Wall clock time and date at job start Tue Mar 31 2020 08:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30642 * 128.64445 * 2 1 4 4 O 1.20842 * 109.62244 * 180.24402 * 3 2 1 5 5 N 1.20901 * 115.90411 * 359.73735 * 4 3 2 6 6 C 1.31599 * 109.18344 * 0.02562 * 5 4 3 7 7 C 1.48282 * 128.71414 * 179.97438 * 6 5 4 8 8 O 1.21497 * 119.99731 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99882 * 0.02562 * 7 6 5 10 10 C 1.49214 * 126.05832 * 0.02562 * 9 7 6 11 11 C 1.50352 * 104.85922 * 172.93323 * 10 9 7 12 12 H 1.09001 * 110.04671 * 278.95672 * 11 10 9 13 13 C 1.50991 * 125.57383 * 144.33414 * 11 10 9 14 14 C 1.56399 * 101.59815 * 203.97654 * 13 11 10 15 15 C 1.54944 * 105.61608 * 24.46582 * 14 13 11 16 16 H 1.08996 * 109.34039 * 126.79265 * 15 14 13 17 17 N 1.46500 * 111.17291 * 249.12391 * 15 14 13 18 18 C 1.36933 * 120.00304 * 270.74135 * 17 15 14 19 19 H 1.08006 * 119.99966 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00400 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99638 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00366 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46927 * 59.99877 * 22 20 18 24 24 H 1.48501 * 109.47223 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47261 * 300.00322 * 22 20 18 26 26 C 1.50297 * 104.64655 * 8.41797 * 15 14 13 27 27 H 1.09002 * 109.99891 * 79.41323 * 26 15 14 28 28 C 1.49698 * 126.05662 * 179.97438 * 9 7 6 29 29 H 1.08997 * 109.46826 * 270.15705 * 1 2 3 30 30 H 1.08994 * 109.47041 * 30.15927 * 1 2 3 31 31 H 1.09003 * 109.47056 * 150.15771 * 1 2 3 32 32 H 1.08996 * 110.35983 * 291.77327 * 10 9 7 33 33 H 1.08991 * 110.36389 * 53.97724 * 10 9 7 34 34 H 1.08998 * 110.99959 * 322.05267 * 13 11 10 35 35 H 1.09001 * 111.00066 * 85.85657 * 13 11 10 36 36 H 1.08996 * 110.19173 * 144.09549 * 14 13 11 37 37 H 1.09004 * 110.18497 * 265.86335 * 14 13 11 38 38 H 0.97007 * 119.99963 * 90.73384 * 17 15 14 39 39 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.84799 * 36.67241 * 28 9 7 41 41 H 1.08999 * 111.01881 * 273.13216 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4653 0.6265 -0.0048 5 7 3.6102 -0.5738 -0.0035 6 6 2.4281 -1.1520 0.0026 7 6 2.1034 -2.5989 0.0058 8 8 0.9437 -2.9612 0.0111 9 7 3.0947 -3.5119 0.0029 10 6 4.5579 -3.2197 -0.0030 11 6 5.2192 -4.5583 0.1746 12 1 5.2198 -4.8378 1.2281 13 6 6.5159 -4.9895 -0.4676 14 6 6.3673 -6.5464 -0.4613 15 6 4.8426 -6.8198 -0.4252 16 1 4.5769 -7.4913 -1.2416 17 7 4.4376 -7.3900 0.8620 18 6 4.4484 -8.7472 1.0435 19 1 4.7552 -9.3974 0.2375 20 6 4.0652 -9.2875 2.2634 21 7 3.6918 -8.4951 3.2458 22 14 4.0793 -11.1390 2.5108 23 1 5.4567 -11.6551 2.3067 24 1 3.6311 -11.4575 3.8902 25 1 3.1619 -11.7761 1.5321 26 6 4.2099 -5.4713 -0.6259 27 1 4.2264 -5.2053 -1.6828 28 6 2.9229 -4.9990 0.0061 29 1 -0.3633 0.0028 1.0276 30 1 -0.3633 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5114 32 1 4.8519 -2.7746 -0.9535 33 1 4.8153 -2.5553 0.8218 34 1 6.5930 -4.6086 -1.4859 35 1 7.3713 -4.6756 0.1305 36 1 6.8142 -6.9706 -1.3604 37 1 6.8400 -6.9658 0.4269 38 1 4.1618 -6.8061 1.5859 39 1 3.4236 -8.8726 4.0982 40 1 2.0641 -5.2916 -0.5979 41 1 2.8273 -5.3793 1.0231 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026431449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:50 Heat of formation + Delta-G solvation = 113.704778 kcal Electronic energy + Delta-G solvation = -25483.248710 eV Core-core repulsion = 21790.519486 eV Total energy + Delta-G solvation = -3692.729225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.07375 -40.63905 -38.81086 -35.59585 -35.28767 -34.75731 -33.37619 -30.90497 -30.17459 -29.27679 -28.59933 -26.11787 -25.33633 -23.46218 -23.12065 -22.47717 -20.11711 -20.01508 -19.25715 -18.94289 -17.95592 -17.52402 -17.03307 -16.15211 -15.53471 -15.04487 -14.57892 -14.42504 -14.27431 -13.93123 -13.82617 -13.72635 -13.51670 -12.96572 -12.72882 -12.44725 -12.21030 -12.12297 -11.94914 -11.61625 -11.35153 -11.25908 -11.03573 -10.86893 -10.68951 -10.59816 -10.54001 -10.27962 -10.26976 -10.13669 -9.67700 -9.63450 -8.96204 -8.73848 -7.02857 -5.81437 -3.10892 0.59703 1.08844 2.38239 2.85404 3.15321 3.23424 3.41634 3.46640 3.47352 3.58900 4.10770 4.46138 4.55015 4.55622 4.86159 4.88877 5.10721 5.17660 5.28135 5.31555 5.41011 5.49914 5.56456 5.58132 5.70234 5.72441 5.77939 5.86471 5.92119 6.04070 6.17423 6.20563 6.32218 6.37618 6.47217 6.60547 6.77267 7.00158 7.28570 7.66719 7.80481 8.24194 8.36784 9.48202 10.03526 10.38039 11.40851 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.003481 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.141088 B = 8042.436158 C = 8846.811328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.361 5.361 4 O 0.338 5.662 5 N -0.317 5.317 6 C -0.034 4.034 7 C 0.615 3.385 8 O -0.517 6.517 9 N -0.604 5.604 10 C 0.123 3.877 11 C -0.129 4.129 12 H 0.091 0.909 13 C -0.095 4.095 14 C -0.146 4.146 15 C 0.195 3.805 16 H 0.055 0.945 17 N -0.718 5.718 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.121 4.121 27 H 0.077 0.923 28 C 0.134 3.866 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.083 0.917 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 16.671 -8.585 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 N -0.087 5.087 4 O 0.113 5.887 5 N -0.038 5.038 6 C -0.200 4.200 7 C 0.399 3.601 8 O -0.392 6.392 9 N -0.338 5.338 10 C 0.001 3.999 11 C -0.148 4.148 12 H 0.109 0.891 13 C -0.133 4.133 14 C -0.187 4.187 15 C 0.084 3.916 16 H 0.073 0.927 17 N -0.359 5.359 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.141 4.141 27 H 0.096 0.904 28 C 0.014 3.986 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.118 17.012 -8.567 19.048 hybrid contribution -0.560 -1.277 0.526 1.491 sum -0.442 15.735 -8.041 17.676 Atomic orbital electron populations 1.20345 0.82923 1.05195 1.04815 1.26233 1.00367 0.85175 0.98773 1.75045 0.91229 1.24075 1.18357 1.85062 1.23270 1.16886 1.63437 1.75461 1.22996 0.92542 1.12807 1.26100 0.87962 0.98409 1.07526 1.15994 0.84733 0.81029 0.78308 1.90826 1.18290 1.79246 1.50836 1.49726 1.06353 1.07470 1.70293 1.21390 0.78742 0.97523 1.02217 1.22261 0.96778 0.93597 1.02123 0.89070 1.21709 0.95126 0.97023 0.99435 1.23705 0.99815 0.93248 1.01888 1.19907 0.90886 0.90230 0.90589 0.92689 1.42415 1.79019 1.04540 1.09948 1.19199 1.37845 0.83133 0.97189 0.91126 1.24731 1.01984 0.97678 0.96264 1.69639 1.51003 1.33608 1.03772 0.86283 0.77675 0.85432 0.76861 1.21306 1.21744 1.21240 1.22507 0.94021 0.98459 0.99162 0.90445 1.21588 0.98277 0.75615 1.03122 0.88780 0.89510 0.87919 0.91003 0.90537 0.92003 0.91901 0.92625 0.90490 0.78150 0.93402 0.89867 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.22 36.01 0.37 -0.26 16 2 C 0.06 0.68 7.79 -79.33 -0.62 0.06 16 3 N -0.36 -4.10 12.22 33.76 0.41 -3.69 16 4 O 0.34 3.84 11.65 27.26 0.32 4.15 16 5 N -0.32 -3.89 10.24 33.49 0.34 -3.54 16 6 C -0.03 -0.45 7.37 -80.07 -0.59 -1.04 16 7 C 0.62 9.38 7.90 -12.13 -0.10 9.28 16 8 O -0.52 -8.93 16.29 5.37 0.09 -8.84 16 9 N -0.60 -9.00 3.43 -172.49 -0.59 -9.59 16 10 C 0.12 1.59 5.53 -3.86 -0.02 1.57 16 11 C -0.13 -1.81 2.71 -90.27 -0.25 -2.05 16 12 H 0.09 1.51 7.60 -51.93 -0.39 1.11 16 13 C -0.09 -1.22 6.72 -25.91 -0.17 -1.40 16 14 C -0.15 -2.30 6.74 -23.88 -0.16 -2.46 16 15 C 0.20 3.52 3.34 -68.25 -0.23 3.30 16 16 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 17 N -0.72 -16.58 4.81 -53.74 -0.26 -16.84 16 18 C -0.24 -6.38 9.96 -15.06 -0.15 -6.53 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 22 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.12 -1.86 2.65 -90.31 -0.24 -2.10 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 C 0.13 2.19 6.52 -3.28 -0.02 2.17 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.93 7.31 -51.93 -0.38 0.55 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.97 7.50 -51.93 -0.39 0.59 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.41 7.98 -51.93 -0.41 1.00 16 38 H 0.38 9.46 6.13 -40.82 -0.25 9.21 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 41 H 0.09 1.75 6.92 -51.93 -0.36 1.39 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -29.37 338.28 -6.70 -36.07 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.53 Total: 6.74 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.27 Total: 0.16 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.63 Total: -60.18 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.41 Total: -4.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.37 -6.70 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026431449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.774 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds