Wall clock time and date at job start Tue Mar 31 2020 08:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30654 * 128.64354 * 2 1 4 4 O 1.20836 * 109.61918 * 179.97438 * 3 2 1 5 5 N 1.20904 * 115.90917 * 359.97438 * 4 3 2 6 6 C 1.31600 * 109.18241 * 0.02562 * 5 4 3 7 7 C 1.48277 * 128.71190 * 180.02562 * 6 5 4 8 8 O 1.21503 * 119.99725 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00400 * 359.97438 * 7 6 5 10 10 C 1.46491 * 120.00302 * 180.02562 * 9 7 6 11 11 H 1.09005 * 115.55239 * 9.28899 * 10 9 7 12 12 C 1.53034 * 117.50169 * 223.60754 * 10 9 7 13 13 C 1.52819 * 117.50398 * 155.02565 * 10 9 7 14 14 C 1.53175 * 117.71247 * 359.85606 * 13 10 9 15 15 C 1.53350 * 108.76947 * 158.89525 * 14 13 10 16 16 N 1.46841 * 108.82166 * 51.30306 * 15 14 13 17 17 C 1.36934 * 120.38409 * 123.11861 * 16 15 14 18 18 H 1.08003 * 120.00351 * 331.81186 * 17 16 15 19 19 C 1.38813 * 119.99945 * 151.79982 * 17 16 15 20 20 N 1.31620 * 119.99786 * 159.30087 * 19 17 16 21 21 Si 1.86799 * 119.99902 * 339.30775 * 19 17 16 22 22 H 1.48497 * 109.47232 * 94.24655 * 21 19 17 23 23 H 1.48505 * 109.46919 * 214.24296 * 21 19 17 24 24 H 1.48491 * 109.47310 * 334.24287 * 21 19 17 25 25 C 1.46843 * 119.23234 * 303.10444 * 16 15 14 26 26 C 1.53189 * 117.70950 * 215.09724 * 13 10 9 27 27 H 1.09004 * 109.47180 * 269.99840 * 1 2 3 28 28 H 1.08997 * 109.47362 * 30.00209 * 1 2 3 29 29 H 1.09001 * 109.47210 * 150.00330 * 1 2 3 30 30 H 0.97008 * 119.99748 * 359.97438 * 9 7 6 31 31 H 1.08992 * 117.50247 * 359.97438 * 12 10 9 32 32 H 1.08999 * 117.50374 * 145.01129 * 12 10 9 33 33 H 1.09000 * 109.58806 * 278.67614 * 14 13 10 34 34 H 1.08997 * 109.59136 * 39.10123 * 14 13 10 35 35 H 1.09007 * 109.57776 * 291.50309 * 15 14 13 36 36 H 1.09000 * 109.57874 * 171.10861 * 15 14 13 37 37 H 0.96997 * 119.99832 * 180.02562 * 20 19 17 38 38 H 1.08996 * 109.57992 * 297.10446 * 25 16 15 39 39 H 1.08999 * 109.58268 * 176.69705 * 25 16 15 40 40 H 1.08992 * 109.58959 * 320.89613 * 26 13 10 41 41 H 1.09001 * 109.58858 * 81.33612 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 0.0005 5 7 3.6101 -0.5737 0.0014 6 6 2.4280 -1.1520 0.0010 7 6 2.1034 -2.5988 0.0022 8 8 0.9437 -2.9612 0.0021 9 7 3.0947 -3.5119 0.0035 10 6 2.7740 -4.9413 0.0042 11 1 1.7242 -5.1877 -0.1552 12 6 3.5776 -5.8454 0.9415 13 6 3.8188 -5.8993 -0.5668 14 6 5.1218 -5.2963 -1.1005 15 6 6.1982 -6.3883 -1.1223 16 7 5.6667 -7.5636 -1.8240 17 6 6.3180 -8.0714 -2.9163 18 1 6.9146 -7.4218 -3.5396 19 6 6.2117 -9.4212 -3.2222 20 7 6.4713 -9.8419 -4.4420 21 14 5.7001 -10.6405 -1.9027 22 1 4.2325 -10.8564 -1.9705 23 1 6.4010 -11.9311 -2.1228 24 1 6.0602 -10.1033 -0.5660 25 6 4.4287 -8.1881 -1.3408 26 6 3.3162 -7.1327 -1.3236 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 4.0206 -3.2226 0.0032 31 1 4.3452 -5.3767 1.5573 32 1 3.0566 -6.6865 1.3988 33 1 4.9632 -4.9195 -2.1109 34 1 5.4408 -4.4816 -0.4504 35 1 6.4622 -6.6614 -0.1006 36 1 7.0817 -6.0200 -1.6438 37 1 6.3967 -10.7851 -4.6559 38 1 4.5829 -8.5726 -0.3326 39 1 4.1474 -9.0044 -2.0061 40 1 2.4371 -7.5364 -0.8215 41 1 3.0604 -6.8549 -2.3461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016999316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:15 Heat of formation + Delta-G solvation = 130.571529 kcal Electronic energy + Delta-G solvation = -25012.413560 eV Core-core repulsion = 21320.415733 eV Total energy + Delta-G solvation = -3691.997828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.25044 -40.32221 -38.77179 -35.95665 -35.52754 -35.08491 -33.32700 -31.78859 -30.59259 -29.86033 -28.78239 -26.32415 -24.26610 -23.16199 -23.02775 -22.36264 -21.22912 -20.79482 -19.41815 -18.91778 -18.37930 -17.49915 -16.67898 -16.37365 -15.36547 -15.24495 -14.87894 -14.41349 -14.35251 -14.07272 -13.92871 -13.77241 -13.72999 -13.05922 -12.99494 -12.44473 -12.34486 -12.25985 -12.21753 -11.98090 -11.77949 -11.60969 -11.35798 -10.84348 -10.75540 -10.70081 -10.66253 -10.35087 -10.05424 -9.89105 -9.63878 -9.48284 -8.91313 -8.56634 -6.98505 -5.97595 -3.33854 0.38025 0.92747 2.26691 2.55807 2.98486 3.05674 3.29348 3.46397 3.49102 3.50473 3.88933 4.28160 4.43558 4.50260 4.66698 4.71362 4.81457 4.86418 5.03232 5.03799 5.17987 5.22520 5.38328 5.51925 5.59071 5.77949 5.79562 5.82805 5.98109 6.09243 6.19946 6.24894 6.29407 6.37000 6.55642 6.63173 6.64728 6.89502 7.02524 7.63793 7.95001 8.06023 8.30847 8.92377 9.69662 10.07229 11.18395 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.029642 B = 0.003011 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.370165 B = 9297.089271 C = 9680.967584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.063 3.937 3 N -0.358 5.358 4 O 0.344 5.656 5 N -0.319 5.319 6 C -0.043 4.043 7 C 0.609 3.391 8 O -0.513 6.513 9 N -0.674 5.674 10 C 0.069 3.931 11 H 0.140 0.860 12 C -0.180 4.180 13 C -0.097 4.097 14 C -0.101 4.101 15 C 0.154 3.846 16 N -0.604 5.604 17 C -0.262 4.262 18 H 0.085 0.915 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.131 3.869 26 C -0.099 4.099 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.409 0.591 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 17.694 11.715 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 N -0.084 5.084 4 O 0.118 5.882 5 N -0.039 5.039 6 C -0.208 4.208 7 C 0.391 3.609 8 O -0.387 6.387 9 N -0.324 5.324 10 C -0.036 4.036 11 H 0.157 0.843 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.140 4.140 15 C 0.027 3.973 16 N -0.327 5.327 17 C -0.390 4.390 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.713 3.287 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.005 3.995 26 C -0.138 4.138 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.246 0.754 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.076 17.970 11.586 23.636 hybrid contribution -0.404 -1.139 0.711 1.402 sum -10.480 16.831 12.296 23.331 Atomic orbital electron populations 1.20362 0.82818 1.05403 1.04792 1.26254 1.00416 0.85038 0.98586 1.75081 0.91136 1.23961 1.18190 1.85075 1.23321 1.16543 1.63221 1.75382 1.23005 0.92910 1.12564 1.26075 0.88200 0.98407 1.08166 1.16367 0.85653 0.81370 0.77468 1.90815 1.18813 1.79406 1.49637 1.45229 1.09389 1.05578 1.72174 1.22008 0.98754 0.76579 1.06285 0.84289 1.23601 1.02842 1.01654 0.93706 1.21974 0.96139 0.97213 0.94487 1.21657 0.94044 0.97959 1.00383 1.20853 0.94059 0.86945 0.95412 1.44275 1.23099 1.32155 1.33169 1.18928 1.27492 0.92122 1.00500 0.89777 1.25304 0.99005 0.96889 0.96334 1.69840 1.52085 1.15450 1.17664 0.86937 0.77032 0.80950 0.83799 1.21626 1.23174 1.19475 1.21298 0.86038 0.94521 0.97593 1.21715 0.98255 0.94080 0.99794 0.88765 0.89339 0.87863 0.75430 0.88597 0.87874 0.91130 0.93134 0.95773 0.91644 0.92745 0.95489 0.90854 0.92378 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.22 36.00 0.37 -0.14 16 2 C 0.06 0.60 7.79 -79.33 -0.62 -0.01 16 3 N -0.36 -3.58 12.22 33.76 0.41 -3.17 16 4 O 0.34 3.47 11.65 27.27 0.32 3.79 16 5 N -0.32 -3.40 12.13 33.50 0.41 -2.99 16 6 C -0.04 -0.47 7.56 -80.07 -0.61 -1.07 16 7 C 0.61 7.43 7.85 -12.13 -0.10 7.33 16 8 O -0.51 -7.19 15.52 5.36 0.08 -7.10 16 9 N -0.67 -7.85 5.34 -54.69 -0.29 -8.14 16 10 C 0.07 0.86 6.14 -68.01 -0.42 0.44 16 11 H 0.14 1.81 7.40 -51.93 -0.38 1.43 16 12 C -0.18 -2.19 9.86 -26.79 -0.26 -2.46 16 13 C -0.10 -1.40 1.94 -154.49 -0.30 -1.70 16 14 C -0.10 -1.53 5.37 -26.46 -0.14 -1.67 16 15 C 0.15 2.86 6.51 -3.68 -0.02 2.84 16 16 N -0.60 -13.85 2.71 -172.25 -0.47 -14.32 16 17 C -0.26 -7.18 10.00 -15.06 -0.15 -7.33 16 18 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 19 C 0.02 0.68 5.23 -17.43 -0.09 0.58 16 20 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 21 Si 0.88 22.01 24.40 -169.99 -4.15 17.86 16 22 H -0.29 -6.92 6.66 56.52 0.38 -6.55 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.27 -6.59 6.65 56.52 0.38 -6.21 16 25 C 0.13 2.75 4.23 -3.67 -0.02 2.73 16 26 C -0.10 -1.67 5.83 -26.45 -0.15 -1.82 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.76 7.31 -51.93 -0.38 0.38 16 30 H 0.41 4.35 6.97 -40.82 -0.28 4.06 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.62 6.75 -51.93 -0.35 0.27 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.03 0.56 7.27 -51.93 -0.38 0.18 16 39 H 0.07 1.70 4.31 -51.93 -0.22 1.48 16 40 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -30.97 336.29 -5.75 -36.72 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.40 Total: 1.37 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.51 Total: -2.28 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.84 Total: -55.43 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.40 Total: -3.32 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.15 Total: 17.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.97 -5.75 -36.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016999316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.296 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds