Wall clock time and date at job start Tue Mar 31 2020 08:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35276 * 117.00144 * 2 1 4 4 N 1.32771 * 120.61726 * 0.02562 * 3 2 1 5 5 C 1.31723 * 120.87481 * 179.97438 * 4 3 2 6 6 C 1.50699 * 118.90281 * 179.97438 * 5 4 3 7 7 N 1.31939 * 122.19700 * 0.02975 * 5 4 3 8 8 C 1.32188 * 121.13775 * 359.67307 * 7 5 4 9 9 C 1.39810 * 118.98050 * 0.57569 * 8 7 5 10 10 C 1.47531 * 120.98141 * 179.74355 * 9 8 7 11 11 O 1.21586 * 119.99937 * 179.71460 * 10 9 8 12 12 N 1.34778 * 119.99925 * 359.71421 * 10 9 8 13 13 C 1.46495 * 119.99972 * 179.97438 * 12 10 9 14 14 H 1.08994 * 112.91236 * 332.79475 * 13 12 10 15 15 C 1.53785 * 113.61198 * 104.04443 * 13 12 10 16 16 C 1.53784 * 87.08267 * 89.11701 * 15 13 12 17 17 H 1.09000 * 113.61749 * 139.98244 * 16 15 13 18 18 N 1.46502 * 113.61128 * 270.88796 * 16 15 13 19 19 C 1.36935 * 119.99629 * 183.71871 * 18 16 15 20 20 H 1.07995 * 120.00439 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00061 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00169 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99880 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46994 * 90.00681 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00359 * 23 21 19 26 26 H 1.48499 * 109.47305 * 330.00543 * 23 21 19 27 27 C 1.53777 * 87.07931 * 25.43206 * 16 15 13 28 28 H 1.08996 * 109.47357 * 300.00353 * 1 2 3 29 29 H 1.09004 * 109.47071 * 60.00239 * 1 2 3 30 30 H 1.08999 * 109.47535 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47180 * 90.00146 * 6 5 4 32 32 H 1.08995 * 109.47742 * 210.00376 * 6 5 4 33 33 H 1.09001 * 109.47507 * 330.00394 * 6 5 4 34 34 H 1.08001 * 120.50885 * 180.31794 * 8 7 5 35 35 H 0.97002 * 120.00159 * 0.02562 * 12 10 9 36 36 H 1.08998 * 113.61556 * 203.66515 * 15 13 12 37 37 H 1.08997 * 113.61678 * 334.48397 * 15 13 12 38 38 H 0.97000 * 120.00183 * 3.70740 * 18 16 15 39 39 H 0.96998 * 119.99997 * 179.97438 * 22 21 19 40 40 H 1.09001 * 113.61854 * 220.01621 * 27 16 15 41 41 H 1.09000 * 113.61407 * 89.12061 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3321 2.3266 0.0005 5 6 1.9248 3.5029 0.0010 6 6 1.0745 4.7470 0.0010 7 7 3.2383 3.6283 0.0005 8 6 4.0262 2.5669 0.0058 9 6 3.4481 1.2940 -0.0001 10 6 4.2857 0.0795 -0.0002 11 8 3.7640 -1.0188 -0.0002 12 7 5.6291 0.1874 -0.0003 13 6 6.4608 -1.0186 0.0003 14 1 5.9667 -1.8746 0.4596 15 6 7.0920 -1.3321 -1.3666 16 6 8.2758 -0.4511 -0.9340 17 1 9.2469 -0.8489 -1.2287 18 7 8.1109 0.9635 -1.2776 19 6 9.1204 1.8525 -1.0213 20 1 10.0380 1.5110 -0.5655 21 6 8.9641 3.1929 -1.3464 22 7 9.9342 4.0475 -1.0996 23 14 7.3767 3.7838 -2.1342 24 1 6.4176 4.1855 -1.0740 25 1 7.6624 4.9484 -3.0102 26 1 6.7882 2.6875 -2.9446 27 6 7.8895 -0.7814 0.5174 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.8691 5.0467 1.0287 32 1 1.6042 5.5493 -0.5125 33 1 0.1348 4.5449 -0.5132 34 1 5.1002 2.6814 0.0105 35 1 6.0453 1.0636 0.0001 36 1 7.3537 -2.3823 -1.4961 37 1 6.5309 -0.9287 -2.2095 38 1 7.2867 1.2703 -1.6869 39 1 9.8250 4.9841 -1.3272 40 1 7.9730 0.0678 1.1956 41 1 8.3693 -1.6810 0.9030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022171174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:47 Heat of formation + Delta-G solvation = -0.706718 kcal Electronic energy + Delta-G solvation = -25673.042736 eV Core-core repulsion = 21975.352257 eV Total energy + Delta-G solvation = -3697.690480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.69669 -41.13483 -39.81637 -39.28762 -35.58468 -35.11953 -34.15191 -33.68871 -32.42065 -30.13831 -28.55721 -26.69929 -26.25487 -25.27626 -24.91825 -23.76444 -21.91407 -20.75508 -19.82883 -19.54245 -18.96866 -18.71682 -17.59404 -17.05025 -16.63965 -16.26879 -16.12987 -16.01431 -15.77246 -15.63502 -15.46124 -15.27893 -14.77248 -14.37996 -13.88128 -13.59903 -13.34121 -13.32218 -13.26162 -13.11484 -12.82532 -12.75162 -12.62790 -12.56063 -12.13697 -11.93546 -11.79984 -11.52514 -11.12934 -11.05877 -10.87947 -10.71868 -10.42086 -10.03624 -9.29892 -8.01457 -5.35726 -0.81762 -0.20601 1.33874 1.37799 1.44379 1.62252 1.62814 1.95867 2.45535 2.48468 2.65929 2.75324 3.29080 3.35914 3.47748 3.52579 3.70793 3.78709 3.89918 4.01083 4.16721 4.30399 4.31485 4.34219 4.56840 4.66764 4.66983 4.77966 4.80593 4.90164 4.95653 5.03583 5.17886 5.23849 5.31495 5.47402 5.56644 5.83594 5.88376 6.23205 6.36417 6.72376 7.01730 7.07320 7.82796 8.00596 9.19766 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.005667 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.760939 B = 4939.967594 C = 6749.833061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.283 6.283 3 C 0.410 3.590 4 N -0.574 5.574 5 C 0.371 3.629 6 C -0.086 4.086 7 N -0.557 5.557 8 C 0.215 3.785 9 C -0.289 4.289 10 C 0.573 3.427 11 O -0.547 6.547 12 N -0.702 5.702 13 C 0.124 3.876 14 H 0.104 0.896 15 C -0.149 4.149 16 C 0.146 3.854 17 H 0.061 0.939 18 N -0.736 5.736 19 C -0.227 4.227 20 H 0.064 0.936 21 C -0.051 4.051 22 N -0.978 5.978 23 Si 0.923 3.077 24 H -0.251 1.251 25 H -0.301 1.301 26 H -0.264 1.264 27 C -0.160 4.160 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.402 0.598 36 H 0.126 0.874 37 H 0.056 0.944 38 H 0.361 0.639 39 H 0.257 0.743 40 H 0.059 0.941 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.454 -5.892 3.077 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.184 6.184 3 C 0.222 3.778 4 N -0.306 5.306 5 C 0.106 3.894 6 C -0.144 4.144 7 N -0.276 5.276 8 C 0.049 3.951 9 C -0.298 4.298 10 C 0.359 3.641 11 O -0.426 6.426 12 N -0.354 5.354 13 C 0.019 3.981 14 H 0.122 0.878 15 C -0.188 4.188 16 C 0.037 3.963 17 H 0.079 0.921 18 N -0.380 5.380 19 C -0.358 4.358 20 H 0.082 0.918 21 C -0.243 4.243 22 N -0.628 5.628 23 Si 0.750 3.250 24 H -0.176 1.176 25 H -0.228 1.228 26 H -0.189 1.189 27 C -0.200 4.200 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.190 0.810 35 H 0.240 0.760 36 H 0.144 0.856 37 H 0.074 0.926 38 H 0.195 0.805 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.119 -6.155 3.140 22.221 hybrid contribution 0.258 0.562 -0.592 0.856 sum -20.861 -5.594 2.547 21.748 Atomic orbital electron populations 1.23364 0.74663 1.05512 1.03333 1.86503 1.25217 1.22397 1.84256 1.20200 0.88132 0.85945 0.83541 1.68197 1.40423 0.98235 1.23725 1.24177 0.88096 0.93466 0.83614 1.20888 0.98245 0.89326 1.05932 1.68419 1.06337 1.33367 1.19495 1.23553 1.01084 0.86006 0.84453 1.20893 0.93013 0.96494 1.19394 1.17640 0.82229 0.87819 0.76366 1.90764 1.73351 1.27644 1.50837 1.45837 1.04969 1.10748 1.73821 1.21906 0.90880 0.87322 0.97950 0.87792 1.23746 0.96587 1.01785 0.96655 1.21467 0.97344 0.83094 0.94394 0.92099 1.42568 1.16800 1.04438 1.74169 1.18990 0.95835 0.88700 1.32249 0.91785 1.25312 1.00370 0.96213 1.02421 1.69846 1.34445 1.03228 1.55298 0.85940 0.81464 0.77923 0.79667 1.17598 1.22760 1.18924 1.23940 0.94239 1.02774 0.99096 0.91092 0.91234 0.85672 0.86947 0.88193 0.87452 0.80992 0.76039 0.85584 0.92559 0.80486 0.93344 0.92202 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.41 113.37 1.18 1.63 16 2 O -0.28 -8.04 8.73 -65.39 -0.57 -8.61 16 3 C 0.41 12.21 7.54 85.17 0.64 12.86 16 4 N -0.57 -14.80 9.26 -299.86 -2.78 -17.58 16 5 C 0.37 9.17 7.64 138.73 1.06 10.23 16 6 C -0.09 -1.25 10.31 71.24 0.73 -0.51 16 7 N -0.56 -16.56 10.31 -186.94 -1.93 -18.48 16 8 C 0.21 6.71 10.80 85.02 0.92 7.63 16 9 C -0.29 -9.22 5.92 -19.83 -0.12 -9.34 16 10 C 0.57 19.53 7.78 86.69 0.67 20.20 16 11 O -0.55 -20.73 14.96 16.23 0.24 -20.49 16 12 N -0.70 -22.71 4.90 -443.21 -2.17 -24.88 16 13 C 0.12 3.65 4.28 45.52 0.19 3.85 16 14 H 0.10 2.93 7.55 -2.39 -0.02 2.91 16 15 C -0.15 -4.24 7.57 31.12 0.24 -4.00 16 16 C 0.15 5.03 4.54 45.52 0.21 5.24 16 17 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 18 N -0.74 -31.75 4.22 -320.45 -1.35 -33.10 16 19 C -0.23 -12.10 10.47 84.03 0.88 -11.22 16 20 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 21 C -0.05 -2.86 5.50 84.86 0.47 -2.40 16 22 N -0.98 -60.37 13.97 21.65 0.30 -60.07 16 23 Si 0.92 42.76 27.74 68.60 1.90 44.66 16 24 H -0.25 -10.71 6.63 99.48 0.66 -10.05 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 26 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 27 C -0.16 -4.73 7.61 31.12 0.24 -4.49 16 28 H 0.07 1.13 8.12 -2.39 -0.02 1.12 16 29 H 0.07 1.13 8.12 -2.38 -0.02 1.11 16 30 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.17 5.43 6.06 -2.91 -0.02 5.41 16 35 H 0.40 13.55 5.31 -92.71 -0.49 13.05 16 36 H 0.13 2.77 8.14 -2.39 -0.02 2.76 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.36 15.30 4.83 -92.71 -0.45 14.85 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -71.26 344.34 0.99 -70.27 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.03 Total: 38.61 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 7.31 Total: 29.67 kcal Atomic # 7 Polarization: -146.18 SS G_CDS: -7.92 Total: -154.10 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.33 Total: -29.10 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.90 Total: 44.66 kcal Total: -71.26 0.99 -70.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022171174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.560 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds