Wall clock time and date at job start Tue Mar 31 2020 08:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35285 * 116.99668 * 2 1 4 4 N 1.32772 * 120.61691 * 359.72437 * 3 2 1 5 5 C 1.31722 * 120.86972 * 179.75745 * 4 3 2 6 6 C 1.50701 * 118.89893 * 180.26279 * 5 4 3 7 7 N 1.31933 * 122.19948 * 0.53304 * 5 4 3 8 8 C 1.32191 * 121.13839 * 359.73277 * 7 5 4 9 9 C 1.39802 * 118.98321 * 0.02562 * 8 7 5 10 10 C 1.47525 * 120.98096 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99720 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00491 * 0.02779 * 10 9 8 13 13 C 1.46501 * 120.00275 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.84805 * 336.19937 * 13 12 10 15 15 C 1.53780 * 113.61284 * 107.50385 * 13 12 10 16 16 C 1.53780 * 87.08170 * 89.11457 * 15 13 12 17 17 H 1.09006 * 113.69349 * 270.87275 * 16 15 13 18 18 N 1.46503 * 113.61566 * 139.98269 * 16 15 13 19 19 C 1.36936 * 120.00173 * 107.50118 * 18 16 15 20 20 H 1.07994 * 119.99951 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99922 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99804 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00043 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47151 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46739 * 119.99851 * 23 21 19 26 26 H 1.48497 * 109.47577 * 240.00265 * 23 21 19 27 27 C 1.53781 * 87.08353 * 25.43131 * 16 15 13 28 28 H 1.08996 * 109.47352 * 299.99608 * 1 2 3 29 29 H 1.09007 * 109.46995 * 59.99906 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47748 * 270.25551 * 6 5 4 32 32 H 1.09003 * 109.47241 * 30.26293 * 6 5 4 33 33 H 1.09008 * 109.46810 * 150.25706 * 6 5 4 34 34 H 1.08008 * 120.50646 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99364 * 359.97438 * 12 10 9 36 36 H 1.08995 * 113.61327 * 203.66700 * 15 13 12 37 37 H 1.09010 * 113.61266 * 334.56905 * 15 13 12 38 38 H 0.97001 * 119.99066 * 287.50482 * 18 16 15 39 39 H 0.96999 * 119.99818 * 179.97438 * 22 21 19 40 40 H 1.08994 * 113.61934 * 220.02137 * 27 16 15 41 41 H 1.09001 * 113.60979 * 89.11204 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3320 2.3266 -0.0055 5 6 1.9247 3.5029 -0.0007 6 6 1.0742 4.7470 -0.0013 7 7 3.2380 3.6284 -0.0008 8 6 4.0261 2.5671 -0.0004 9 6 3.4481 1.2942 -0.0005 10 6 4.2858 0.0798 -0.0006 11 8 3.7641 -1.0186 -0.0011 12 7 5.6292 0.1877 -0.0001 13 6 6.4610 -1.0183 0.0003 14 1 5.9446 -1.8884 0.4056 15 6 7.1601 -1.2848 -1.3432 16 6 8.3199 -0.4202 -0.8216 17 1 8.2106 0.6409 -1.0461 18 7 9.6438 -0.9419 -1.1702 19 6 10.3992 -0.3115 -2.1227 20 1 10.0192 0.5705 -2.6166 21 6 11.6538 -0.8056 -2.4525 22 7 12.1170 -1.8802 -1.8501 23 14 12.6839 0.0539 -3.7523 24 1 11.9417 1.2293 -4.2747 25 1 13.9643 0.5050 -3.1505 26 1 12.9647 -0.8890 -4.8647 27 6 7.8618 -0.8001 0.5964 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.8692 5.0467 -1.0290 32 1 0.1344 4.5449 0.5127 33 1 1.6039 5.5495 0.5123 34 1 5.1001 2.6817 0.0000 35 1 6.0453 1.0640 0.0000 36 1 7.4290 -2.3300 -1.4957 37 1 6.6423 -0.8507 -2.1986 38 1 9.9852 -1.7339 -0.7262 39 1 12.9936 -2.2256 -2.0809 40 1 7.9104 0.0250 1.3068 41 1 8.3225 -1.7129 0.9741 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020217764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:45 Heat of formation + Delta-G solvation = 14.694171 kcal Electronic energy + Delta-G solvation = -24418.766893 eV Core-core repulsion = 20721.744246 eV Total energy + Delta-G solvation = -3697.022647 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.74869 -39.77511 -38.90102 -37.84868 -34.32201 -33.82894 -33.09958 -32.39332 -30.00580 -29.26462 -27.74501 -25.13754 -24.76896 -24.30406 -23.71517 -22.26219 -21.12137 -19.10507 -18.93901 -18.05315 -17.75392 -17.05451 -16.69004 -15.76159 -15.34916 -15.08358 -14.97780 -14.78986 -14.61204 -14.52304 -13.90099 -13.66110 -13.42488 -12.98059 -12.85199 -12.66276 -12.39172 -12.12332 -11.96913 -11.86785 -11.73492 -11.64110 -10.92823 -10.79566 -10.65666 -10.34080 -10.20564 -9.95604 -9.91430 -9.75375 -9.57603 -9.41241 -8.92874 -8.79575 -6.99574 -5.81302 -3.10316 0.14070 0.75913 2.51201 2.72812 3.03591 3.40940 3.44592 3.46726 3.48034 3.48917 3.62800 4.32524 4.46036 4.56583 4.77147 4.83006 4.92249 4.95077 5.03434 5.11055 5.14509 5.19965 5.27334 5.42224 5.44853 5.49061 5.80254 5.85507 5.90026 6.11505 6.24166 6.31292 6.39211 6.47029 6.61490 6.67616 6.76227 7.06213 7.49955 7.62824 7.66747 8.21201 8.37059 9.48498 10.05721 10.40012 11.41076 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.002772 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.531079 B =10098.395239 C =10941.629397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.262 6.262 3 C 0.414 3.586 4 N -0.579 5.579 5 C 0.374 3.626 6 C -0.089 4.089 7 N -0.543 5.543 8 C 0.216 3.784 9 C -0.267 4.267 10 C 0.570 3.430 11 O -0.518 6.518 12 N -0.702 5.702 13 C 0.118 3.882 14 H 0.098 0.902 15 C -0.176 4.176 16 C 0.166 3.834 17 H 0.074 0.926 18 N -0.712 5.712 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.159 4.159 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.180 0.820 35 H 0.397 0.603 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.065 0.935 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 10.469 6.409 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.163 6.163 3 C 0.226 3.774 4 N -0.311 5.311 5 C 0.108 3.892 6 C -0.147 4.147 7 N -0.262 5.262 8 C 0.051 3.949 9 C -0.276 4.276 10 C 0.355 3.645 11 O -0.394 6.394 12 N -0.354 5.354 13 C 0.012 3.988 14 H 0.116 0.884 15 C -0.218 4.218 16 C 0.054 3.946 17 H 0.092 0.908 18 N -0.350 5.350 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.199 4.199 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.197 0.803 35 H 0.232 0.768 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.623 10.212 6.262 27.383 hybrid contribution 1.235 -0.154 -0.656 1.407 sum -23.389 10.059 5.606 26.070 Atomic orbital electron populations 1.23073 0.76840 1.03860 1.02601 1.86546 1.22912 1.22427 1.84382 1.20114 0.88316 0.85229 0.83711 1.68073 1.41103 0.98524 1.23422 1.23214 0.88252 0.92198 0.85530 1.20679 0.98338 0.91314 1.04384 1.68315 1.05392 1.33531 1.18962 1.23443 1.00825 0.85644 0.85033 1.20962 0.92423 0.96982 1.17231 1.17477 0.82050 0.87791 0.77147 1.90832 1.72808 1.26921 1.48804 1.45564 1.05106 1.09902 1.74797 1.21846 0.90340 0.87294 0.99286 0.88393 1.24318 0.99174 1.02688 0.95643 1.21634 0.85720 0.95925 0.91346 0.90839 1.42409 1.13997 1.32742 1.45845 1.19333 0.97135 1.07888 1.13209 0.91043 1.24772 0.97823 0.98046 1.00242 1.69667 1.19209 1.24012 1.45043 0.86121 0.80297 0.78628 0.81156 1.20513 1.21831 1.21833 1.23873 0.94069 1.02504 0.99449 0.91904 0.91871 0.87842 0.88976 0.89372 0.88933 0.80305 0.76798 0.89468 0.92374 0.77993 0.93466 0.91678 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.41 101.05 1.05 1.32 16 2 O -0.26 -3.43 8.73 -38.69 -0.34 -3.77 16 3 C 0.41 5.29 7.54 -16.19 -0.12 5.17 16 4 N -0.58 -6.43 9.26 -10.47 -0.10 -6.53 16 5 C 0.37 3.69 7.64 -157.14 -1.20 2.49 16 6 C -0.09 -0.51 10.31 36.01 0.37 -0.14 16 7 N -0.54 -5.68 10.31 -10.44 -0.11 -5.79 16 8 C 0.22 2.18 10.80 -16.81 -0.18 1.99 16 9 C -0.27 -3.32 5.92 -104.57 -0.62 -3.94 16 10 C 0.57 8.24 7.78 -12.47 -0.10 8.14 16 11 O -0.52 -9.32 14.92 -15.87 -0.24 -9.55 16 12 N -0.70 -9.01 5.22 -54.06 -0.28 -9.29 16 13 C 0.12 1.75 4.32 -67.12 -0.29 1.46 16 14 H 0.10 1.54 7.46 -51.93 -0.39 1.15 16 15 C -0.18 -3.06 7.68 -25.92 -0.20 -3.25 16 16 C 0.17 3.10 4.36 -67.12 -0.29 2.81 16 17 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 18 N -0.71 -17.33 5.40 -52.63 -0.28 -17.61 16 19 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C -0.16 -2.44 7.58 -25.92 -0.20 -2.63 16 28 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.12 -51.92 -0.42 0.07 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.45 8.14 -51.92 -0.42 0.02 16 34 H 0.18 1.26 6.53 -52.48 -0.34 0.91 16 35 H 0.40 4.03 6.83 -40.82 -0.28 3.75 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 37 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 38 H 0.39 10.00 7.92 -40.82 -0.32 9.67 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -34.29 351.91 -7.89 -42.18 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.52 Total: 8.92 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.02 Total: 6.16 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -0.05 Total: -66.31 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.57 Total: -13.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.29 -7.89 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020217764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.871 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds