Wall clock time and date at job start Tue Mar 31 2020 08:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30642 * 128.64445 * 2 1 4 4 O 1.20842 * 109.62244 * 180.24402 * 3 2 1 5 5 N 1.20901 * 115.90411 * 359.73735 * 4 3 2 6 6 C 1.31599 * 109.18344 * 0.02562 * 5 4 3 7 7 C 1.48282 * 128.71414 * 179.97438 * 6 5 4 8 8 O 1.21497 * 119.99731 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99882 * 0.02562 * 7 6 5 10 10 C 1.49214 * 126.05832 * 0.02562 * 9 7 6 11 11 C 1.50352 * 104.85922 * 172.93323 * 10 9 7 12 12 H 1.09001 * 110.04671 * 278.95672 * 11 10 9 13 13 C 1.50991 * 125.57383 * 144.33414 * 11 10 9 14 14 C 1.56399 * 101.59815 * 203.97654 * 13 11 10 15 15 C 1.54944 * 105.61608 * 24.46582 * 14 13 11 16 16 H 1.08996 * 109.34039 * 126.79265 * 15 14 13 17 17 N 1.46500 * 111.17291 * 249.12391 * 15 14 13 18 18 C 1.36933 * 120.00304 * 270.74135 * 17 15 14 19 19 H 1.08006 * 119.99966 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00400 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99638 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00366 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46927 * 59.99877 * 22 20 18 24 24 H 1.48501 * 109.47223 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47261 * 300.00322 * 22 20 18 26 26 C 1.50297 * 104.64655 * 8.41797 * 15 14 13 27 27 H 1.09002 * 109.99891 * 79.41323 * 26 15 14 28 28 C 1.49698 * 126.05662 * 179.97438 * 9 7 6 29 29 H 1.08997 * 109.46826 * 270.15705 * 1 2 3 30 30 H 1.08994 * 109.47041 * 30.15927 * 1 2 3 31 31 H 1.09003 * 109.47056 * 150.15771 * 1 2 3 32 32 H 1.08996 * 110.35983 * 291.77327 * 10 9 7 33 33 H 1.08991 * 110.36389 * 53.97724 * 10 9 7 34 34 H 1.08998 * 110.99959 * 322.05267 * 13 11 10 35 35 H 1.09001 * 111.00066 * 85.85657 * 13 11 10 36 36 H 1.08996 * 110.19173 * 144.09549 * 14 13 11 37 37 H 1.09004 * 110.18497 * 265.86335 * 14 13 11 38 38 H 0.97007 * 119.99963 * 90.73384 * 17 15 14 39 39 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.84799 * 36.67241 * 28 9 7 41 41 H 1.08999 * 111.01881 * 273.13216 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4653 0.6265 -0.0048 5 7 3.6102 -0.5738 -0.0035 6 6 2.4281 -1.1520 0.0026 7 6 2.1034 -2.5989 0.0058 8 8 0.9437 -2.9612 0.0111 9 7 3.0947 -3.5119 0.0029 10 6 4.5579 -3.2197 -0.0030 11 6 5.2192 -4.5583 0.1746 12 1 5.2198 -4.8378 1.2281 13 6 6.5159 -4.9895 -0.4676 14 6 6.3673 -6.5464 -0.4613 15 6 4.8426 -6.8198 -0.4252 16 1 4.5769 -7.4913 -1.2416 17 7 4.4376 -7.3900 0.8620 18 6 4.4484 -8.7472 1.0435 19 1 4.7552 -9.3974 0.2375 20 6 4.0652 -9.2875 2.2634 21 7 3.6918 -8.4951 3.2458 22 14 4.0793 -11.1390 2.5108 23 1 5.4567 -11.6551 2.3067 24 1 3.6311 -11.4575 3.8902 25 1 3.1619 -11.7761 1.5321 26 6 4.2099 -5.4713 -0.6259 27 1 4.2264 -5.2053 -1.6828 28 6 2.9229 -4.9990 0.0061 29 1 -0.3633 0.0028 1.0276 30 1 -0.3633 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5114 32 1 4.8519 -2.7746 -0.9535 33 1 4.8153 -2.5553 0.8218 34 1 6.5930 -4.6086 -1.4859 35 1 7.3713 -4.6756 0.1305 36 1 6.8142 -6.9706 -1.3604 37 1 6.8400 -6.9658 0.4269 38 1 4.1618 -6.8061 1.5859 39 1 3.4236 -8.8726 4.0982 40 1 2.0641 -5.2916 -0.5979 41 1 2.8273 -5.3793 1.0231 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026431449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:49 Heat of formation + Delta-G solvation = 95.451261 kcal Electronic energy + Delta-G solvation = -25484.040242 eV Core-core repulsion = 21790.519486 eV Total energy + Delta-G solvation = -3693.520757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.01253 -41.88473 -40.06357 -36.89098 -36.28364 -35.80640 -35.06189 -32.61399 -31.27562 -30.26384 -29.99791 -27.35708 -26.62930 -25.19971 -24.36402 -23.44796 -21.21928 -21.18651 -20.35303 -20.18584 -19.42021 -18.97387 -18.14349 -17.50490 -16.83685 -16.58089 -15.99383 -15.81788 -15.35878 -15.21275 -15.02138 -14.76517 -14.48726 -14.42762 -13.96125 -13.75234 -13.31784 -13.20821 -13.08704 -12.94911 -12.86058 -12.65327 -12.40983 -12.32016 -12.24884 -12.09564 -11.91677 -11.54946 -11.47681 -11.42405 -11.39336 -10.96511 -10.87955 -9.97995 -8.97267 -7.91707 -5.19024 -0.42027 0.19354 1.23879 1.48803 1.50635 1.56500 1.69816 2.18053 2.33160 2.58277 2.61682 2.91563 3.42520 3.46153 3.58347 3.70693 3.84354 3.99597 4.04331 4.18931 4.23879 4.38603 4.43333 4.52632 4.56899 4.61883 4.67883 4.68492 4.82354 4.87802 4.93070 5.00560 5.06459 5.12828 5.20933 5.35448 5.44081 5.54864 5.67384 6.10729 6.30682 6.60870 7.31020 7.37217 8.13898 8.35738 9.31420 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.003481 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.141088 B = 8042.436158 C = 8846.811328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.067 3.933 3 N -0.362 5.362 4 O 0.350 5.650 5 N -0.313 5.313 6 C -0.054 4.054 7 C 0.614 3.386 8 O -0.544 6.544 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.116 4.116 12 H 0.059 0.941 13 C -0.081 4.081 14 C -0.139 4.139 15 C 0.185 3.815 16 H 0.052 0.948 17 N -0.729 5.729 18 C -0.235 4.235 19 H 0.077 0.923 20 C -0.074 4.074 21 N -0.970 5.970 22 Si 0.967 3.033 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.280 1.280 26 C -0.118 4.118 27 H 0.105 0.895 28 C 0.138 3.862 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.373 0.627 39 H 0.248 0.752 40 H 0.077 0.923 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 18.115 -10.494 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 N -0.089 5.089 4 O 0.123 5.877 5 N -0.031 5.031 6 C -0.218 4.218 7 C 0.400 3.600 8 O -0.421 6.421 9 N -0.339 5.339 10 C 0.009 3.991 11 C -0.135 4.135 12 H 0.077 0.923 13 C -0.119 4.119 14 C -0.180 4.180 15 C 0.075 3.925 16 H 0.070 0.930 17 N -0.370 5.370 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.797 3.203 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.206 1.206 26 C -0.138 4.138 27 H 0.123 0.877 28 C 0.017 3.983 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.205 0.795 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.122 18.449 -10.534 21.274 hybrid contribution -0.857 -1.661 1.063 2.151 sum 0.265 16.788 -9.470 19.277 Atomic orbital electron populations 1.20496 0.81113 1.05971 1.05738 1.26625 1.01399 0.84302 0.97510 1.75078 0.91084 1.23866 1.18869 1.85057 1.23430 1.16388 1.62831 1.75427 1.22680 0.92855 1.12144 1.25807 0.88941 0.97565 1.09487 1.16222 0.84342 0.81892 0.77584 1.90805 1.19348 1.79960 1.51993 1.49746 1.07336 1.06662 1.70188 1.21443 0.77221 0.96833 1.03604 1.22174 0.97292 0.93826 1.00182 0.92266 1.21671 0.94564 0.94335 1.01358 1.23511 0.97179 0.95798 1.01468 1.20197 0.92870 0.91367 0.88018 0.92982 1.42579 1.79300 1.03532 1.11543 1.19604 1.35408 0.84761 0.96936 0.90474 1.25465 1.03213 1.01523 0.96457 1.69803 1.53297 1.35043 1.03978 0.85300 0.77873 0.80985 0.76135 1.20472 1.22707 1.20588 1.22375 0.93615 0.97104 1.00675 0.87735 1.21336 0.98873 0.76986 1.01091 0.87684 0.87066 0.88718 0.88638 0.90143 0.88812 0.90674 0.90455 0.93515 0.79456 0.94296 0.90500 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.22 71.24 0.73 -0.41 16 2 C 0.07 1.40 7.79 45.18 0.35 1.76 16 3 N -0.36 -7.45 12.22 -51.78 -0.63 -8.08 16 4 O 0.35 7.19 11.65 140.85 1.64 8.83 16 5 N -0.31 -7.03 10.24 -52.05 -0.53 -7.56 16 6 C -0.05 -1.33 7.37 44.30 0.33 -1.00 16 7 C 0.61 18.46 7.90 86.92 0.69 19.15 16 8 O -0.54 -18.96 16.29 -3.70 -0.06 -19.02 16 9 N -0.61 -17.72 3.43 -817.93 -2.80 -20.52 16 10 C 0.13 3.11 5.53 85.00 0.47 3.58 16 11 C -0.12 -3.08 2.71 -10.56 -0.03 -3.11 16 12 H 0.06 1.98 7.60 -2.39 -0.02 1.97 16 13 C -0.08 -1.85 6.72 31.12 0.21 -1.64 16 14 C -0.14 -4.16 6.74 32.44 0.22 -3.94 16 15 C 0.18 6.57 3.34 44.78 0.15 6.72 16 16 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 17 N -0.73 -34.51 4.81 -323.93 -1.56 -36.07 16 18 C -0.24 -12.54 9.96 84.03 0.84 -11.70 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 21 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 22 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 C -0.12 -3.48 2.65 -10.59 -0.03 -3.51 16 27 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 28 C 0.14 4.60 6.52 85.09 0.56 5.16 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.63 7.31 -2.39 -0.02 1.61 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.90 7.50 -2.39 -0.02 1.89 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.69 7.98 -2.39 -0.02 1.67 16 38 H 0.37 19.23 6.13 -92.70 -0.57 18.67 16 39 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 40 H 0.08 2.62 8.09 -2.39 -0.02 2.60 16 41 H 0.06 2.34 6.92 -2.39 -0.02 2.33 16 Total: -1.00 -64.91 338.28 3.80 -61.11 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.49 Total: 24.78 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.94 Total: 7.31 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -5.24 Total: -130.69 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 1.58 Total: -10.19 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -64.91 3.80 -61.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026431449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.561 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds