Wall clock time and date at job start Tue Mar 31 2020 08:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35279 * 117.00058 * 2 1 4 4 N 1.32768 * 120.61362 * 0.02562 * 3 2 1 5 5 C 1.31729 * 120.87482 * 179.97438 * 4 3 2 6 6 C 1.50700 * 118.90171 * 179.97438 * 5 4 3 7 7 N 1.31934 * 122.19313 * 0.02762 * 5 4 3 8 8 C 1.32191 * 121.13982 * 359.64887 * 7 5 4 9 9 C 1.39805 * 118.98021 * 0.62250 * 8 7 5 10 10 C 1.47532 * 120.97735 * 179.69821 * 9 8 7 11 11 O 1.21592 * 119.99729 * 179.72243 * 10 9 8 12 12 N 1.34778 * 120.00407 * 359.71356 * 10 9 8 13 13 C 1.46502 * 119.99933 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.91699 * 328.90620 * 13 12 10 15 15 C 1.55157 * 111.00342 * 204.99872 * 13 12 10 16 16 C 1.54325 * 102.94374 * 277.43173 * 15 13 12 17 17 N 1.47015 * 107.27065 * 337.80787 * 16 15 13 18 18 C 1.36939 * 125.64582 * 178.91905 * 17 16 15 19 19 H 1.08008 * 119.99871 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00149 * 0.02562 * 18 17 16 21 21 N 1.31616 * 119.99904 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00002 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47314 * 60.00224 * 22 20 18 24 24 H 1.48504 * 109.47272 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47353 * 300.00183 * 22 20 18 26 26 C 1.47425 * 108.70882 * 358.94051 * 17 16 15 27 27 H 1.09003 * 109.46901 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47235 * 299.99863 * 1 2 3 29 29 H 1.08997 * 109.47119 * 60.00510 * 1 2 3 30 30 H 1.09006 * 109.46909 * 90.00877 * 6 5 4 31 31 H 1.08997 * 109.46765 * 210.00411 * 6 5 4 32 32 H 1.09000 * 109.47133 * 330.00337 * 6 5 4 33 33 H 1.08006 * 120.50829 * 180.31181 * 8 7 5 34 34 H 0.96994 * 119.99564 * 0.02562 * 12 10 9 35 35 H 1.08996 * 110.71539 * 35.79484 * 15 13 12 36 36 H 1.08999 * 110.72004 * 158.88938 * 15 13 12 37 37 H 1.09000 * 109.88274 * 97.22627 * 16 15 13 38 38 H 1.08998 * 109.88226 * 218.38672 * 16 15 13 39 39 H 0.97001 * 120.00208 * 179.97438 * 21 20 18 40 40 H 1.08999 * 110.36633 * 265.29871 * 26 17 16 41 41 H 1.08996 * 110.37033 * 142.96251 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3321 2.3265 0.0005 5 6 1.9248 3.5029 0.0010 6 6 1.0743 4.7470 0.0010 7 7 3.2381 3.6283 0.0005 8 6 4.0262 2.5670 0.0064 9 6 3.4481 1.2941 0.0000 10 6 4.2858 0.0797 -0.0006 11 8 3.7642 -1.0187 -0.0011 12 7 5.6293 0.1876 -0.0006 13 6 6.4611 -1.0184 -0.0017 14 1 5.9643 -1.8342 0.5236 15 6 7.8575 -0.7313 0.6106 16 6 8.6363 -0.1231 -0.5748 17 7 7.9688 -0.5645 -1.8081 18 6 8.3391 -0.2241 -3.0817 19 1 7.7809 -0.6019 -3.9257 20 6 9.4319 0.6065 -3.2882 21 7 10.1118 1.0673 -2.2598 22 14 9.9375 1.0703 -5.0257 23 1 8.8169 1.7788 -5.6949 24 1 11.1251 1.9605 -4.9747 25 1 10.2720 -0.1590 -5.7887 26 6 6.8344 -1.4340 -1.4466 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 0.8690 5.0468 1.0287 31 1 1.6041 5.5493 -0.5125 32 1 0.1347 4.5448 -0.5132 33 1 5.1001 2.6815 0.0110 34 1 6.0453 1.0638 0.0001 35 1 7.7800 -0.0156 1.4290 36 1 8.3267 -1.6545 0.9506 37 1 8.6169 0.9649 -0.5119 38 1 9.6665 -0.4788 -0.5632 39 1 10.8757 1.6475 -2.4041 40 1 7.1353 -2.4813 -1.4742 41 1 5.9947 -1.2616 -2.1198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014658665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:39 Heat of formation + Delta-G solvation = 9.283398 kcal Electronic energy + Delta-G solvation = -25300.599045 eV Core-core repulsion = 21603.341769 eV Total energy + Delta-G solvation = -3697.257276 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54374 -39.31613 -38.72024 -37.15013 -34.08388 -33.48602 -32.87167 -31.71563 -29.47204 -28.99996 -27.76767 -26.98556 -24.53910 -24.10644 -23.52913 -21.18059 -20.10599 -19.83532 -18.75772 -17.97975 -17.57386 -16.71952 -16.51056 -15.72659 -15.12135 -14.89722 -14.71393 -14.59407 -14.45019 -14.23944 -13.77681 -13.44809 -13.18569 -12.85822 -12.69849 -12.37825 -12.23582 -11.93308 -11.80851 -11.80271 -11.53114 -10.97023 -10.89149 -10.72785 -10.46277 -10.36302 -10.16432 -9.97092 -9.70525 -9.68111 -9.53244 -9.21670 -8.74233 -8.51978 -6.82929 -5.72653 -3.05226 0.35152 0.95623 2.68600 2.95712 3.32541 3.40580 3.45165 3.45996 3.63815 3.70401 3.83733 4.49930 4.54799 4.69541 4.97225 5.04269 5.07859 5.09148 5.24675 5.27750 5.33057 5.40125 5.46374 5.47936 5.61029 5.76831 5.83010 5.99240 6.18819 6.36264 6.48008 6.49802 6.58653 6.69334 6.93056 7.02814 7.52085 7.54937 7.76428 7.79127 7.85083 8.24100 8.47133 9.21560 9.81338 10.46993 11.39174 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.003914 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.852868 B = 7151.609929 C = 7950.204069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.262 6.262 3 C 0.412 3.588 4 N -0.581 5.581 5 C 0.371 3.629 6 C -0.088 4.088 7 N -0.542 5.542 8 C 0.217 3.783 9 C -0.263 4.263 10 C 0.569 3.431 11 O -0.525 6.525 12 N -0.699 5.699 13 C 0.130 3.870 14 H 0.092 0.908 15 C -0.154 4.154 16 C 0.175 3.825 17 N -0.604 5.604 18 C -0.226 4.226 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.125 3.875 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.181 0.819 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.252 0.748 40 H 0.029 0.971 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.940 4.167 8.510 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.163 6.163 3 C 0.225 3.775 4 N -0.313 5.313 5 C 0.105 3.895 6 C -0.146 4.146 7 N -0.261 5.261 8 C 0.053 3.947 9 C -0.272 4.272 10 C 0.354 3.646 11 O -0.402 6.402 12 N -0.350 5.350 13 C 0.024 3.976 14 H 0.110 0.890 15 C -0.193 4.193 16 C 0.051 3.949 17 N -0.331 5.331 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.571 5.571 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.002 4.002 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.198 0.802 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.616 3.934 8.400 19.909 hybrid contribution 0.895 0.020 -1.017 1.355 sum -16.721 3.954 7.383 18.701 Atomic orbital electron populations 1.23046 0.77087 1.03687 1.02507 1.86545 1.22699 1.22483 1.84560 1.20089 0.88316 0.85159 0.83986 1.68044 1.41129 0.98534 1.23571 1.23186 0.88302 0.92151 0.85902 1.20655 0.98328 0.91418 1.04188 1.68311 1.05325 1.33625 1.18887 1.23489 1.00911 0.85634 0.84703 1.20999 0.92370 0.97128 1.16687 1.17464 0.82166 0.87704 0.77294 1.90803 1.72938 1.26859 1.49639 1.45702 1.04898 1.10486 1.73921 1.22171 0.90458 0.86712 0.98221 0.88959 1.23236 0.94784 1.01581 0.99668 1.21178 0.94435 0.97492 0.81835 1.44476 1.30829 1.55336 1.02468 1.19011 1.09805 1.24124 0.82486 0.90637 1.24755 0.98102 1.00063 0.97404 1.69932 1.21483 1.37881 1.27833 0.86219 0.77757 0.78018 0.83881 1.21265 1.21592 1.21216 1.21952 0.91279 0.94072 0.92931 0.87977 0.92018 0.91957 0.89137 0.88977 0.89459 0.80218 0.76505 0.91552 0.90834 0.93574 0.93718 0.93745 0.95343 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.41 101.05 1.05 1.37 16 2 O -0.26 -3.90 8.73 -38.68 -0.34 -4.24 16 3 C 0.41 6.15 7.54 -16.19 -0.12 6.03 16 4 N -0.58 -7.61 9.26 -10.47 -0.10 -7.70 16 5 C 0.37 4.45 7.64 -157.13 -1.20 3.25 16 6 C -0.09 -0.66 10.31 36.01 0.37 -0.29 16 7 N -0.54 -7.11 10.31 -10.44 -0.11 -7.22 16 8 C 0.22 2.89 10.80 -16.81 -0.18 2.70 16 9 C -0.26 -3.99 5.92 -104.57 -0.62 -4.61 16 10 C 0.57 9.79 7.78 -12.47 -0.10 9.70 16 11 O -0.53 -10.52 14.96 -15.86 -0.24 -10.75 16 12 N -0.70 -11.54 5.14 -52.76 -0.27 -11.81 16 13 C 0.13 2.30 3.43 -65.78 -0.23 2.07 16 14 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 15 C -0.15 -2.66 6.55 -24.90 -0.16 -2.82 16 16 C 0.18 3.99 5.36 -3.07 -0.02 3.98 16 17 N -0.60 -15.00 3.39 -170.07 -0.58 -15.58 16 18 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.31 10.31 55.49 0.57 -25.74 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.12 2.65 6.93 -2.52 -0.02 2.63 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.18 2.02 6.53 -52.48 -0.34 1.68 16 34 H 0.40 6.07 6.80 -40.82 -0.28 5.79 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 38 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -33.46 344.68 -7.91 -41.37 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.56 Total: 2.18 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: -1.47 Total: 17.32 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.48 Total: -68.04 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.57 Total: -14.99 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.46 -7.91 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014658665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.653 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds