Wall clock time and date at job start Tue Mar 31 2020 08:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31876 * 119.93481 * 2 1 4 4 N 1.28271 * 122.62580 * 180.02562 * 3 2 1 5 5 C 1.32492 * 122.22117 * 359.72016 * 4 3 2 6 6 O 1.35446 * 120.25697 * 180.29368 * 5 4 3 7 7 C 1.40452 * 119.49055 * 0.53854 * 5 4 3 8 8 C 1.47826 * 121.18056 * 179.75790 * 7 5 4 9 9 O 1.21549 * 120.00107 * 269.71615 * 8 7 5 10 10 N 1.34779 * 119.99511 * 89.71575 * 8 7 5 11 11 C 1.46506 * 119.99461 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.88944 * 31.11911 * 11 10 8 13 13 C 1.55154 * 111.00346 * 155.00110 * 11 10 8 14 14 C 1.54316 * 102.94339 * 153.57490 * 13 11 10 15 15 N 1.47023 * 107.27490 * 337.80367 * 14 13 11 16 16 C 1.36929 * 125.65147 * 178.95952 * 15 14 13 17 17 H 1.08004 * 119.99868 * 179.97438 * 16 15 14 18 18 C 1.38810 * 120.00512 * 359.97438 * 16 15 14 19 19 N 1.31625 * 119.99290 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00468 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46748 * 59.99890 * 20 18 16 22 22 H 1.48496 * 109.46980 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46942 * 299.99682 * 20 18 16 24 24 C 1.47433 * 108.69869 * 358.94415 * 15 14 13 25 25 C 1.38481 * 119.93083 * 180.02562 * 2 1 3 26 26 C 1.50700 * 121.05730 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47199 * 269.98142 * 1 2 3 28 28 H 1.08996 * 109.46476 * 29.98145 * 1 2 3 29 29 H 1.08999 * 109.46816 * 149.98140 * 1 2 3 30 30 H 0.96706 * 113.99976 * 270.24332 * 6 5 4 31 31 H 0.96995 * 120.00725 * 0.02562 * 10 8 7 32 32 H 1.09002 * 110.72211 * 271.93912 * 13 11 10 33 33 H 1.09004 * 110.72216 * 35.03077 * 13 11 10 34 34 H 1.08999 * 109.88620 * 97.22533 * 14 13 11 35 35 H 1.09001 * 109.88481 * 218.38817 * 14 13 11 36 36 H 0.97001 * 119.99829 * 179.97438 * 19 18 16 37 37 H 1.09006 * 110.36319 * 265.28904 * 24 15 14 38 38 H 1.08995 * 110.36350 * 142.96557 * 24 15 14 39 39 H 1.08995 * 109.47667 * 269.97531 * 26 25 2 40 40 H 1.09000 * 109.46989 * 29.98179 * 26 25 2 41 41 H 1.09002 * 109.47149 * 149.97542 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1651 1.1428 0.0000 4 7 3.4464 1.2031 -0.0005 5 6 4.2047 0.1166 0.0045 6 8 5.5547 0.2265 0.0097 7 6 3.5979 -1.1501 -0.0010 8 6 4.4079 -2.3867 -0.0012 9 8 4.7405 -2.8953 -1.0539 10 7 4.7775 -2.9502 1.1661 11 6 5.5807 -4.1754 1.1659 12 1 6.2338 -4.2120 0.2940 13 6 6.3978 -4.3049 2.4785 14 6 6.5912 -5.8297 2.6163 15 7 5.5301 -6.4771 1.8311 16 6 5.3618 -7.8272 1.6774 17 1 4.5469 -8.2050 1.0777 18 6 6.2385 -8.7105 2.2924 19 7 7.2319 -8.2500 3.0228 20 14 6.0084 -10.5525 2.0833 21 1 6.0984 -10.9021 0.6429 22 1 7.0684 -11.2720 2.8341 23 1 4.6759 -10.9473 2.6063 24 6 4.6771 -5.4316 1.2369 25 6 2.1980 -1.2001 -0.0005 26 6 1.4671 -2.5180 -0.0017 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3632 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 5.9500 0.2607 -0.8722 31 1 4.5119 -2.5446 2.0061 32 1 7.3599 -3.8010 2.3852 33 1 5.8360 -3.9067 3.3234 34 1 7.5680 -6.1162 2.2266 35 1 6.5076 -6.1208 3.6634 36 1 7.8443 -8.8672 3.4529 37 1 3.8121 -5.2413 1.8724 38 1 4.3572 -5.7259 0.2374 39 1 1.2909 -2.8367 1.0256 40 1 0.5127 -2.4037 -0.5155 41 1 2.0692 -3.2670 -0.5162 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015471444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:39 Heat of formation + Delta-G solvation = 9.631341 kcal Electronic energy + Delta-G solvation = -25168.094462 eV Core-core repulsion = 21470.852274 eV Total energy + Delta-G solvation = -3697.242188 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.77536 -39.64061 -38.08012 -37.33839 -35.22379 -34.18877 -32.99101 -31.85533 -29.33241 -28.98765 -28.34037 -27.24302 -25.08386 -24.10427 -22.98140 -21.06478 -20.49631 -20.03853 -19.25660 -18.42603 -17.78068 -16.95068 -16.39111 -16.07503 -15.22669 -14.87171 -14.63371 -14.59612 -14.20477 -14.02148 -13.75544 -13.45647 -13.30901 -13.06297 -12.93426 -12.51969 -12.49335 -12.36217 -12.24683 -11.87508 -11.49921 -11.12232 -10.99626 -10.80978 -10.70835 -10.30349 -10.19976 -10.15129 -9.98280 -9.78506 -9.76583 -9.60744 -8.95274 -8.64959 -6.90856 -5.76446 -3.10766 0.14969 0.36883 2.30382 2.78326 2.94761 3.17501 3.38459 3.42751 3.43936 3.71981 4.01581 4.16089 4.36580 4.47829 4.55293 4.87416 4.92555 5.06233 5.17174 5.21712 5.33556 5.34354 5.37629 5.51825 5.52926 5.61201 5.64917 5.69658 5.85397 6.05447 6.20485 6.35059 6.43032 6.55800 6.80470 6.96171 7.40109 7.49145 7.51612 7.75503 8.02909 8.19481 8.28022 9.15975 9.75838 10.40131 11.35279 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.003214 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.616275 B = 8710.984743 C = 9396.203247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.058 3.942 3 N -0.207 5.207 4 N -0.256 5.256 5 C 0.287 3.713 6 O -0.467 6.467 7 C -0.143 4.143 8 C 0.572 3.428 9 O -0.523 6.523 10 N -0.697 5.697 11 C 0.125 3.875 12 H 0.100 0.900 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.231 4.231 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.130 3.870 25 C -0.029 4.029 26 C -0.129 4.129 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.411 0.589 31 H 0.400 0.600 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.254 0.746 37 H 0.020 0.980 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 16.557 -4.361 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.087 4.087 3 N -0.052 5.052 4 N -0.107 5.107 5 C 0.101 3.899 6 O -0.273 6.273 7 C -0.158 4.158 8 C 0.354 3.646 9 O -0.399 6.399 10 N -0.346 5.346 11 C 0.020 3.980 12 H 0.118 0.882 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.330 5.330 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.003 3.997 25 C -0.040 4.040 26 C -0.186 4.186 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.271 0.729 31 H 0.234 0.766 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.690 17.566 -4.446 21.038 hybrid contribution 0.185 -2.201 -0.093 2.211 sum -10.504 15.365 -4.539 19.158 Atomic orbital electron populations 1.20763 0.86670 1.04491 1.04078 1.22779 0.99437 0.89234 0.97240 1.72830 1.00142 1.24361 1.07906 1.73041 0.99547 1.26402 1.11755 1.20845 0.86338 0.88122 0.94577 1.84712 1.12812 1.95167 1.34643 1.21486 0.94787 0.95593 1.03972 1.17631 0.79492 0.82546 0.84895 1.90862 1.55052 1.62990 1.30998 1.45989 1.53645 1.27396 1.07606 1.22459 0.92981 0.82441 1.00079 0.88207 1.23198 0.99149 1.01254 0.95200 1.21160 0.92800 0.84019 0.96603 1.44372 1.30424 1.01078 1.57104 1.19012 1.10542 0.79830 1.26487 0.90395 1.24812 0.97527 0.98240 0.99730 1.69935 1.17665 1.32992 1.36402 0.86167 0.77113 0.84691 0.77598 1.21080 1.21549 1.21133 1.21804 0.92979 0.88063 0.96864 1.21142 0.91590 0.98036 0.93256 1.21067 1.01023 0.92069 1.04436 0.89366 0.89610 0.89648 0.72911 0.76579 0.91396 0.91972 0.93101 0.93458 0.93600 0.96261 0.93843 0.88778 0.89209 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 9.81 36.01 0.35 -0.23 16 2 C 0.06 0.57 6.86 -82.48 -0.57 0.00 16 3 N -0.21 -2.53 11.40 33.56 0.38 -2.15 16 4 N -0.26 -3.41 11.52 30.73 0.35 -3.06 16 5 C 0.29 3.59 7.88 -16.43 -0.13 3.47 16 6 O -0.47 -5.29 13.09 -18.03 -0.24 -5.52 16 7 C -0.14 -1.76 5.69 -104.45 -0.59 -2.35 16 8 C 0.57 8.23 5.62 -12.34 -0.07 8.16 16 9 O -0.52 -9.35 16.75 5.32 0.09 -9.26 16 10 N -0.70 -9.69 5.19 -52.67 -0.27 -9.96 16 11 C 0.12 2.16 3.42 -65.78 -0.23 1.94 16 12 H 0.10 1.91 7.54 -51.93 -0.39 1.52 16 13 C -0.15 -2.60 6.60 -24.90 -0.16 -2.77 16 14 C 0.18 4.19 5.37 -3.07 -0.02 4.18 16 15 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 16 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 17 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 C 0.13 2.65 6.93 -2.52 -0.02 2.64 16 25 C -0.03 -0.29 5.96 -103.84 -0.62 -0.91 16 26 C -0.13 -1.06 9.32 36.01 0.34 -0.72 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.34 6.04 -51.93 -0.31 0.02 16 30 H 0.41 2.93 9.06 45.56 0.41 3.34 16 31 H 0.40 4.69 8.55 -40.82 -0.35 4.34 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 34 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 35 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.50 6.07 -51.93 -0.31 0.18 16 41 H 0.08 0.88 7.25 -51.93 -0.38 0.51 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -34.13 344.14 -6.09 -40.22 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.60 Total: 2.88 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.96 Total: 6.60 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.46 Total: -56.92 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.15 Total: -14.79 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.13 -6.09 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015471444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.855 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds