Wall clock time and date at job start Tue Mar 31 2020 08:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30645 * 128.64139 * 2 1 4 4 O 1.20836 * 109.61848 * 180.23699 * 3 2 1 5 5 N 1.20902 * 115.90809 * 359.74369 * 4 3 2 6 6 C 1.31597 * 109.18155 * 359.97438 * 5 4 3 7 7 C 1.48277 * 128.71349 * 179.97438 * 6 5 4 8 8 O 1.21504 * 119.99997 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99925 * 0.03606 * 7 6 5 10 10 C 1.47062 * 125.70911 * 359.97042 * 9 7 6 11 11 C 1.54112 * 107.61540 * 177.96054 * 10 9 7 12 12 H 1.08999 * 113.38605 * 215.60631 * 11 10 9 13 13 C 1.56840 * 109.34227 * 86.58066 * 11 10 9 14 14 C 1.54070 * 105.11811 * 215.84295 * 13 11 10 15 15 C 1.53700 * 106.68411 * 23.37889 * 14 13 11 16 16 H 1.09008 * 109.90053 * 239.42107 * 15 14 13 17 17 N 1.46492 * 110.05432 * 118.25978 * 15 14 13 18 18 C 1.36940 * 120.00033 * 87.22987 * 17 15 14 19 19 H 1.07999 * 120.00186 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99980 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47321 * 59.99603 * 22 20 18 24 24 H 1.48503 * 109.47302 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46966 * 299.99713 * 22 20 18 26 26 C 1.53806 * 107.14614 * 358.79344 * 15 14 13 27 27 H 1.08995 * 113.27446 * 213.84197 * 26 15 14 28 28 C 1.47393 * 125.70770 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47505 * 270.15859 * 1 2 3 30 30 H 1.08994 * 109.47378 * 30.16679 * 1 2 3 31 31 H 1.09004 * 109.47103 * 150.16378 * 1 2 3 32 32 H 1.09002 * 109.84165 * 297.50967 * 10 9 7 33 33 H 1.09000 * 109.83908 * 58.41286 * 10 9 7 34 34 H 1.08999 * 110.19612 * 96.93076 * 13 11 10 35 35 H 1.09001 * 110.35693 * 334.83560 * 13 11 10 36 36 H 1.08996 * 110.01555 * 264.07091 * 14 13 11 37 37 H 1.09007 * 110.05267 * 142.70335 * 14 13 11 38 38 H 0.97003 * 120.00205 * 267.22621 * 17 15 14 39 39 H 0.96997 * 119.99999 * 180.02562 * 21 20 18 40 40 H 1.09001 * 110.32771 * 323.80620 * 28 9 7 41 41 H 1.08998 * 110.32979 * 85.92185 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6266 -0.0047 5 7 3.6101 -0.5737 -0.0034 6 6 2.4280 -1.1520 0.0036 7 6 2.1034 -2.5988 0.0072 8 8 0.9437 -2.9612 0.0134 9 7 3.0948 -3.5118 0.0039 10 6 4.5351 -3.2150 -0.0040 11 6 5.2884 -4.5585 0.0469 12 1 6.2083 -4.5169 0.6302 13 6 5.4685 -5.1086 -1.4107 14 6 5.3321 -6.6379 -1.2827 15 6 4.5241 -6.9033 -0.0025 16 1 5.1115 -7.5084 0.6883 17 7 3.2744 -7.5934 -0.3311 18 6 3.2482 -8.9601 -0.4137 19 1 4.1490 -9.5291 -0.2369 20 6 2.0640 -9.6140 -0.7246 21 7 0.9663 -8.9206 -0.9406 22 14 2.0281 -11.4783 -0.8366 23 1 2.4270 -12.0605 0.4700 24 1 0.6549 -11.9272 -1.1805 25 1 2.9739 -11.9293 -1.8889 26 6 4.2163 -5.5360 0.6310 27 1 4.1975 -5.5605 1.7205 28 6 2.9167 -4.9750 0.0074 29 1 -0.3634 0.0028 1.0276 30 1 -0.3634 0.8884 -0.5164 31 1 -0.3633 -0.8915 -0.5113 32 1 4.7972 -2.6781 -0.9156 33 1 4.7934 -2.6128 0.8671 34 1 6.4551 -4.8464 -1.7927 35 1 4.6917 -4.7119 -2.0644 36 1 6.3184 -7.0950 -1.2030 37 1 4.8038 -7.0397 -2.1474 38 1 2.4655 -7.0823 -0.4903 39 1 0.1387 -9.3776 -1.1575 40 1 2.0552 -5.2502 0.6158 41 1 2.7937 -5.3439 -1.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026431447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:47 Heat of formation + Delta-G solvation = 102.625611 kcal Electronic energy + Delta-G solvation = -25610.601845 eV Core-core repulsion = 21917.392191 eV Total energy + Delta-G solvation = -3693.209654 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.07369 -40.51796 -38.60681 -35.52624 -35.25781 -34.71300 -33.27933 -30.98501 -30.00519 -29.18126 -28.49358 -26.34542 -25.17823 -23.58051 -23.15685 -22.46144 -20.20857 -19.79654 -19.26144 -18.93724 -17.95666 -17.37944 -17.20664 -15.90780 -15.77263 -15.12755 -14.82149 -14.41021 -14.01775 -13.79690 -13.71562 -13.51983 -13.20049 -13.00115 -12.67106 -12.59299 -12.34506 -12.18123 -12.05054 -11.61259 -11.37346 -11.32578 -10.84006 -10.74063 -10.65353 -10.56222 -10.49960 -10.35644 -10.27362 -10.15333 -9.86459 -9.63850 -8.93147 -8.66002 -7.00034 -5.78613 -3.08764 0.59733 1.09491 2.45626 2.86526 3.16783 3.25762 3.42712 3.47428 3.48609 3.65305 4.33989 4.48802 4.54469 4.56824 4.72229 4.85732 4.94653 5.20241 5.34097 5.36649 5.40546 5.44654 5.49108 5.57964 5.70951 5.75445 5.83990 5.90225 5.91336 5.99243 6.13356 6.25873 6.36041 6.42644 6.47412 6.60652 6.75711 7.05241 7.34195 7.68490 7.85275 8.24268 8.39464 9.50340 10.06280 10.39619 11.43529 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.003619 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.504895 B = 7734.660126 C = 8789.099117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.061 3.939 3 N -0.361 5.361 4 O 0.337 5.663 5 N -0.319 5.319 6 C -0.033 4.033 7 C 0.611 3.389 8 O -0.510 6.510 9 N -0.596 5.596 10 C 0.107 3.893 11 C -0.103 4.103 12 H 0.105 0.895 13 C -0.113 4.113 14 C -0.145 4.145 15 C 0.184 3.816 16 H 0.055 0.945 17 N -0.725 5.725 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.106 4.106 27 H 0.090 0.910 28 C 0.117 3.883 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.087 0.913 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 17.941 2.181 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 N -0.087 5.087 4 O 0.113 5.887 5 N -0.040 5.040 6 C -0.199 4.199 7 C 0.395 3.605 8 O -0.383 6.383 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.122 4.122 12 H 0.123 0.877 13 C -0.151 4.151 14 C -0.186 4.186 15 C 0.073 3.927 16 H 0.073 0.927 17 N -0.368 5.368 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.126 4.126 27 H 0.108 0.892 28 C -0.004 4.004 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.222 0.778 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.670 18.271 2.169 19.570 hybrid contribution -0.874 -1.355 -0.172 1.622 sum 5.796 16.915 1.997 17.992 Atomic orbital electron populations 1.20358 0.82880 1.05343 1.04795 1.26242 1.00397 0.85147 0.98671 1.75047 0.91210 1.24057 1.18406 1.85053 1.23299 1.16885 1.63480 1.75448 1.23015 0.92563 1.13002 1.26111 0.87964 0.98430 1.07398 1.16014 0.84802 0.81016 0.78619 1.90864 1.18198 1.79123 1.50165 1.48420 1.06350 1.07724 1.70383 1.22129 0.79416 0.97906 1.02103 1.23516 0.98115 0.92541 0.98020 0.87724 1.22697 1.00835 0.97014 0.94522 1.22923 1.00211 0.93737 1.01728 1.20635 0.89214 0.89746 0.93112 0.92654 1.42695 1.06265 1.04063 1.83807 1.19196 0.94989 0.82880 1.40496 0.91165 1.24745 0.95714 0.97812 1.02409 1.69643 0.99753 1.34340 1.54131 0.86287 0.76568 0.85623 0.77785 1.21271 1.21712 1.21294 1.23364 0.93203 0.96168 0.99863 0.89155 1.22452 0.99353 0.75652 1.02961 0.88794 0.89479 0.87791 0.90952 0.91188 0.92249 0.91928 0.92858 0.90665 0.77798 0.93344 0.89452 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.22 36.00 0.37 -0.30 16 2 C 0.06 0.70 7.79 -79.33 -0.62 0.08 16 3 N -0.36 -4.10 12.22 33.75 0.41 -3.69 16 4 O 0.34 3.77 11.65 27.27 0.32 4.09 16 5 N -0.32 -3.84 10.17 33.49 0.34 -3.50 16 6 C -0.03 -0.44 7.35 -80.07 -0.59 -1.03 16 7 C 0.61 9.56 7.88 -12.13 -0.10 9.46 16 8 O -0.51 -9.29 16.21 5.36 0.09 -9.20 16 9 N -0.60 -8.93 3.33 -171.74 -0.57 -9.50 16 10 C 0.11 1.31 4.91 -3.15 -0.02 1.29 16 11 C -0.10 -1.25 4.29 -86.13 -0.37 -1.62 16 12 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.11 -1.49 5.66 -24.10 -0.14 -1.63 16 14 C -0.15 -2.37 6.53 -25.81 -0.17 -2.54 16 15 C 0.18 3.36 3.22 -67.15 -0.22 3.15 16 16 H 0.06 1.03 8.08 -51.92 -0.42 0.61 16 17 N -0.73 -17.20 4.79 -52.67 -0.25 -17.46 16 18 C -0.24 -6.55 9.95 -15.06 -0.15 -6.70 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 22 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.11 -1.62 4.05 -87.49 -0.35 -1.97 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 C 0.12 1.99 4.37 -2.67 -0.01 1.98 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.02 7.32 -51.93 -0.38 0.64 16 32 H 0.07 0.85 7.67 -51.93 -0.40 0.45 16 33 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.90 7.39 -51.93 -0.38 0.51 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.44 7.92 -51.93 -0.41 1.03 16 38 H 0.39 9.72 5.31 -40.82 -0.22 9.50 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.09 1.68 7.96 -51.93 -0.41 1.27 16 41 H 0.09 1.70 6.30 -51.93 -0.33 1.38 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -30.33 334.66 -6.81 -37.14 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.43 Total: 7.25 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.45 Total: -0.21 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.65 Total: -61.13 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: 0.40 Total: -5.11 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.33 -6.81 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026431447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.763 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds