Wall clock time and date at job start Tue Mar 31 2020 08:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.88356 * 2 1 4 4 C 1.55134 * 111.19074 * 236.07532 * 2 1 3 5 5 N 1.47426 * 104.71956 * 279.18908 * 4 2 1 6 6 C 1.34776 * 125.64701 * 155.82179 * 5 4 2 7 7 O 1.21570 * 119.99841 * 4.54177 * 6 5 4 8 8 C 1.47696 * 119.99765 * 184.27030 * 6 5 4 9 9 C 1.39652 * 120.16624 * 313.11130 * 8 6 5 10 10 C 1.37861 * 119.87717 * 179.70027 * 9 8 6 11 11 C 1.38462 * 120.21745 * 0.59891 * 10 9 8 12 12 C 1.38207 * 120.33789 * 359.67525 * 11 10 9 13 13 C 1.38323 * 120.11796 * 0.02562 * 12 11 10 14 14 F 1.35102 * 120.11185 * 180.02562 * 13 12 11 15 15 C 1.47019 * 108.70371 * 335.55108 * 5 4 2 16 16 C 1.54323 * 107.27147 * 1.29193 * 15 5 4 17 17 H 1.09005 * 110.72050 * 263.82686 * 16 15 5 18 18 N 1.46499 * 110.72250 * 140.55551 * 16 15 5 19 19 C 1.36935 * 120.00436 * 86.45073 * 18 16 15 20 20 H 1.08001 * 119.99830 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00541 * 180.02562 * 19 18 16 22 22 N 1.31623 * 120.00132 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00510 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47435 * 89.99972 * 23 21 19 25 25 H 1.48507 * 109.47428 * 210.00035 * 23 21 19 26 26 H 1.48503 * 109.47011 * 329.99551 * 23 21 19 27 27 H 1.08998 * 109.47029 * 296.11047 * 1 2 3 28 28 H 1.09002 * 109.47553 * 56.11555 * 1 2 3 29 29 H 1.09000 * 109.47065 * 176.11691 * 1 2 3 30 30 H 1.09004 * 109.47065 * 183.88087 * 3 2 1 31 31 H 1.08998 * 109.47698 * 303.88513 * 3 2 1 32 32 H 1.09006 * 109.46817 * 63.88576 * 3 2 1 33 33 H 1.08999 * 110.49196 * 160.34753 * 4 2 1 34 34 H 1.08998 * 110.34592 * 37.95307 * 4 2 1 35 35 H 1.08000 * 120.06507 * 359.97301 * 9 8 6 36 36 H 1.08001 * 119.89312 * 180.27130 * 10 9 8 37 37 H 1.07994 * 119.83615 * 179.69890 * 11 10 9 38 38 H 1.08000 * 119.94106 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.87961 * 120.70593 * 15 5 4 40 40 H 1.09001 * 109.88636 * 241.71917 * 15 5 4 41 41 H 0.96998 * 119.99993 * 266.45532 * 18 16 15 42 42 H 0.97001 * 120.00910 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0908 -0.8073 -1.2002 5 7 2.0139 -2.2161 -0.7728 6 6 1.9471 -3.2833 -1.5931 7 8 2.0304 -3.1311 -2.7964 8 6 1.7789 -4.6383 -1.0299 9 6 2.5676 -5.0544 0.0448 10 6 2.4012 -6.3182 0.5699 11 6 1.4636 -7.1805 0.0271 12 6 0.6823 -6.7800 -1.0402 13 6 0.8332 -5.5128 -1.5740 14 9 0.0690 -5.1213 -2.6170 15 6 2.0286 -2.2644 0.6966 16 6 2.0862 -0.8076 1.2024 17 1 3.1134 -0.5155 1.4210 18 7 1.2344 -0.6342 2.3816 19 6 1.7297 -0.9031 3.6296 20 1 2.7485 -1.2427 3.7446 21 6 0.9226 -0.7394 4.7469 22 7 -0.3189 -0.3252 4.6069 23 14 1.5985 -1.1056 6.4493 24 1 2.2065 0.1251 7.0158 25 1 0.4956 -1.5641 7.3318 26 1 2.6307 -2.1690 6.3539 27 1 -0.3633 0.4523 0.9228 28 1 -0.3634 0.5729 -0.8531 29 1 -0.3633 -1.0253 -0.0696 30 1 3.1629 1.4035 -0.0696 31 1 1.6697 1.9733 -0.8531 32 1 1.7823 1.9302 0.9228 33 1 3.1252 -0.5269 -1.3987 34 1 1.4764 -0.6455 -2.0859 35 1 3.3033 -4.3859 0.4668 36 1 3.0080 -6.6387 1.4039 37 1 1.3418 -8.1708 0.4401 38 1 -0.0474 -7.4576 -1.4583 39 1 1.1219 -2.7477 1.0606 40 1 2.9050 -2.8136 1.0407 41 1 0.3195 -0.3290 2.2784 42 1 -0.8832 -0.2111 5.3876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995371171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:24 Heat of formation + Delta-G solvation = -34.568139 kcal Electronic energy + Delta-G solvation = -25782.878324 eV Core-core repulsion = 22063.799541 eV Total energy + Delta-G solvation = -3719.078783 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.90158 -40.31913 -38.78848 -37.64678 -34.18735 -33.28651 -31.38413 -30.84099 -30.60379 -27.62993 -27.02033 -26.47402 -24.20874 -23.53374 -22.68632 -21.40394 -19.68267 -18.74392 -17.55038 -17.29841 -17.03232 -16.50757 -15.93632 -15.56861 -15.47293 -14.91529 -14.62522 -14.20052 -14.09704 -13.81950 -13.55209 -13.29090 -13.06691 -12.72265 -12.54640 -12.38280 -12.25314 -12.13777 -11.97660 -11.56709 -11.33656 -11.26824 -11.07284 -10.94043 -10.59945 -10.52611 -10.26193 -9.93221 -9.82852 -9.68016 -9.23855 -9.02342 -8.85294 -8.35501 -7.12567 -5.88952 -3.19471 0.75779 1.05459 2.74952 3.10475 3.35880 3.41345 3.43218 3.55029 4.10300 4.41465 4.50833 4.60117 4.77438 4.88208 5.03840 5.06645 5.12517 5.16982 5.47236 5.55230 5.55970 5.67270 5.75964 5.80857 5.86905 5.87411 5.95207 6.01481 6.04613 6.09998 6.17011 6.23335 6.31162 6.35095 6.39237 6.55600 6.61295 6.67392 6.72038 6.86907 7.58899 7.70578 8.24931 8.29537 9.41303 9.95466 10.30501 11.33107 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.005084 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.619943 B = 5506.342177 C = 7018.124312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.572 3.428 7 O -0.539 6.539 8 C -0.155 4.155 9 C -0.058 4.058 10 C -0.133 4.133 11 C -0.073 4.073 12 C -0.162 4.162 13 C 0.144 3.856 14 F -0.126 7.126 15 C 0.070 3.930 16 C 0.180 3.820 17 H 0.067 0.933 18 N -0.711 5.711 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.390 0.610 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -8.376 -9.323 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.360 3.640 7 O -0.418 6.418 8 C -0.159 4.159 9 C -0.076 4.076 10 C -0.151 4.151 11 C -0.091 4.091 12 C -0.181 4.181 13 C 0.124 3.876 14 F -0.105 7.105 15 C -0.056 4.056 16 C 0.068 3.932 17 H 0.085 0.915 18 N -0.353 5.353 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.227 0.773 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.501 -8.350 -9.855 13.678 hybrid contribution -0.157 -0.202 0.901 0.936 sum 4.344 -8.552 -8.954 13.121 Atomic orbital electron populations 1.21651 0.93516 1.01846 1.01998 1.22024 0.96553 0.95399 0.94752 1.21646 1.00227 0.94528 1.02233 1.22389 1.00695 0.79613 0.97709 1.48386 1.71096 1.05869 1.08147 1.17689 0.77229 0.83449 0.85652 1.90785 1.50892 1.85863 1.14240 1.19965 1.00656 0.95253 1.00063 1.21387 0.97357 0.96474 0.92379 1.21188 0.99455 0.93693 1.00799 1.21170 0.93892 0.99883 0.94198 1.21096 1.02929 0.94820 0.99277 1.17642 0.90859 0.93021 0.86061 1.91548 1.73112 1.91212 1.54589 1.23529 1.01692 1.03054 0.77290 1.21216 0.95486 0.89540 0.86960 0.91532 1.42537 1.13201 1.79207 1.00343 1.19236 0.96753 1.38298 0.83644 0.91039 1.24746 0.95946 1.01750 0.97939 1.69651 1.06581 1.52181 1.29238 0.86208 0.77672 0.77910 0.84451 1.21626 1.21757 1.20692 0.90814 0.93229 0.92797 0.92778 0.93044 0.91270 0.91410 0.90773 0.84098 0.84614 0.84644 0.84244 0.90637 0.92104 0.77266 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.94 37.16 0.30 -1.87 16 2 C -0.09 -1.34 0.87 -152.24 -0.13 -1.47 16 3 C -0.13 -1.79 8.68 37.16 0.32 -1.47 16 4 C 0.12 1.80 5.83 -2.41 -0.01 1.79 16 5 N -0.60 -9.92 3.31 -171.55 -0.57 -10.49 16 6 C 0.57 10.09 7.20 -12.40 -0.09 10.00 16 7 O -0.54 -11.02 16.85 5.30 0.09 -10.93 16 8 C -0.16 -2.39 5.43 -104.91 -0.57 -2.96 16 9 C -0.06 -0.74 8.52 -39.19 -0.33 -1.07 16 10 C -0.13 -1.39 10.03 -39.64 -0.40 -1.79 16 11 C -0.07 -0.71 10.04 -39.51 -0.40 -1.10 16 12 C -0.16 -1.83 10.01 -39.56 -0.40 -2.23 16 13 C 0.14 2.13 7.25 -38.96 -0.28 1.85 16 14 F -0.13 -2.09 16.45 2.25 0.04 -2.05 16 15 C 0.07 1.18 5.07 -3.07 -0.02 1.16 16 16 C 0.18 3.26 2.85 -66.10 -0.19 3.07 16 17 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 18 N -0.71 -16.08 5.08 -51.66 -0.26 -16.34 16 19 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 20 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.46 13.06 55.49 0.72 -25.74 16 23 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 30 H 0.05 0.68 8.07 -51.93 -0.42 0.27 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.95 7.99 -51.93 -0.41 0.53 16 34 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 35 H 0.14 1.68 5.89 -52.49 -0.31 1.38 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 40 H 0.06 0.94 5.94 -51.93 -0.31 0.63 16 41 H 0.39 9.43 5.26 -40.82 -0.21 9.22 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -30.61 347.02 -7.96 -38.56 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.74 Total: 8.49 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.44 Total: -2.83 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.11 Total: -52.57 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.61 -7.96 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995371171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.994 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds