21 -26.84 16 19 H 0.05 2.85 5.92 -2.91 -0.02 2.83 16 20 C 0.00 0.14 5.47 84.65 0.46 0.60 16 21 N -0.95 -58.57 13.96 21.44 0.30 -58.27 16 22 Si 0.94 42.67 27.47 68.60 1.88 44.55 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 26 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 27 H 0.04 1.93 6.62 -2.39 -0.02 1.91 16 28 H 0.03 1.45 8.06 -2.39 -0.02 1.43 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16 32 H 0.14 2.80 8.00 -2.91 -0.02 2.77 16 33 H 0.40 4.84 8.63 -213.32 -1.84 3.00 16 34 H 0.14 0.51 8.08 -2.39 -0.02 0.49 16 35 H 0.14 0.62 8.08 -2.39 -0.02 0.60 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.04 1.45 7.20 -2.39 -0.02 1.43 16 41 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 42 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.62 359.07 4.99 -72.63 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -0.86 Total: 10.82 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.52 Total: -24.88 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -1.28 Total: -81.18 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -77.62 4.99 -72.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755570077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.217 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds