Wall clock time and date at job start Tue Mar 31 2020 08:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.78335 * 2 1 4 4 C 1.54330 * 110.71673 * 123.23632 * 2 1 3 5 5 N 1.47026 * 107.26840 * 96.16971 * 4 2 1 6 6 C 1.36932 * 125.64483 * 178.97605 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00288 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46967 * 59.99522 * 10 8 6 12 12 H 1.48490 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46744 * 300.00148 * 10 8 6 14 14 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 15 15 C 1.54907 * 104.83524 * 24.12518 * 14 5 4 16 16 H 1.09000 * 111.00618 * 204.91301 * 15 14 5 17 17 N 1.46508 * 111.00214 * 81.10542 * 15 14 5 18 18 C 1.34769 * 119.99941 * 86.45493 * 17 15 14 19 19 O 1.21568 * 120.00216 * 0.02562 * 18 17 15 20 20 C 1.47729 * 119.99689 * 180.02562 * 18 17 15 21 21 C 1.39656 * 120.11962 * 359.72119 * 20 18 17 22 22 C 1.37836 * 119.87588 * 179.74592 * 21 20 18 23 23 C 1.38655 * 120.12164 * 0.51176 * 22 21 20 24 24 F 1.35103 * 119.87836 * 179.74764 * 23 22 21 25 25 C 1.38651 * 120.23730 * 359.76232 * 23 22 21 26 26 C 1.37841 * 120.12149 * 359.97438 * 25 23 22 27 27 H 1.08998 * 109.47047 * 298.21692 * 1 2 3 28 28 H 1.09000 * 109.46907 * 58.21733 * 1 2 3 29 29 H 1.09001 * 109.47302 * 178.21808 * 1 2 3 30 30 H 1.08994 * 109.47458 * 181.78306 * 3 2 1 31 31 H 1.09010 * 109.46817 * 301.78688 * 3 2 1 32 32 H 1.09000 * 109.47214 * 61.77667 * 3 2 1 33 33 H 1.08998 * 109.88224 * 336.75291 * 4 2 1 34 34 H 1.08998 * 109.88221 * 215.58683 * 4 2 1 35 35 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 36 36 H 1.08997 * 110.36858 * 142.96748 * 14 5 4 37 37 H 1.08999 * 110.36307 * 265.28963 * 14 5 4 38 38 H 0.97001 * 119.99338 * 266.45591 * 17 15 14 39 39 H 1.07999 * 120.05813 * 359.97438 * 21 20 18 40 40 H 1.07997 * 119.93661 * 180.25616 * 22 21 20 41 41 H 1.08002 * 119.94096 * 179.97438 * 25 23 22 42 42 H 1.07999 * 120.05868 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 2.3715 -2.1532 0.7391 6 6 2.8930 -3.1637 1.5020 7 1 3.1232 -2.9909 2.5429 8 6 3.1269 -4.4100 0.9371 9 7 2.8478 -4.6202 -0.3318 10 14 3.8390 -5.7883 1.9775 11 1 2.9252 -6.0746 3.1124 12 1 3.9925 -7.0083 1.1450 13 1 5.1661 -5.3774 2.5021 14 6 2.0126 -2.2510 -0.6874 15 6 2.0789 -0.7956 -1.2137 16 1 1.4396 -0.6664 -2.0871 17 7 3.4595 -0.4087 -1.5153 18 6 3.9879 -0.6845 -2.7240 19 8 3.3189 -1.2540 -3.5642 20 6 5.3801 -0.2949 -3.0278 21 6 6.1489 0.3646 -2.0663 22 6 7.4491 0.7212 -2.3533 23 6 7.9904 0.4357 -3.5975 24 9 9.2637 0.7920 -3.8753 25 6 7.2296 -0.2137 -4.5576 26 6 5.9301 -0.5797 -4.2794 27 1 -0.3633 0.4859 0.9055 28 1 -0.3633 0.5413 -0.8736 29 1 -0.3634 -1.0272 -0.0320 30 1 3.1621 1.4057 -0.0320 31 1 1.6957 1.9622 -0.8736 32 1 1.7475 1.9425 0.9055 33 1 1.3262 -0.8254 1.9978 34 1 2.9868 -0.3207 1.5777 35 1 3.0109 -5.4911 -0.7266 36 1 2.7292 -2.8788 -1.2167 37 1 1.0039 -2.6488 -0.7983 38 1 3.9931 0.0460 -0.8449 39 1 5.7267 0.5914 -1.0985 40 1 8.0458 1.2275 -1.6091 41 1 7.6560 -0.4333 -5.5253 42 1 5.3383 -1.0851 -5.0281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972749943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:51 Heat of formation + Delta-G solvation = -47.063554 kcal Electronic energy + Delta-G solvation = -25615.272311 eV Core-core repulsion = 21895.651686 eV Total energy + Delta-G solvation = -3719.620624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.00252 -41.48132 -40.04111 -38.75234 -35.70231 -34.64613 -32.59736 -32.20239 -31.84570 -29.66448 -28.02212 -27.39424 -25.51908 -24.42460 -23.91316 -22.30076 -21.34520 -20.27173 -19.06812 -18.69901 -18.33958 -17.71466 -16.90419 -16.70649 -16.59878 -16.16458 -15.84506 -15.57096 -15.29951 -15.12498 -14.66354 -14.62421 -14.21106 -14.15277 -13.78246 -13.72374 -13.61528 -13.23913 -13.05500 -12.99962 -12.82710 -12.60273 -12.54791 -12.16660 -12.07493 -11.77356 -11.74837 -11.43038 -11.34864 -11.01922 -10.73746 -10.21816 -10.07111 -9.74811 -8.83562 -7.74313 -5.19503 -0.36778 0.17790 1.44554 1.47361 1.54059 1.74892 2.19316 2.49504 2.71852 3.10681 3.34995 3.56432 3.63530 3.68884 3.74053 3.85001 3.98275 4.08125 4.16715 4.25130 4.42345 4.53060 4.68873 4.79193 4.84686 4.86422 4.89774 4.94296 4.99806 5.04142 5.08206 5.11892 5.21891 5.24356 5.31270 5.35239 5.49535 5.54546 5.68405 5.74635 5.85187 6.33101 6.58860 7.10448 7.25902 7.80791 8.44299 9.25804 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.004877 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.014802 B = 5739.763548 C = 7055.334924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.137 3.863 5 N -0.618 5.618 6 C -0.233 4.233 7 H 0.085 0.915 8 C -0.068 4.068 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.277 1.277 12 H -0.300 1.300 13 H -0.275 1.275 14 C 0.154 3.846 15 C 0.135 3.865 16 H 0.081 0.919 17 N -0.687 5.687 18 C 0.551 3.449 19 O -0.582 6.582 20 C -0.155 4.155 21 C -0.052 4.052 22 C -0.153 4.153 23 C 0.115 3.885 24 F -0.137 7.137 25 C -0.157 4.157 26 C -0.043 4.043 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.037 0.963 35 H 0.242 0.758 36 H 0.069 0.931 37 H -0.015 1.015 38 H 0.407 0.593 39 H 0.154 0.846 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.435 16.771 -3.117 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.075 4.075 3 C -0.183 4.183 4 C 0.013 3.987 5 N -0.344 5.344 6 C -0.362 4.362 7 H 0.103 0.897 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.204 1.204 12 H -0.227 1.227 13 H -0.201 1.201 14 C 0.028 3.972 15 C 0.029 3.971 16 H 0.099 0.901 17 N -0.338 5.338 18 C 0.340 3.660 19 O -0.464 6.464 20 C -0.159 4.159 21 C -0.071 4.071 22 C -0.171 4.171 23 C 0.095 3.905 24 F -0.115 7.115 25 C -0.175 4.175 26 C -0.062 4.062 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.002 0.998 38 H 0.246 0.754 39 H 0.172 0.828 40 H 0.187 0.813 41 H 0.181 0.819 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.054 16.195 -3.678 17.676 hybrid contribution 0.445 -1.380 0.556 1.553 sum 6.499 14.815 -3.122 16.476 Atomic orbital electron populations 1.21695 0.92418 1.01176 1.03139 1.21835 0.96916 0.96052 0.92648 1.21713 1.00753 0.92509 1.03343 1.21665 0.97227 0.84753 0.95098 1.44677 1.73980 1.08276 1.07420 1.19401 1.33232 0.90076 0.93452 0.89739 1.25608 1.02929 1.00140 0.97356 1.70111 1.55253 1.22034 1.12481 0.85193 0.78587 0.78405 0.77416 1.20352 1.22680 1.20086 1.21946 0.96706 0.93294 0.85292 1.22205 0.82230 0.95513 0.97141 0.90141 1.45619 1.14533 1.59195 1.14428 1.18590 0.87110 0.78184 0.82116 1.90737 1.63151 1.43689 1.48814 1.20051 0.93820 1.04906 0.97095 1.21362 0.93174 0.93829 0.98724 1.21334 0.96097 1.03287 0.96389 1.18090 0.79382 0.97991 0.95033 1.91518 1.36234 1.89628 1.94133 1.21283 0.93909 1.01148 1.01176 1.21184 0.94488 0.95096 0.95472 0.90286 0.90986 0.94874 0.92199 0.91285 0.90280 0.95625 0.94485 0.94819 0.91296 0.99754 0.75438 0.82849 0.81272 0.81904 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.44 71.98 0.61 -2.90 16 2 C -0.07 -2.22 0.81 -50.99 -0.04 -2.26 16 3 C -0.13 -2.63 8.16 71.98 0.59 -2.04 16 4 C 0.14 5.15 6.41 86.73 0.56 5.71 16 5 N -0.62 -30.81 3.39 -691.99 -2.35 -33.16 16 6 C -0.23 -12.82 10.27 84.03 0.86 -11.96 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 8 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 9 N -0.95 -58.82 10.09 21.65 0.22 -58.60 16 10 Si 0.98 46.29 29.55 68.60 2.03 48.31 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.15 7.84 5.26 86.86 0.46 8.30 16 15 C 0.14 5.16 2.56 46.38 0.12 5.28 16 16 H 0.08 3.17 7.63 -2.39 -0.02 3.16 16 17 N -0.69 -23.34 4.63 -438.93 -2.03 -25.37 16 18 C 0.55 20.32 7.77 86.75 0.67 21.00 16 19 O -0.58 -26.32 16.09 -3.93 -0.06 -26.38 16 20 C -0.16 -4.50 5.87 -20.09 -0.12 -4.62 16 21 C -0.05 -1.15 9.54 22.52 0.21 -0.94 16 22 C -0.15 -2.86 10.01 22.27 0.22 -2.64 16 23 C 0.11 2.35 7.31 22.47 0.16 2.52 16 24 F -0.14 -2.79 17.26 44.97 0.78 -2.02 16 25 C -0.16 -3.30 10.01 22.27 0.22 -3.07 16 26 C -0.04 -1.15 9.59 22.52 0.22 -0.93 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.11 7.44 -2.39 -0.02 1.09 16 30 H 0.06 1.15 6.21 -2.39 -0.01 1.14 16 31 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.03 0.97 7.84 -2.39 -0.02 0.95 16 34 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16 35 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.07 4.18 5.87 -2.39 -0.01 4.16 16 37 H -0.02 -0.87 7.71 -2.39 -0.02 -0.88 16 38 H 0.41 11.46 4.85 -92.71 -0.45 11.01 16 39 H 0.15 2.73 6.40 -2.91 -0.02 2.71 16 40 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.14 3.80 7.65 -2.91 -0.02 3.78 16 Total: -1.00 -73.51 344.08 4.38 -69.13 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.59 Total: 20.09 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.21 Total: 8.00 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.16 Total: -117.13 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.51 4.38 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.066 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds