Wall clock time and date at job start Tue Mar 31 2020 08:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31885 * 119.93664 * 2 1 4 4 N 1.28273 * 122.62554 * 179.97438 * 3 2 1 5 5 C 1.32493 * 122.22099 * 359.69788 * 4 3 2 6 6 O 1.35443 * 120.25598 * 180.32188 * 5 4 3 7 7 C 1.40455 * 119.48817 * 0.58841 * 5 4 3 8 8 C 1.47830 * 121.17610 * 179.71371 * 7 5 4 9 9 O 1.21545 * 119.99641 * 269.71472 * 8 7 5 10 10 N 1.34776 * 120.00204 * 89.71524 * 8 7 5 11 11 C 1.46499 * 120.00077 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.88689 * 322.57390 * 11 10 8 13 13 C 1.55155 * 111.00231 * 198.65266 * 11 10 8 14 14 C 1.54330 * 102.94292 * 277.42746 * 13 11 10 15 15 N 1.47026 * 107.26840 * 337.81024 * 14 13 11 16 16 C 1.36935 * 125.64362 * 178.90400 * 15 14 13 17 17 H 1.08001 * 119.99939 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00563 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99425 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00494 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46916 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47340 * 119.99904 * 20 18 16 23 23 H 1.48502 * 109.47284 * 240.00100 * 20 18 16 24 24 C 1.47420 * 108.70428 * 358.94103 * 15 14 13 25 25 C 1.38483 * 119.93144 * 179.97438 * 2 1 3 26 26 C 1.50705 * 121.05599 * 0.03487 * 25 2 1 27 27 H 1.08997 * 109.46629 * 270.01890 * 1 2 3 28 28 H 1.09003 * 109.47062 * 30.01215 * 1 2 3 29 29 H 1.08994 * 109.47464 * 150.01530 * 1 2 3 30 30 H 0.96700 * 113.99793 * 270.26680 * 6 5 4 31 31 H 0.97002 * 119.99742 * 0.02562 * 10 8 7 32 32 H 1.08998 * 110.71769 * 159.06867 * 13 11 10 33 33 H 1.08991 * 110.72382 * 35.79264 * 13 11 10 34 34 H 1.08998 * 109.88224 * 218.39343 * 14 13 11 35 35 H 1.08998 * 109.88221 * 97.22736 * 14 13 11 36 36 H 0.97001 * 119.99700 * 179.97438 * 19 18 16 37 37 H 1.08997 * 110.36858 * 142.96748 * 24 15 14 38 38 H 1.08997 * 110.36396 * 265.17736 * 24 15 14 39 39 H 1.08998 * 109.46934 * 269.98346 * 26 25 2 40 40 H 1.08996 * 109.46998 * 29.98486 * 26 25 2 41 41 H 1.08994 * 109.47164 * 149.98360 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1652 1.1429 0.0000 4 7 3.4465 1.2031 0.0005 5 6 4.2047 0.1166 0.0069 6 8 5.5547 0.2265 0.0138 7 6 3.5979 -1.1501 0.0009 8 6 4.4078 -2.3867 0.0015 9 8 4.7412 -2.8953 -1.0509 10 7 4.7766 -2.9503 1.1689 11 6 5.5788 -4.1761 1.1694 12 1 5.2739 -4.8404 0.3608 13 6 5.4954 -4.8947 2.5420 14 6 6.5411 -4.1412 3.3908 15 7 7.4846 -3.5066 2.4586 16 6 8.5520 -2.7251 2.8123 17 1 9.1884 -2.3026 2.0489 18 6 8.8161 -2.4759 4.1521 19 7 8.0408 -2.9912 5.0825 20 14 10.2717 -1.4093 4.6345 21 1 10.9802 -0.9558 3.4107 22 1 9.7896 -0.2280 5.3944 23 1 11.2030 -2.1966 5.4820 24 6 7.0906 -3.8503 1.0802 25 6 2.1980 -1.2001 0.0005 26 6 1.4671 -2.5181 0.0003 27 1 -0.3632 0.0003 1.0277 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3634 -0.8901 -0.5136 30 1 5.9509 0.2605 -0.8677 31 1 4.5102 -2.5446 2.0088 32 1 5.7642 -5.9465 2.4435 33 1 4.5000 -4.7886 2.9730 34 1 7.0714 -4.8429 4.0345 35 1 6.0487 -3.3797 3.9954 36 1 8.2256 -2.8174 6.0188 37 1 7.2574 -3.0027 0.4155 38 1 7.6479 -4.7199 0.7321 39 1 1.2906 -2.8358 1.0279 40 1 0.5127 -2.4041 -0.5138 41 1 2.0693 -3.2674 -0.5133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015471445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:42 Heat of formation + Delta-G solvation = 10.271183 kcal Electronic energy + Delta-G solvation = -25737.354276 eV Core-core repulsion = 22040.139834 eV Total energy + Delta-G solvation = -3697.214442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61548 -39.56127 -37.85522 -37.30164 -35.10165 -33.86994 -32.85123 -31.72471 -29.32831 -28.88309 -28.20293 -27.32985 -24.95978 -24.18500 -22.83706 -21.11227 -20.18136 -19.89951 -19.04855 -18.27563 -17.68919 -16.81418 -16.28435 -15.93439 -15.12445 -14.73604 -14.63768 -14.50886 -14.04444 -13.83931 -13.66408 -13.46481 -13.31858 -13.16887 -12.91155 -12.49067 -12.29354 -12.16669 -11.99263 -11.89105 -11.36755 -10.98964 -10.92940 -10.81024 -10.60431 -10.22604 -10.16251 -10.05980 -9.99235 -9.70979 -9.61112 -9.46490 -8.89641 -8.58602 -6.84539 -5.73323 -3.05745 0.30238 0.53457 2.44056 2.96174 3.14535 3.34313 3.40559 3.46779 3.48645 3.86231 4.14062 4.29138 4.49015 4.50946 4.70401 4.96915 5.01213 5.11272 5.17336 5.25596 5.36563 5.42510 5.45752 5.47609 5.54596 5.67590 5.70845 5.74799 5.92388 6.07225 6.25794 6.38405 6.39178 6.62895 6.87209 7.23548 7.49483 7.49928 7.59855 7.77951 8.17698 8.22750 8.44715 9.20636 9.80552 10.44949 11.38959 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.004370 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.999444 B = 6405.842006 C = 7173.305451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.054 3.946 3 N -0.207 5.207 4 N -0.255 5.255 5 C 0.293 3.707 6 O -0.459 6.459 7 C -0.142 4.142 8 C 0.574 3.426 9 O -0.534 6.534 10 N -0.684 5.684 11 C 0.127 3.873 12 H 0.090 0.910 13 C -0.152 4.152 14 C 0.175 3.825 15 N -0.602 5.602 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.126 3.874 25 C -0.034 4.034 26 C -0.125 4.125 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.409 0.591 31 H 0.405 0.595 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.251 0.749 37 H 0.044 0.956 38 H 0.029 0.971 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.646 0.013 -9.819 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.091 4.091 3 N -0.053 5.053 4 N -0.107 5.107 5 C 0.107 3.893 6 O -0.264 6.264 7 C -0.157 4.157 8 C 0.357 3.643 9 O -0.411 6.411 10 N -0.332 5.332 11 C 0.022 3.978 12 H 0.108 0.892 13 C -0.191 4.191 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.001 4.001 25 C -0.045 4.045 26 C -0.182 4.182 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.269 0.731 31 H 0.239 0.761 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.261 1.312 -9.770 19.015 hybrid contribution 1.096 -0.637 0.368 1.320 sum -15.165 0.675 -9.402 17.855 Atomic orbital electron populations 1.20732 0.86838 1.04282 1.03956 1.22737 0.99311 0.89337 0.97758 1.72821 1.00301 1.24353 1.07783 1.73059 0.99421 1.26472 1.11767 1.20907 0.86627 0.88055 0.93662 1.84826 1.12353 1.95054 1.34202 1.21481 0.94699 0.95761 1.03771 1.17563 0.79390 0.82605 0.84748 1.90812 1.56257 1.62966 1.31110 1.45819 1.52317 1.27286 1.07818 1.22256 0.92354 0.84549 0.98668 0.89202 1.23232 1.00904 0.99949 0.95039 1.21187 0.88456 0.94910 0.90439 1.44457 1.31199 1.58128 0.99130 1.19091 1.02439 1.22003 0.91559 0.90464 1.24761 0.99274 1.00739 0.95630 1.69950 1.39262 1.48589 0.99446 0.86049 0.81829 0.79750 0.78198 1.20502 1.21775 1.21799 1.21916 0.90905 0.98122 0.89121 1.21071 0.91583 0.97885 0.93978 1.21014 1.00840 0.92225 1.04132 0.89489 0.89698 0.89853 0.73082 0.76060 0.90622 0.91566 0.93608 0.93634 0.93879 0.93801 0.95320 0.89035 0.89365 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.81 36.01 0.35 -0.30 16 2 C 0.05 0.60 6.86 -82.48 -0.57 0.03 16 3 N -0.21 -2.93 11.40 33.56 0.38 -2.55 16 4 N -0.26 -4.06 11.52 30.73 0.35 -3.70 16 5 C 0.29 4.55 7.88 -16.43 -0.13 4.42 16 6 O -0.46 -7.15 13.09 -18.02 -0.24 -7.39 16 7 C -0.14 -2.03 5.69 -104.45 -0.59 -2.62 16 8 C 0.57 9.11 5.62 -12.34 -0.07 9.04 16 9 O -0.53 -9.72 16.85 5.33 0.09 -9.63 16 10 N -0.68 -10.95 5.22 -52.68 -0.27 -11.23 16 11 C 0.13 2.14 3.32 -65.78 -0.22 1.92 16 12 H 0.09 1.41 7.73 -51.93 -0.40 1.01 16 13 C -0.15 -2.55 6.52 -24.89 -0.16 -2.71 16 14 C 0.17 4.00 5.36 -3.06 -0.02 3.98 16 15 N -0.60 -14.99 3.39 -170.08 -0.58 -15.57 16 16 C -0.22 -6.20 10.28 -15.06 -0.15 -6.36 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -26.79 10.31 55.49 0.57 -26.21 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.13 2.63 6.93 -2.53 -0.02 2.62 16 25 C -0.03 -0.38 5.96 -103.84 -0.62 -1.00 16 26 C -0.13 -1.00 9.32 36.01 0.34 -0.67 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.36 6.04 -51.93 -0.31 0.05 16 30 H 0.41 4.45 9.06 45.56 0.41 4.86 16 31 H 0.40 6.43 8.61 -40.82 -0.35 6.08 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 35 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.47 6.07 -51.93 -0.32 0.15 16 41 H 0.08 0.77 7.24 -51.93 -0.38 0.39 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -34.60 344.46 -6.10 -40.70 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.62 Total: 4.98 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.95 Total: 8.02 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.46 Total: -59.26 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.15 Total: -17.02 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.60 -6.10 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015471445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.967 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds