Wall clock time and date at job start Tue Mar 31 2020 08:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46925 * 2 1 4 4 C 1.37985 * 120.04435 * 261.89387 * 3 2 1 5 5 C 1.38300 * 120.17277 * 180.25183 * 4 3 2 6 6 C 1.38591 * 120.26882 * 359.44824 * 5 4 3 7 7 F 1.35100 * 119.95577 * 180.24986 * 6 5 4 8 8 C 1.38172 * 120.09010 * 0.27514 * 6 5 4 9 9 C 1.39548 * 120.04840 * 81.59129 * 3 2 1 10 10 C 1.47847 * 120.13793 * 0.02562 * 9 3 2 11 11 O 1.21553 * 119.99569 * 354.41412 * 10 9 3 12 12 N 1.34777 * 120.00563 * 174.41829 * 10 9 3 13 13 C 1.46501 * 120.00213 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.85039 * 336.19814 * 13 12 10 15 15 C 1.53783 * 113.61043 * 107.50351 * 13 12 10 16 16 C 1.53782 * 87.07671 * 89.11914 * 15 13 12 17 17 H 1.09008 * 113.61070 * 270.87733 * 16 15 13 18 18 N 1.46505 * 113.69001 * 139.99334 * 16 15 13 19 19 C 1.36939 * 120.00022 * 107.46024 * 18 16 15 20 20 H 1.07995 * 119.99977 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99933 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99948 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00156 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47248 * 89.99544 * 23 21 19 25 25 H 1.48505 * 109.46856 * 209.99869 * 23 21 19 26 26 H 1.48500 * 109.46955 * 329.99582 * 23 21 19 27 27 C 1.53774 * 87.08451 * 25.42968 * 16 15 13 28 28 H 1.08999 * 109.47474 * 300.00359 * 1 2 3 29 29 H 1.09001 * 109.47176 * 60.00736 * 1 2 3 30 30 H 1.09005 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47042 * 239.99803 * 2 1 3 32 32 H 1.09005 * 109.46475 * 119.99126 * 2 1 3 33 33 H 1.08006 * 119.91682 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.86646 * 179.71570 * 5 4 3 35 35 H 1.08000 * 120.08833 * 179.97438 * 8 6 5 36 36 H 0.96999 * 119.99853 * 0.02562 * 12 10 9 37 37 H 1.09003 * 113.61271 * 203.66372 * 15 13 12 38 38 H 1.08999 * 113.61787 * 334.57125 * 15 13 12 39 39 H 0.96997 * 119.99479 * 287.46389 * 18 16 15 40 40 H 0.96996 * 120.00487 * 180.02562 * 22 21 19 41 41 H 1.08993 * 113.61771 * 220.01821 * 27 16 15 42 42 H 1.09001 * 113.61365 * 89.11440 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4214 2.0161 -1.1825 5 6 2.8876 3.3181 -1.1849 6 6 2.9566 4.0375 -0.0023 7 9 3.4084 5.3107 -0.0126 8 6 2.5646 3.4542 1.1873 9 6 2.0987 2.1385 1.1949 10 6 1.6773 1.5078 2.4640 11 8 1.1776 0.3998 2.4554 12 7 1.8472 2.1614 3.6304 13 6 1.4292 1.5366 4.8879 14 1 0.6556 0.7814 4.7486 15 6 2.6036 1.0645 5.7613 16 6 2.5945 2.4665 6.3932 17 1 3.2242 3.1856 5.8691 18 7 2.8204 2.4613 7.8407 19 6 4.0143 2.8991 8.3489 20 1 4.7894 3.2478 7.6827 21 6 4.2285 2.8936 9.7204 22 7 3.2843 2.4672 10.5323 23 14 5.8567 3.4915 10.4138 24 1 5.7746 4.9495 10.6829 25 1 6.1507 2.7704 11.6784 26 1 6.9391 3.2295 9.4315 27 6 1.1097 2.5476 6.0017 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 2.3659 1.4622 -2.1081 34 1 3.1952 3.7776 -2.1126 35 1 2.6187 4.0148 2.1089 36 1 2.2456 3.0458 3.6373 37 1 2.3374 0.2698 6.4583 38 1 3.5090 0.8466 5.1950 39 1 2.1243 2.1476 8.4390 40 1 3.4337 2.4637 11.4906 41 1 0.8091 3.5269 5.6294 42 1 0.4352 2.1583 6.7643 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020350277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:13 Heat of formation + Delta-G solvation = -44.023540 kcal Electronic energy + Delta-G solvation = -24502.360463 eV Core-core repulsion = 20782.871663 eV Total energy + Delta-G solvation = -3719.488800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.92854 -41.68472 -40.17016 -38.76793 -35.93280 -34.96824 -33.99476 -32.47498 -31.49136 -30.06146 -26.68989 -26.50879 -25.51594 -24.53682 -23.88088 -22.39550 -21.71171 -20.37062 -19.41271 -18.98638 -17.91987 -17.18266 -16.87497 -16.84623 -16.63744 -16.52880 -16.04894 -15.70595 -15.52732 -15.27837 -15.04354 -14.67234 -14.27949 -14.18159 -13.81745 -13.55874 -13.44406 -13.38890 -13.32309 -12.82331 -12.61449 -12.57468 -12.55607 -12.17517 -12.03458 -11.93732 -11.77467 -11.69880 -11.20852 -10.85520 -10.69179 -10.25313 -10.00146 -9.59938 -8.99893 -7.95824 -5.24373 -0.33839 0.09069 1.47404 1.48516 1.56897 1.72844 2.03968 2.55792 2.62098 3.12216 3.35678 3.55995 3.62294 3.71645 3.80422 3.83278 3.95202 4.01056 4.19380 4.30666 4.31395 4.44627 4.53719 4.61088 4.70545 4.73399 4.88547 4.90191 4.90579 4.98730 5.07704 5.10855 5.15964 5.17176 5.20872 5.25390 5.46105 5.50552 5.57892 5.70392 5.77537 6.26377 6.48427 7.15356 7.32693 8.09052 8.31615 9.27446 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.003039 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.410973 B = 9212.184618 C =10310.695810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.038 4.038 4 C -0.092 4.092 5 C -0.115 4.115 6 C 0.071 3.929 7 F -0.144 7.144 8 C -0.121 4.121 9 C -0.123 4.123 10 C 0.555 3.445 11 O -0.548 6.548 12 N -0.697 5.697 13 C 0.138 3.862 14 H 0.097 0.903 15 C -0.171 4.171 16 C 0.151 3.849 17 H 0.080 0.920 18 N -0.727 5.727 19 C -0.245 4.245 20 H 0.077 0.923 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.270 1.270 27 C -0.143 4.143 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.148 0.852 36 H 0.409 0.591 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.084 0.916 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 0.384 -28.084 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 C -0.039 4.039 4 C -0.110 4.110 5 C -0.134 4.134 6 C 0.052 3.948 7 F -0.122 7.122 8 C -0.141 4.141 9 C -0.126 4.126 10 C 0.344 3.656 11 O -0.427 6.427 12 N -0.348 5.348 13 C 0.031 3.969 14 H 0.115 0.885 15 C -0.213 4.213 16 C 0.041 3.959 17 H 0.098 0.902 18 N -0.365 5.365 19 C -0.377 4.377 20 H 0.095 0.905 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.183 4.183 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.189 0.811 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.180 -0.262 -28.037 28.348 hybrid contribution 0.886 0.808 1.419 1.858 sum -3.294 0.546 -26.617 26.826 Atomic orbital electron populations 1.21570 0.94260 1.01873 1.01107 1.20731 0.96870 0.91344 1.03617 1.20332 0.94949 0.96952 0.91712 1.21247 0.97265 0.94102 0.98378 1.21682 0.98952 0.94989 0.97793 1.17697 1.01783 0.80162 0.95155 1.91516 1.86950 1.36425 1.97357 1.21391 0.99260 0.94794 0.98620 1.19559 1.05027 0.94419 0.93591 1.18429 0.78243 0.85086 0.83872 1.90731 1.44709 1.20104 1.87195 1.45585 1.62817 1.21175 1.05197 1.21512 0.97017 0.96219 0.82109 0.88471 1.24144 0.98095 1.00488 0.98572 1.21974 0.95143 0.94874 0.83923 0.90231 1.42586 1.15735 1.76075 1.02060 1.19696 0.93425 1.33662 0.90898 0.90493 1.25561 1.01370 1.03191 0.96643 1.69809 1.34853 1.54771 1.02572 0.85171 0.79782 0.77528 0.77479 1.21280 1.22391 1.19485 1.23684 0.97936 0.99663 0.97000 0.94177 0.92075 0.92261 0.89290 0.90645 0.81108 0.81549 0.83445 0.75402 0.90923 0.92714 0.79312 0.94008 0.89708 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.42 71.98 0.68 -1.74 16 2 C -0.09 -1.61 5.32 29.85 0.16 -1.45 16 3 C -0.04 -0.68 5.17 -19.61 -0.10 -0.79 16 4 C -0.09 -1.11 9.66 22.22 0.21 -0.90 16 5 C -0.12 -1.43 10.02 22.37 0.22 -1.21 16 6 C 0.07 1.22 7.29 22.34 0.16 1.38 16 7 F -0.14 -2.75 17.26 44.97 0.78 -1.97 16 8 C -0.12 -2.22 9.51 22.58 0.21 -2.01 16 9 C -0.12 -2.57 5.87 -20.09 -0.12 -2.69 16 10 C 0.55 14.23 7.63 86.79 0.66 14.90 16 11 O -0.55 -16.66 11.17 -3.88 -0.04 -16.70 16 12 N -0.70 -16.94 5.21 -442.90 -2.31 -19.25 16 13 C 0.14 3.91 4.32 45.52 0.20 4.10 16 14 H 0.10 2.88 7.46 -2.39 -0.02 2.86 16 15 C -0.17 -5.88 7.68 31.12 0.24 -5.64 16 16 C 0.15 5.63 4.35 45.51 0.20 5.82 16 17 H 0.08 2.85 8.10 -2.38 -0.02 2.83 16 18 N -0.73 -35.94 5.40 -320.44 -1.73 -37.67 16 19 C -0.24 -13.42 9.97 84.03 0.84 -12.58 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 22 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 23 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C -0.14 -4.28 7.58 31.12 0.24 -4.04 16 28 H 0.04 0.94 6.55 -2.39 -0.02 0.93 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 1.13 8.02 -2.39 -0.02 1.11 16 32 H 0.08 1.82 5.97 -2.38 -0.01 1.80 16 33 H 0.17 0.94 8.05 -2.91 -0.02 0.92 16 34 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.15 2.33 6.44 -2.91 -0.02 2.31 16 36 H 0.41 8.30 6.77 -92.71 -0.63 7.67 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.37 19.92 7.92 -92.71 -0.73 19.19 16 40 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.09 2.78 8.12 -2.39 -0.02 2.77 16 Total: -1.00 -67.32 350.59 2.97 -64.35 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.30 Total: 32.89 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.27 Total: -10.68 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -3.76 Total: -115.75 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.04 Total: -16.70 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -67.32 2.97 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020350277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.325 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds