Wall clock time and date at job start Tue Mar 31 2020 08:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 110.91348 * 2 1 4 4 C 1.54906 * 111.00484 * 236.09772 * 2 1 3 5 5 N 1.47423 * 104.83258 * 278.93223 * 4 2 1 6 6 C 1.36939 * 125.65055 * 155.91193 * 5 4 2 7 7 H 1.07996 * 119.99597 * 353.89893 * 6 5 4 8 8 C 1.38806 * 120.00166 * 173.89837 * 6 5 4 9 9 N 1.31619 * 120.00025 * 6.82734 * 8 6 5 10 10 Si 1.86801 * 120.00186 * 186.83208 * 8 6 5 11 11 H 1.48501 * 109.47003 * 94.98132 * 10 8 6 12 12 H 1.48494 * 109.47153 * 214.98667 * 10 8 6 13 13 H 1.48507 * 109.47022 * 334.98621 * 10 8 6 14 14 C 1.47486 * 108.75755 * 335.89354 * 5 4 2 15 15 C 1.54316 * 107.03611 * 1.02548 * 14 5 4 16 16 H 1.09004 * 110.72215 * 140.69113 * 15 14 5 17 17 N 1.46503 * 110.72150 * 263.78373 * 15 14 5 18 18 C 1.34774 * 120.00385 * 271.16278 * 17 15 14 19 19 O 1.21566 * 119.99646 * 359.97438 * 18 17 15 20 20 C 1.47724 * 120.00175 * 179.97438 * 18 17 15 21 21 C 1.39654 * 120.11695 * 359.71724 * 20 18 17 22 22 C 1.37841 * 119.87977 * 179.78929 * 21 20 18 23 23 C 1.38658 * 120.11275 * 0.49017 * 22 21 20 24 24 F 1.35102 * 119.87517 * 179.71896 * 23 22 21 25 25 C 1.38652 * 120.24470 * 359.74204 * 23 22 21 26 26 C 1.37843 * 120.11510 * 0.02562 * 25 23 22 27 27 H 1.08999 * 109.47023 * 296.09993 * 1 2 3 28 28 H 1.09003 * 109.46896 * 56.10079 * 1 2 3 29 29 H 1.09002 * 109.46827 * 176.09914 * 1 2 3 30 30 H 1.08997 * 109.46960 * 183.90192 * 3 2 1 31 31 H 1.09003 * 109.47308 * 303.89647 * 3 2 1 32 32 H 1.08996 * 109.46948 * 63.90195 * 3 2 1 33 33 H 1.08998 * 110.36885 * 37.77610 * 4 2 1 34 34 H 1.09007 * 110.36238 * 159.98854 * 4 2 1 35 35 H 0.97003 * 120.00351 * 179.97438 * 9 8 6 36 36 H 1.08999 * 110.03491 * 241.65957 * 14 5 4 37 37 H 1.09003 * 109.96401 * 120.34944 * 14 5 4 38 38 H 0.97002 * 119.99339 * 91.15518 * 17 15 14 39 39 H 1.07999 * 120.05613 * 0.02720 * 21 20 18 40 40 H 1.07992 * 119.94180 * 180.21116 * 22 21 20 41 41 H 1.07996 * 119.94057 * 179.97438 * 25 23 22 42 42 H 1.07995 * 120.05497 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7733 6 6 1.9462 -3.3000 -1.6071 7 1 1.8426 -3.1562 -2.6724 8 6 2.0108 -4.5837 -1.0830 9 7 2.0015 -4.7636 0.2208 10 14 2.1109 -6.0562 -2.2282 11 1 3.5326 -6.4423 -2.4148 12 1 1.3621 -7.1944 -1.6376 13 1 1.5175 -5.7021 -3.5428 14 6 2.0281 -2.2661 0.7007 15 6 2.0862 -0.8079 1.2022 16 1 1.4540 -0.6766 2.0805 17 7 3.4667 -0.4155 1.4963 18 6 3.9812 -0.6291 2.7235 19 8 3.2995 -1.1471 3.5866 20 6 5.3734 -0.2339 3.0198 21 6 6.1605 0.3559 2.0284 22 6 7.4576 0.7267 2.3115 23 6 7.9843 0.5058 3.5750 24 9 9.2580 0.8659 3.8456 25 6 7.2088 -0.0839 4.5616 26 6 5.9090 -0.4542 4.2905 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5732 -0.8530 29 1 -0.3633 -1.0253 -0.0699 30 1 3.1636 1.4026 -0.0699 31 1 1.6705 1.9733 -0.8530 32 1 1.7836 1.9300 0.9229 33 1 1.4673 -0.6461 -2.0837 34 1 3.1177 -0.5219 -1.4036 35 1 2.0462 -5.6607 0.5870 36 1 2.9052 -2.8126 1.0473 37 1 1.1207 -2.7477 1.0653 38 1 4.0104 -0.0019 0.8076 39 1 5.7524 0.5247 1.0428 40 1 8.0660 1.1860 1.5466 41 1 7.6241 -0.2541 5.5438 42 1 5.3059 -0.9137 5.0596 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972749942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:48 Heat of formation + Delta-G solvation = -49.125270 kcal Electronic energy + Delta-G solvation = -25419.954469 eV Core-core repulsion = 21700.244442 eV Total energy + Delta-G solvation = -3719.710027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.00478 -41.52267 -40.03933 -38.78033 -35.71627 -34.63314 -32.59634 -32.21195 -31.87068 -29.63339 -28.04695 -27.40190 -25.56807 -24.43529 -23.91558 -22.26387 -21.43975 -20.31030 -19.07888 -18.68819 -18.36368 -17.68055 -16.86611 -16.71942 -16.62712 -16.16604 -15.86881 -15.60497 -15.39302 -15.13639 -14.76661 -14.61782 -14.22540 -14.02018 -13.81952 -13.73351 -13.46908 -13.26758 -13.15114 -12.94110 -12.81250 -12.68229 -12.57300 -12.10115 -12.07873 -11.85313 -11.73392 -11.52518 -11.30955 -11.07608 -10.71756 -10.22256 -10.11510 -9.76628 -8.87458 -7.84347 -5.19632 -0.38366 0.17415 1.44501 1.46102 1.55246 1.71825 2.13183 2.49528 2.69451 3.10543 3.34444 3.48600 3.61827 3.68921 3.75431 3.84617 3.97841 4.07959 4.16306 4.24432 4.40739 4.53137 4.66524 4.76842 4.86170 4.86933 4.89775 4.97092 4.99850 5.04359 5.08679 5.14159 5.18510 5.23277 5.30427 5.36687 5.48126 5.57279 5.69545 5.73847 5.76757 6.17952 6.54173 7.07948 7.21401 7.78280 8.43296 9.25609 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.004112 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.073508 B = 6807.373136 C = 7768.111995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.621 5.621 6 C -0.237 4.237 7 H 0.087 0.913 8 C -0.067 4.067 9 N -0.952 5.952 10 Si 0.974 3.026 11 H -0.289 1.289 12 H -0.300 1.300 13 H -0.263 1.263 14 C 0.192 3.808 15 C 0.136 3.864 16 H 0.079 0.921 17 N -0.692 5.692 18 C 0.552 3.448 19 O -0.582 6.582 20 C -0.156 4.156 21 C -0.051 4.051 22 C -0.152 4.152 23 C 0.115 3.885 24 F -0.137 7.137 25 C -0.157 4.157 26 C -0.043 4.043 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.243 0.757 36 H 0.005 0.995 37 H 0.002 0.998 38 H 0.409 0.591 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 17.501 2.871 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.014 3.986 5 N -0.347 5.347 6 C -0.366 4.366 7 H 0.105 0.895 8 C -0.260 4.260 9 N -0.602 5.602 10 Si 0.803 3.197 11 H -0.217 1.217 12 H -0.227 1.227 13 H -0.187 1.187 14 C 0.066 3.934 15 C 0.030 3.970 16 H 0.097 0.903 17 N -0.344 5.344 18 C 0.340 3.660 19 O -0.464 6.464 20 C -0.159 4.159 21 C -0.070 4.070 22 C -0.171 4.171 23 C 0.096 3.904 24 F -0.115 7.115 25 C -0.176 4.176 26 C -0.062 4.062 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.023 0.977 37 H 0.020 0.980 38 H 0.248 0.752 39 H 0.175 0.825 40 H 0.188 0.812 41 H 0.180 0.820 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.654 16.951 3.446 19.342 hybrid contribution 0.252 -1.530 -0.391 1.600 sum 8.906 15.421 3.055 18.068 Atomic orbital electron populations 1.21598 0.92829 1.01063 1.02676 1.22004 0.96720 0.95929 0.92975 1.21664 1.01059 0.92318 1.03162 1.21898 0.97800 0.83183 0.95766 1.44794 1.86609 1.01664 1.01637 1.19483 1.41941 0.84907 0.90249 0.89481 1.25658 1.02854 1.00303 0.97193 1.70237 1.58215 1.20319 1.11387 0.85116 0.77200 0.78985 0.78417 1.21671 1.22693 1.18725 1.21179 0.97138 0.91450 0.83660 1.22117 0.82346 0.94737 0.97774 0.90298 1.45732 1.14325 1.61705 1.12604 1.18640 0.87278 0.77797 0.82243 1.90753 1.62464 1.45253 1.47889 1.20006 0.93519 1.05701 0.96712 1.21387 0.92955 0.93676 0.98943 1.21349 0.96345 1.03172 0.96203 1.18117 0.79337 0.98032 0.94944 1.91520 1.36223 1.89376 1.94424 1.21283 0.93791 1.01523 1.00977 1.21185 0.94563 0.94765 0.95674 0.91606 0.90225 0.95175 0.91663 0.90188 0.91684 0.93339 0.94866 0.94769 0.97722 0.98005 0.75205 0.82521 0.81202 0.81984 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 8.57 71.98 0.62 -3.05 16 2 C -0.07 -2.26 0.83 -50.79 -0.04 -2.30 16 3 C -0.12 -2.52 8.22 71.98 0.59 -1.92 16 4 C 0.14 5.07 6.14 86.85 0.53 5.60 16 5 N -0.62 -31.01 3.39 -690.83 -2.34 -33.35 16 6 C -0.24 -13.12 10.26 84.03 0.86 -12.26 16 7 H 0.09 4.55 7.84 -2.91 -0.02 4.52 16 8 C -0.07 -3.89 5.48 84.86 0.47 -3.42 16 9 N -0.95 -59.77 10.36 21.65 0.22 -59.54 16 10 Si 0.97 46.47 29.56 68.60 2.03 48.49 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 14 C 0.19 9.83 4.82 86.64 0.42 10.25 16 15 C 0.14 5.15 2.54 46.18 0.12 5.27 16 16 H 0.08 3.17 7.53 -2.38 -0.02 3.16 16 17 N -0.69 -22.15 4.46 -439.91 -1.96 -24.12 16 18 C 0.55 19.18 7.77 86.75 0.67 19.85 16 19 O -0.58 -25.42 16.03 -3.92 -0.06 -25.48 16 20 C -0.16 -4.15 5.87 -20.09 -0.12 -4.27 16 21 C -0.05 -0.99 9.54 22.52 0.21 -0.78 16 22 C -0.15 -2.53 10.01 22.28 0.22 -2.31 16 23 C 0.12 2.17 7.31 22.47 0.16 2.33 16 24 F -0.14 -2.60 17.26 44.97 0.78 -1.83 16 25 C -0.16 -3.04 10.01 22.28 0.22 -2.82 16 26 C -0.04 -1.05 9.59 22.52 0.22 -0.83 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 1.11 7.91 -2.39 -0.02 1.09 16 30 H 0.06 1.13 6.43 -2.39 -0.02 1.12 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 34 H 0.03 1.13 7.98 -2.38 -0.02 1.11 16 35 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.00 0.27 7.27 -2.39 -0.02 0.26 16 37 H 0.00 0.11 7.56 -2.39 -0.02 0.09 16 38 H 0.41 10.35 5.04 -92.71 -0.47 9.89 16 39 H 0.16 2.31 6.40 -2.91 -0.02 2.29 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.14 3.55 7.65 -2.91 -0.02 3.53 16 Total: -1.00 -75.40 345.99 4.39 -71.01 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.57 Total: 15.48 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.16 Total: 9.34 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -4.08 Total: -117.01 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -75.40 4.39 -71.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.888 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds