Wall clock time and date at job start Tue Mar 31 2020 08:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50702 * 109.47047 * 2 1 4 4 C 1.37987 * 120.04591 * 257.91307 * 3 2 1 5 5 C 1.38297 * 120.17358 * 180.02562 * 4 3 2 6 6 C 1.38593 * 120.26833 * 0.24606 * 5 4 3 7 7 F 1.35103 * 119.95269 * 179.70646 * 6 5 4 8 8 C 1.38172 * 120.08993 * 359.44946 * 6 5 4 9 9 C 1.39553 * 120.05222 * 77.88295 * 3 2 1 10 10 C 1.47853 * 120.13013 * 0.04935 * 9 3 2 11 11 O 1.21554 * 120.00217 * 6.10951 * 10 9 3 12 12 N 1.34773 * 120.00214 * 186.11411 * 10 9 3 13 13 C 1.46501 * 120.00137 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.85051 * 49.29794 * 13 12 10 15 15 C 1.53781 * 113.61334 * 180.60467 * 13 12 10 16 16 C 1.53786 * 87.07841 * 89.11591 * 15 13 12 17 17 H 1.08998 * 113.68987 * 139.99134 * 16 15 13 18 18 N 1.46501 * 113.61368 * 270.88049 * 16 15 13 19 19 C 1.36938 * 120.00038 * 251.26657 * 18 16 15 20 20 H 1.08003 * 119.99643 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99841 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99935 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99896 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47428 * 89.99813 * 23 21 19 25 25 H 1.48501 * 109.46865 * 209.99685 * 23 21 19 26 26 H 1.48495 * 109.47290 * 329.99636 * 23 21 19 27 27 C 1.53779 * 87.08278 * 25.43174 * 16 15 13 28 28 H 1.08998 * 109.46904 * 300.00151 * 1 2 3 29 29 H 1.08993 * 109.47072 * 60.00075 * 1 2 3 30 30 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46904 * 239.99848 * 2 1 3 32 32 H 1.08997 * 109.47339 * 119.99488 * 2 1 3 33 33 H 1.08008 * 119.91391 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.86476 * 179.97438 * 5 4 3 35 35 H 1.07997 * 120.08410 * 180.29318 * 8 6 5 36 36 H 0.97001 * 119.99949 * 359.97438 * 12 10 9 37 37 H 1.09000 * 113.61294 * 203.66174 * 15 13 12 38 38 H 1.09001 * 113.61600 * 334.56796 * 15 13 12 39 39 H 0.96997 * 119.99451 * 71.26805 * 18 16 15 40 40 H 0.97000 * 120.00315 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.61413 * 220.01939 * 27 16 15 42 42 H 1.08998 * 113.69061 * 89.12346 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4985 1.9889 -1.1680 5 6 2.9606 3.2923 -1.1709 6 6 2.9636 4.0351 -0.0008 7 9 3.4219 5.3059 -0.0096 8 6 2.4935 3.4793 1.1737 9 6 2.0263 2.1643 1.1810 10 6 1.5284 1.5605 2.4355 11 8 1.2277 0.3831 2.4659 12 7 1.4078 2.3156 3.5453 13 6 0.9149 1.7172 4.7884 14 1 1.4268 0.7893 5.0435 15 6 0.8218 2.7128 5.9567 16 6 -0.6062 3.0216 5.4766 17 1 -1.3233 3.1475 6.2877 18 7 -0.6723 4.0993 4.4864 19 6 -1.1968 5.3159 4.8325 20 1 -1.5614 5.4811 5.8356 21 6 -1.2589 6.3372 3.8944 22 7 -1.7626 7.5067 4.2272 23 14 -0.6276 6.0516 2.1597 24 1 -1.7318 5.5395 1.3091 25 1 -0.1238 7.3312 1.5994 26 1 0.4747 5.0571 2.1915 27 6 -0.6179 1.6142 4.8570 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8935 -0.5137 0.8900 33 1 2.5033 1.4137 -2.0822 34 1 3.3247 3.7318 -2.0878 35 1 2.4914 4.0598 2.0844 36 1 1.6480 3.2551 3.5212 37 1 0.8598 2.2395 6.9378 38 1 1.5050 3.5573 5.8662 39 1 -0.3445 3.9509 3.5856 40 1 -1.8063 8.2203 3.5716 41 1 -1.0969 1.5717 3.8788 42 1 -0.9734 0.8395 5.5364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022364998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:17 Heat of formation + Delta-G solvation = -17.844901 kcal Electronic energy + Delta-G solvation = -25981.877948 eV Core-core repulsion = 22263.524340 eV Total energy + Delta-G solvation = -3718.353609 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.95760 -40.65272 -39.12657 -37.59397 -34.38127 -33.53428 -32.83179 -31.29503 -30.40000 -29.17205 -25.42864 -25.13376 -24.12390 -23.62058 -22.49405 -21.18224 -20.46598 -19.21495 -18.09223 -17.65462 -16.86666 -16.03941 -15.91389 -15.71335 -15.68122 -15.15672 -14.69330 -14.56411 -14.20577 -14.05952 -13.95487 -13.39184 -13.37279 -12.86199 -12.74654 -12.52298 -12.24056 -12.09843 -11.85560 -11.67304 -11.63750 -11.17003 -11.03747 -10.99790 -10.88024 -10.46769 -10.28875 -9.85827 -9.63925 -9.49621 -9.32335 -9.05886 -8.78330 -8.62513 -7.39495 -5.86852 -3.23691 0.58042 0.97998 2.74356 3.16557 3.23390 3.31948 3.39462 3.59801 4.05220 4.44140 4.47851 4.55382 4.66121 4.83469 4.92956 5.02391 5.04150 5.23828 5.30651 5.33532 5.44421 5.48523 5.55820 5.65547 5.71246 5.77845 5.86364 5.88908 6.01425 6.02470 6.04063 6.08768 6.24634 6.36395 6.45706 6.46367 6.51443 6.62767 6.65536 6.87597 7.60590 7.90873 8.27808 8.32901 9.09920 9.81939 10.01231 11.30931 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.006686 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.568033 B = 4187.079747 C = 5699.597210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.031 4.031 4 C -0.103 4.103 5 C -0.126 4.126 6 C 0.085 3.915 7 F -0.136 7.136 8 C -0.114 4.114 9 C -0.109 4.109 10 C 0.559 3.441 11 O -0.525 6.525 12 N -0.701 5.701 13 C 0.125 3.875 14 H 0.084 0.916 15 C -0.177 4.177 16 C 0.170 3.830 17 H 0.075 0.925 18 N -0.730 5.730 19 C -0.249 4.249 20 H 0.094 0.906 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.880 3.120 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.167 4.167 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.361 0.639 40 H 0.261 0.739 41 H 0.068 0.932 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.193 -13.753 -8.073 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.032 4.032 4 C -0.121 4.121 5 C -0.145 4.145 6 C 0.066 3.934 7 F -0.114 7.114 8 C -0.134 4.134 9 C -0.112 4.112 10 C 0.347 3.653 11 O -0.404 6.404 12 N -0.354 5.354 13 C 0.021 3.979 14 H 0.102 0.898 15 C -0.219 4.219 16 C 0.058 3.942 17 H 0.093 0.907 18 N -0.370 5.370 19 C -0.379 4.379 20 H 0.111 0.889 21 C -0.188 4.188 22 N -0.576 5.576 23 Si 0.710 3.290 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.205 1.205 27 C -0.207 4.207 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.241 0.759 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.195 0.805 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.854 -14.288 -7.908 19.073 hybrid contribution 0.673 0.933 -1.365 1.785 sum 10.527 -13.354 -9.273 19.368 Atomic orbital electron populations 1.21632 0.94244 1.01761 1.01804 1.20803 0.96899 0.91257 1.03772 1.20133 0.94898 0.96882 0.91291 1.20906 0.98923 0.94283 0.98028 1.21327 1.00904 0.94985 0.97303 1.17518 1.00904 0.80285 0.94742 1.91534 1.86512 1.36148 1.97214 1.21443 0.98464 0.95102 0.98370 1.19675 1.03285 0.93643 0.94605 1.18050 0.78065 0.86218 0.83018 1.90693 1.49831 1.15293 1.84541 1.45861 1.65685 1.13844 1.09984 1.21822 0.95443 0.96760 0.83924 0.89805 1.24129 1.02722 0.98548 0.96452 1.21134 0.93882 0.86823 0.92369 0.90708 1.42606 1.74143 1.10631 1.09662 1.19122 1.33128 0.86931 0.98689 0.88862 1.24669 1.00806 0.95790 0.97527 1.69684 1.50462 1.03103 1.34307 0.86687 0.78788 0.77027 0.86462 1.21071 1.21465 1.20470 1.23873 0.95280 0.99503 1.02091 0.91880 0.93603 0.92451 0.91893 0.87574 0.84325 0.84253 0.84137 0.75880 0.89260 0.90781 0.80503 0.92909 0.91351 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.41 37.16 0.35 -1.37 16 2 C -0.09 -1.07 5.35 -27.88 -0.15 -1.22 16 3 C -0.03 -0.40 5.18 -104.22 -0.54 -0.94 16 4 C -0.10 -1.11 9.65 -39.65 -0.38 -1.49 16 5 C -0.13 -1.43 10.02 -39.43 -0.40 -1.82 16 6 C 0.08 1.19 7.29 -39.47 -0.29 0.91 16 7 F -0.14 -2.05 17.26 2.25 0.04 -2.01 16 8 C -0.11 -1.70 9.00 -39.11 -0.35 -2.06 16 9 C -0.11 -1.61 5.86 -104.98 -0.62 -2.22 16 10 C 0.56 8.87 7.30 -12.33 -0.09 8.78 16 11 O -0.53 -8.78 11.82 5.32 0.06 -8.71 16 12 N -0.70 -11.03 4.18 -53.96 -0.23 -11.26 16 13 C 0.13 1.87 3.97 -67.12 -0.27 1.60 16 14 H 0.08 1.18 8.11 -51.93 -0.42 0.75 16 15 C -0.18 -2.66 7.58 -25.92 -0.20 -2.86 16 16 C 0.17 3.09 4.57 -67.12 -0.31 2.78 16 17 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 18 N -0.73 -16.41 4.92 -52.63 -0.26 -16.67 16 19 C -0.25 -6.77 10.45 -15.06 -0.16 -6.92 16 20 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 23 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.11 5.54 56.52 0.31 -5.79 16 27 C -0.17 -2.65 7.63 -25.92 -0.20 -2.85 16 28 H 0.06 0.95 6.44 -51.93 -0.33 0.62 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 32 H 0.11 1.42 5.90 -51.93 -0.31 1.11 16 33 H 0.14 1.06 8.02 -52.48 -0.42 0.63 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 2.10 6.01 -52.49 -0.32 1.78 16 36 H 0.40 6.50 5.99 -40.82 -0.24 6.25 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 39 H 0.36 8.00 4.13 -40.82 -0.17 7.83 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -30.91 342.33 -8.50 -39.41 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.65 Total: 14.42 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.68 Total: -9.53 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.29 Total: -55.74 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.06 Total: -8.71 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.91 -8.50 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022364998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.560 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds