Wall clock time and date at job start Tue Mar 31 2020 08:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50702 * 109.47047 * 2 1 4 4 C 1.37987 * 120.04591 * 257.91307 * 3 2 1 5 5 C 1.38297 * 120.17358 * 180.02562 * 4 3 2 6 6 C 1.38593 * 120.26833 * 0.24606 * 5 4 3 7 7 F 1.35103 * 119.95269 * 179.70646 * 6 5 4 8 8 C 1.38172 * 120.08993 * 359.44946 * 6 5 4 9 9 C 1.39553 * 120.05222 * 77.88295 * 3 2 1 10 10 C 1.47853 * 120.13013 * 0.04935 * 9 3 2 11 11 O 1.21554 * 120.00217 * 6.10951 * 10 9 3 12 12 N 1.34773 * 120.00214 * 186.11411 * 10 9 3 13 13 C 1.46501 * 120.00137 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.85051 * 49.29794 * 13 12 10 15 15 C 1.53781 * 113.61334 * 180.60467 * 13 12 10 16 16 C 1.53786 * 87.07841 * 89.11591 * 15 13 12 17 17 H 1.08998 * 113.68987 * 139.99134 * 16 15 13 18 18 N 1.46501 * 113.61368 * 270.88049 * 16 15 13 19 19 C 1.36938 * 120.00038 * 251.26657 * 18 16 15 20 20 H 1.08003 * 119.99643 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99841 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99935 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99896 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47428 * 89.99813 * 23 21 19 25 25 H 1.48501 * 109.46865 * 209.99685 * 23 21 19 26 26 H 1.48495 * 109.47290 * 329.99636 * 23 21 19 27 27 C 1.53779 * 87.08278 * 25.43174 * 16 15 13 28 28 H 1.08998 * 109.46904 * 300.00151 * 1 2 3 29 29 H 1.08993 * 109.47072 * 60.00075 * 1 2 3 30 30 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46904 * 239.99848 * 2 1 3 32 32 H 1.08997 * 109.47339 * 119.99488 * 2 1 3 33 33 H 1.08008 * 119.91391 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.86476 * 179.97438 * 5 4 3 35 35 H 1.07997 * 120.08410 * 180.29318 * 8 6 5 36 36 H 0.97001 * 119.99949 * 359.97438 * 12 10 9 37 37 H 1.09000 * 113.61294 * 203.66174 * 15 13 12 38 38 H 1.09001 * 113.61600 * 334.56796 * 15 13 12 39 39 H 0.96997 * 119.99451 * 71.26805 * 18 16 15 40 40 H 0.97000 * 120.00315 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.61413 * 220.01939 * 27 16 15 42 42 H 1.08998 * 113.69061 * 89.12346 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4985 1.9889 -1.1680 5 6 2.9606 3.2923 -1.1709 6 6 2.9636 4.0351 -0.0008 7 9 3.4219 5.3059 -0.0096 8 6 2.4935 3.4793 1.1737 9 6 2.0263 2.1643 1.1810 10 6 1.5284 1.5605 2.4355 11 8 1.2277 0.3831 2.4659 12 7 1.4078 2.3156 3.5453 13 6 0.9149 1.7172 4.7884 14 1 1.4268 0.7893 5.0435 15 6 0.8218 2.7128 5.9567 16 6 -0.6062 3.0216 5.4766 17 1 -1.3233 3.1475 6.2877 18 7 -0.6723 4.0993 4.4864 19 6 -1.1968 5.3159 4.8325 20 1 -1.5614 5.4811 5.8356 21 6 -1.2589 6.3372 3.8944 22 7 -1.7626 7.5067 4.2272 23 14 -0.6276 6.0516 2.1597 24 1 -1.7318 5.5395 1.3091 25 1 -0.1238 7.3312 1.5994 26 1 0.4747 5.0571 2.1915 27 6 -0.6179 1.6142 4.8570 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8935 -0.5137 0.8900 33 1 2.5033 1.4137 -2.0822 34 1 3.3247 3.7318 -2.0878 35 1 2.4914 4.0598 2.0844 36 1 1.6480 3.2551 3.5212 37 1 0.8598 2.2395 6.9378 38 1 1.5050 3.5573 5.8662 39 1 -0.3445 3.9509 3.5856 40 1 -1.8063 8.2203 3.5716 41 1 -1.0969 1.5717 3.8788 42 1 -0.9734 0.8395 5.5364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022364998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:16 Heat of formation + Delta-G solvation = -36.228685 kcal Electronic energy + Delta-G solvation = -25982.675129 eV Core-core repulsion = 22263.524340 eV Total energy + Delta-G solvation = -3719.150789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03313 -41.79685 -40.31280 -38.78992 -35.76192 -35.06057 -34.06343 -32.76000 -31.96495 -30.14179 -26.77672 -26.44272 -25.62464 -24.57069 -23.97396 -22.25706 -21.64164 -20.71565 -19.51449 -19.21564 -17.95848 -17.13990 -17.00893 -16.93526 -16.76038 -16.50553 -16.36047 -15.95115 -15.49110 -15.17942 -15.17681 -14.69596 -14.55657 -14.31429 -13.90539 -13.87140 -13.62666 -13.47658 -13.14443 -12.95502 -12.72384 -12.63593 -12.51567 -12.17688 -12.03620 -12.01138 -11.90372 -11.76295 -11.15934 -11.01076 -10.64360 -10.31214 -9.99863 -9.66695 -9.35601 -8.08137 -5.40849 -0.41421 -0.00213 1.23978 1.30407 1.37118 1.66811 2.04825 2.38969 2.55729 3.04633 3.22265 3.43081 3.51460 3.56979 3.67765 3.73738 3.82809 3.95745 4.12930 4.21421 4.30912 4.38375 4.48853 4.56187 4.65975 4.77859 4.82318 4.88392 4.92813 4.97348 5.00171 5.01730 5.08835 5.15906 5.19821 5.26399 5.39977 5.52129 5.61435 5.71079 5.77771 6.17598 6.38842 7.02211 7.08199 7.79540 7.97297 9.12950 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.006686 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.568033 B = 4187.079747 C = 5699.597210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.036 4.036 4 C -0.090 4.090 5 C -0.114 4.114 6 C 0.063 3.937 7 F -0.147 7.147 8 C -0.133 4.133 9 C -0.129 4.129 10 C 0.556 3.444 11 O -0.537 6.537 12 N -0.708 5.708 13 C 0.128 3.872 14 H 0.102 0.898 15 C -0.158 4.158 16 C 0.144 3.856 17 H 0.069 0.931 18 N -0.734 5.734 19 C -0.227 4.227 20 H 0.065 0.935 21 C -0.057 4.057 22 N -0.978 5.978 23 Si 0.938 3.062 24 H -0.289 1.289 25 H -0.297 1.297 26 H -0.245 1.245 27 C -0.155 4.155 28 H 0.030 0.970 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.172 0.828 35 H 0.130 0.870 36 H 0.400 0.600 37 H 0.124 0.876 38 H 0.062 0.938 39 H 0.364 0.636 40 H 0.257 0.743 41 H 0.046 0.954 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.684 -16.359 -10.056 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 C -0.037 4.037 4 C -0.107 4.107 5 C -0.132 4.132 6 C 0.044 3.956 7 F -0.125 7.125 8 C -0.152 4.152 9 C -0.132 4.132 10 C 0.344 3.656 11 O -0.417 6.417 12 N -0.359 5.359 13 C 0.024 3.976 14 H 0.119 0.881 15 C -0.198 4.198 16 C 0.035 3.965 17 H 0.087 0.913 18 N -0.376 5.376 19 C -0.358 4.358 20 H 0.083 0.917 21 C -0.249 4.249 22 N -0.629 5.629 23 Si 0.766 3.234 24 H -0.216 1.216 25 H -0.224 1.224 26 H -0.170 1.170 27 C -0.194 4.194 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.198 0.802 34 H 0.189 0.811 35 H 0.148 0.852 36 H 0.237 0.763 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.198 0.802 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.376 -16.968 -9.864 22.685 hybrid contribution 0.172 1.651 -0.671 1.790 sum 11.548 -15.317 -10.534 21.885 Atomic orbital electron populations 1.21606 0.94912 1.02110 1.00635 1.20779 0.96184 0.90800 1.04553 1.20426 0.94660 0.97264 0.91387 1.21350 0.96736 0.94066 0.98597 1.21717 0.99301 0.94898 0.97321 1.17821 1.01880 0.80285 0.95642 1.91504 1.86789 1.36947 1.97305 1.21426 0.99793 0.95432 0.98591 1.19698 1.04632 0.93931 0.94932 1.18299 0.77736 0.86115 0.83411 1.90683 1.50457 1.15710 1.84831 1.45958 1.65817 1.13725 1.10436 1.21877 0.94832 0.97262 0.83632 0.88061 1.23983 0.99244 0.98333 0.98243 1.21493 0.96104 0.87002 0.91906 0.91304 1.42571 1.74134 1.10146 1.10779 1.19104 1.30969 0.88492 0.97198 0.91704 1.25346 1.02288 0.95710 1.01523 1.69845 1.53199 1.04260 1.35592 0.85711 0.79009 0.77213 0.81452 1.21635 1.22373 1.16987 1.23827 0.96015 0.98269 1.01327 0.95114 0.92604 0.91393 0.88549 0.89331 0.80235 0.81100 0.85247 0.76295 0.85832 0.91906 0.80223 0.93388 0.93517 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.41 71.99 0.68 -2.43 16 2 C -0.09 -1.80 5.35 29.85 0.16 -1.64 16 3 C -0.04 -0.83 5.18 -19.61 -0.10 -0.93 16 4 C -0.09 -1.53 9.65 22.22 0.21 -1.32 16 5 C -0.11 -2.16 10.02 22.37 0.22 -1.94 16 6 C 0.06 1.66 7.29 22.34 0.16 1.82 16 7 F -0.15 -4.27 17.26 44.97 0.78 -3.49 16 8 C -0.13 -3.85 9.00 22.57 0.20 -3.64 16 9 C -0.13 -3.64 5.86 -20.10 -0.12 -3.76 16 10 C 0.56 17.17 7.30 86.79 0.63 17.81 16 11 O -0.54 -17.43 11.82 -3.88 -0.05 -17.47 16 12 N -0.71 -21.65 4.18 -442.90 -1.85 -23.50 16 13 C 0.13 3.59 3.97 45.52 0.18 3.77 16 14 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 15 C -0.16 -4.43 7.58 31.12 0.24 -4.19 16 16 C 0.14 5.15 4.57 45.52 0.21 5.36 16 17 H 0.07 2.51 8.10 -2.39 -0.02 2.49 16 18 N -0.73 -33.12 4.92 -320.44 -1.58 -34.69 16 19 C -0.23 -12.61 10.45 84.03 0.88 -11.74 16 20 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 21 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 22 N -0.98 -62.44 13.97 21.65 0.30 -62.14 16 23 Si 0.94 45.84 27.74 68.60 1.90 47.74 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 26 H -0.25 -10.46 5.54 99.48 0.55 -9.91 16 27 C -0.15 -4.64 7.63 31.12 0.24 -4.40 16 28 H 0.03 0.89 6.44 -2.39 -0.02 0.88 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.36 7.98 -2.39 -0.02 1.34 16 32 H 0.09 2.20 5.90 -2.39 -0.01 2.19 16 33 H 0.18 1.60 8.02 -2.91 -0.02 1.57 16 34 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.13 3.88 6.01 -2.91 -0.02 3.87 16 36 H 0.40 12.73 5.99 -92.71 -0.56 12.18 16 37 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.06 1.94 8.12 -2.39 -0.02 1.93 16 39 H 0.36 16.01 4.13 -92.71 -0.38 15.63 16 40 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -69.91 342.33 3.73 -66.18 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.04 Total: 37.46 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 4.26 Total: -10.08 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -3.13 Total: -120.33 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.47 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -69.91 3.73 -66.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022364998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.951 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds