Wall clock time and date at job start Tue Mar 31 2020 08:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47169 * 2 1 4 4 C 1.37985 * 120.04721 * 259.18338 * 3 2 1 5 5 C 1.38305 * 120.17278 * 180.31997 * 4 3 2 6 6 C 1.38594 * 120.26540 * 359.67892 * 5 4 3 7 7 F 1.35096 * 119.95577 * 180.02562 * 6 5 4 8 8 C 1.38170 * 120.09376 * 359.97438 * 6 5 4 9 9 C 1.39554 * 120.04614 * 78.88661 * 3 2 1 10 10 C 1.47855 * 120.13376 * 359.97150 * 9 3 2 11 11 O 1.21548 * 119.99699 * 49.84471 * 10 9 3 12 12 N 1.34773 * 120.00115 * 229.84854 * 10 9 3 13 13 C 1.47026 * 125.64907 * 354.91988 * 12 10 9 14 14 C 1.54323 * 107.26996 * 178.90926 * 13 12 10 15 15 C 1.55150 * 102.94228 * 337.81036 * 14 13 12 16 16 H 1.08999 * 111.00550 * 277.42689 * 15 14 13 17 17 N 1.46504 * 111.00516 * 153.57726 * 15 14 13 18 18 C 1.36941 * 120.00286 * 154.99985 * 17 15 14 19 19 H 1.08003 * 119.99479 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99793 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99477 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00368 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46900 * 90.00021 * 22 20 18 24 24 H 1.48500 * 109.47368 * 210.00264 * 22 20 18 25 25 H 1.48503 * 109.47108 * 330.00443 * 22 20 18 26 26 C 1.47423 * 125.64974 * 174.88730 * 12 10 9 27 27 H 1.08997 * 109.47371 * 299.99706 * 1 2 3 28 28 H 1.08999 * 109.47042 * 60.00062 * 1 2 3 29 29 H 1.09002 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47545 * 239.99974 * 2 1 3 31 31 H 1.09001 * 109.47410 * 120.00614 * 2 1 3 32 32 H 1.07999 * 119.91609 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.87017 * 179.69555 * 5 4 3 34 34 H 1.08004 * 120.08880 * 180.02562 * 8 6 5 35 35 H 1.09001 * 109.87757 * 59.49678 * 13 12 10 36 36 H 1.08997 * 110.01353 * 298.40047 * 13 12 10 37 37 H 1.08995 * 110.72177 * 96.17366 * 14 13 12 38 38 H 1.09002 * 110.72010 * 219.44708 * 14 13 12 39 39 H 0.97005 * 119.99523 * 334.99991 * 17 15 14 40 40 H 0.97008 * 119.99559 * 179.97438 * 21 20 18 41 41 H 1.08996 * 110.36663 * 323.00055 * 26 12 10 42 42 H 1.09006 * 110.36422 * 85.20748 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4739 1.9975 -1.1732 5 6 2.9416 3.2990 -1.1749 6 6 2.9639 4.0349 -0.0007 7 9 3.4216 5.3059 -0.0096 8 6 2.5176 3.4707 1.1790 9 6 2.0457 2.1572 1.1854 10 6 1.5669 1.5466 2.4440 11 8 1.9791 0.4553 2.7853 12 7 0.6733 2.2001 3.2127 13 6 0.1738 3.5625 2.9763 14 6 -0.8459 3.8766 4.0912 15 6 -1.2850 2.4668 4.5677 16 1 -2.0593 2.0585 3.9182 17 7 -1.7354 2.5002 5.9614 18 6 -2.6126 1.5541 6.4203 19 1 -2.9728 0.7836 5.7547 20 6 -3.0397 1.5862 7.7407 21 7 -3.8833 0.6771 8.1817 22 14 -2.4173 2.9193 8.8917 23 1 -3.3269 4.0914 8.8292 24 1 -2.3791 2.3957 10.2808 25 1 -1.0511 3.3305 8.4799 26 6 0.0343 1.6669 4.4296 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.4587 1.4295 -2.0916 33 1 3.2907 3.7439 -2.0950 34 1 2.5345 4.0444 2.0940 35 1 -0.3136 3.6149 2.0027 36 1 0.9983 4.2744 3.0167 37 1 -0.3719 4.4278 4.9033 38 1 -1.6954 4.4307 3.6920 39 1 -1.4121 3.1925 6.5591 40 1 -4.1815 0.6993 9.1045 41 1 -0.1769 0.6040 4.3125 42 1 0.6731 1.8326 5.2972 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019089669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:51 Heat of formation + Delta-G solvation = -39.417547 kcal Electronic energy + Delta-G solvation = -25157.697493 eV Core-core repulsion = 21438.408424 eV Total energy + Delta-G solvation = -3719.289069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.16864 -40.63615 -38.79678 -37.31039 -34.47338 -33.98433 -32.16259 -31.31099 -29.99293 -29.32192 -27.93663 -25.11597 -23.84629 -23.39202 -22.37042 -21.50168 -20.39159 -19.64234 -18.10241 -17.43329 -17.15422 -16.48145 -16.09527 -15.88856 -15.83308 -15.22573 -14.61950 -14.43250 -14.12055 -13.92131 -13.71179 -13.62912 -13.26971 -13.18351 -12.79954 -12.75772 -12.59773 -12.41451 -11.90838 -11.83170 -11.71232 -11.36723 -11.23401 -11.12436 -10.96997 -10.83549 -10.52598 -10.13464 -9.83793 -9.67843 -9.41874 -9.09270 -8.84352 -8.50072 -7.43243 -5.86462 -3.25049 0.57212 0.82596 2.59060 2.96081 3.30733 3.31437 3.33552 3.40277 3.91106 4.25013 4.39590 4.50113 4.50280 4.63513 4.73835 4.86781 5.00402 5.12007 5.15832 5.25064 5.29077 5.33372 5.42282 5.54469 5.56936 5.67624 5.70696 5.74777 5.78362 5.81374 5.85042 5.92567 6.06528 6.14334 6.19320 6.25725 6.36629 6.44014 6.50231 6.68734 7.57666 7.87166 8.14648 8.31850 9.07946 9.79848 9.97241 11.31118 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.003514 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.430453 B = 7965.222429 C = 8813.557340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.041 4.041 4 C -0.095 4.095 5 C -0.134 4.134 6 C 0.088 3.912 7 F -0.138 7.138 8 C -0.123 4.123 9 C -0.089 4.089 10 C 0.573 3.427 11 O -0.529 6.529 12 N -0.606 5.606 13 C 0.101 3.899 14 C -0.145 4.145 15 C 0.178 3.822 16 H 0.078 0.922 17 N -0.734 5.734 18 C -0.255 4.255 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.928 5.928 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.082 3.918 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.579 6.828 -20.522 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.042 4.042 4 C -0.113 4.113 5 C -0.153 4.153 6 C 0.069 3.931 7 F -0.117 7.117 8 C -0.143 4.143 9 C -0.093 4.093 10 C 0.360 3.640 11 O -0.406 6.406 12 N -0.340 5.340 13 C -0.022 4.022 14 C -0.184 4.184 15 C 0.066 3.934 16 H 0.095 0.905 17 N -0.375 5.375 18 C -0.384 4.384 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.575 5.575 22 Si 0.714 3.286 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.043 4.043 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.652 6.049 -20.297 24.671 hybrid contribution 0.599 1.320 0.952 1.734 sum 13.251 7.369 -19.346 24.580 Atomic orbital electron populations 1.21711 0.94168 1.02352 1.01949 1.20813 0.96702 0.91750 1.04643 1.20016 0.96182 0.96570 0.91422 1.20886 0.98260 0.94207 0.97927 1.21277 1.01549 0.95096 0.97401 1.17483 1.00816 0.80134 0.94652 1.91515 1.86651 1.36241 1.97268 1.21307 1.00191 0.94831 0.97940 1.19642 1.01947 0.93520 0.94163 1.17758 0.78853 0.84678 0.82693 1.90774 1.56849 1.20558 1.72441 1.48474 1.41921 1.16304 1.27253 1.22147 0.97182 0.83267 0.99631 1.23000 0.98279 0.99534 0.97615 1.21274 0.92782 0.91695 0.87630 0.90452 1.42656 1.53932 1.34436 1.06522 1.19082 1.17663 1.06133 0.95568 0.88943 1.24686 0.98888 0.98159 0.96895 1.69702 1.35763 1.35716 1.16276 0.86563 0.78584 0.82237 0.81189 1.20910 1.21579 1.20269 1.23408 0.95652 1.00367 0.84847 0.92535 0.92730 0.91863 0.90734 0.88210 0.84356 0.84381 0.84049 0.91335 0.91688 0.90622 0.89755 0.80209 0.92855 0.90426 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.83 37.15 0.37 -1.16 16 2 C -0.10 -1.09 5.53 -27.89 -0.15 -1.24 16 3 C -0.04 -0.44 5.17 -104.22 -0.54 -0.98 16 4 C -0.09 -0.79 9.65 -39.65 -0.38 -1.17 16 5 C -0.13 -1.12 10.02 -39.43 -0.40 -1.51 16 6 C 0.09 0.89 7.29 -39.47 -0.29 0.60 16 7 F -0.14 -1.45 17.26 2.25 0.04 -1.41 16 8 C -0.12 -1.35 8.50 -39.11 -0.33 -1.68 16 9 C -0.09 -1.11 5.36 -104.97 -0.56 -1.67 16 10 C 0.57 8.77 5.99 -12.33 -0.07 8.70 16 11 O -0.53 -9.80 15.25 5.32 0.08 -9.72 16 12 N -0.61 -8.98 3.33 -171.63 -0.57 -9.55 16 13 C 0.10 1.20 5.71 -3.06 -0.02 1.18 16 14 C -0.15 -1.94 6.60 -24.90 -0.16 -2.10 16 15 C 0.18 3.15 3.71 -65.79 -0.24 2.91 16 16 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 17 N -0.73 -16.26 5.05 -51.35 -0.26 -16.52 16 18 C -0.25 -6.88 10.44 -15.06 -0.16 -7.04 16 19 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 21 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 22 Si 0.88 21.32 27.73 -169.99 -4.71 16.60 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.24 6.52 56.52 0.37 -5.88 16 26 C 0.08 1.44 6.58 -2.53 -0.02 1.42 16 27 H 0.06 0.71 7.27 -51.93 -0.38 0.33 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.61 7.99 -51.92 -0.42 0.20 16 31 H 0.10 1.33 6.01 -51.93 -0.31 1.01 16 32 H 0.14 0.78 8.03 -52.49 -0.42 0.36 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.14 1.43 6.21 -52.48 -0.33 1.10 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.66 6.14 -51.93 -0.32 0.34 16 37 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.36 7.89 5.63 -40.82 -0.23 7.66 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -31.68 345.81 -8.28 -39.96 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.78 Total: 6.64 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.06 Total: -3.55 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.05 Total: -53.73 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.68 -8.28 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019089669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.539 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds