Wall clock time and date at job start Tue Mar 31 2020 08:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30643 * 128.64013 * 2 1 4 4 O 1.20844 * 109.61453 * 180.29958 * 3 2 1 5 5 N 1.20897 * 115.91251 * 359.69339 * 4 3 2 6 6 C 1.31604 * 109.17639 * 0.02562 * 5 4 3 7 7 C 1.48285 * 128.71209 * 180.02562 * 6 5 4 8 8 O 1.21498 * 119.99684 * 180.02562 * 7 6 5 9 9 N 1.34770 * 119.99714 * 0.02562 * 7 6 5 10 10 C 1.47213 * 126.70482 * 0.02620 * 9 7 6 11 11 C 1.53785 * 106.37985 * 148.68537 * 10 9 7 12 12 H 1.09004 * 111.70527 * 256.37544 * 11 10 9 13 13 C 1.54322 * 109.05904 * 132.42775 * 11 10 9 14 14 C 1.55059 * 103.93433 * 221.16420 * 13 11 10 15 15 C 1.55060 * 102.10843 * 40.06038 * 14 13 11 16 16 H 1.08999 * 110.53343 * 78.69351 * 15 14 13 17 17 N 1.46499 * 110.53384 * 201.33176 * 15 14 13 18 18 C 1.36932 * 119.99549 * 273.54511 * 17 15 14 19 19 H 1.08003 * 120.00354 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00011 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00154 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99635 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99668 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99848 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99841 * 22 20 18 26 26 C 1.54323 * 103.93523 * 319.94180 * 15 14 13 27 27 H 1.08998 * 111.69160 * 262.79208 * 26 15 14 28 28 C 1.47218 * 126.70190 * 179.97438 * 9 7 6 29 29 H 1.08999 * 109.46879 * 270.16118 * 1 2 3 30 30 H 1.08995 * 109.46924 * 30.16341 * 1 2 3 31 31 H 1.08996 * 109.46872 * 150.16394 * 1 2 3 32 32 H 1.08997 * 110.07359 * 29.45961 * 10 9 7 33 33 H 1.08993 * 110.12038 * 267.94062 * 10 9 7 34 34 H 1.09001 * 110.53300 * 102.55766 * 13 11 10 35 35 H 1.08996 * 110.65621 * 339.83654 * 13 11 10 36 36 H 1.08997 * 110.90378 * 281.86150 * 14 13 11 37 37 H 1.09000 * 110.93051 * 158.27479 * 14 13 11 38 38 H 0.96993 * 120.00302 * 93.54475 * 17 15 14 39 39 H 0.96998 * 119.99442 * 179.97438 * 21 20 18 40 40 H 1.09003 * 110.07167 * 330.54869 * 28 9 7 41 41 H 1.09005 * 110.07355 * 92.02587 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4653 0.6265 -0.0060 5 7 3.6102 -0.5737 -0.0046 6 6 2.4281 -1.1520 0.0027 7 6 2.1034 -2.5988 0.0075 8 8 0.9437 -2.9611 0.0138 9 7 3.0947 -3.5118 0.0048 10 6 4.5414 -3.2398 -0.0021 11 6 5.2040 -4.3970 0.7640 12 1 5.5011 -4.0972 1.7691 13 6 6.4039 -4.9206 -0.0531 14 6 6.3116 -6.4615 0.0937 15 6 4.7843 -6.7074 -0.0123 16 1 4.4625 -6.6711 -1.0531 17 7 4.4280 -7.9946 0.5898 18 6 4.4903 -9.1404 -0.1573 19 1 4.8024 -9.0954 -1.1903 20 6 4.1533 -10.3602 0.4132 21 7 4.2136 -11.4617 -0.3047 22 14 3.6141 -10.4383 2.2000 23 1 4.8023 -10.6427 3.0672 24 1 2.6679 -11.5681 2.3827 25 1 2.9437 -9.1662 2.5708 26 6 4.1640 -5.5443 0.7901 27 1 3.9178 -5.8439 1.8088 28 6 2.9423 -4.9761 0.0094 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 4.7466 -2.2937 0.4987 33 1 4.9122 -3.2086 -1.0266 34 1 7.3408 -4.5523 0.3646 35 1 6.3125 -4.6301 -1.0996 36 1 6.6908 -6.7832 1.0636 37 1 6.8432 -6.9623 -0.7155 38 1 4.1481 -8.0351 1.5175 39 1 3.9785 -12.3140 0.0942 40 1 2.0194 -5.2546 0.5182 41 1 2.9344 -5.3546 -1.0128 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026431450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:52 Heat of formation + Delta-G solvation = 80.578999 kcal Electronic energy + Delta-G solvation = -25274.778800 eV Core-core repulsion = 21580.613134 eV Total energy + Delta-G solvation = -3694.165666 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.02311 -41.62228 -39.87603 -36.98522 -36.30036 -35.85622 -35.06890 -33.12452 -31.29849 -30.42502 -30.02929 -27.40836 -26.56826 -24.72195 -24.26309 -23.47801 -21.79543 -21.09310 -20.71709 -20.19871 -19.50790 -18.83654 -18.39964 -17.32925 -17.05694 -16.79281 -16.08015 -15.61776 -15.42417 -15.13106 -14.90664 -14.68316 -14.48190 -14.38599 -14.13129 -13.97945 -13.64405 -13.36105 -13.05224 -13.02849 -12.91906 -12.56021 -12.33579 -12.31423 -12.20191 -11.97948 -11.81241 -11.65065 -11.54542 -11.46633 -11.42176 -11.41164 -10.91728 -10.00902 -9.26745 -8.00743 -5.33407 -0.44971 0.18599 1.28033 1.38548 1.41493 1.48678 1.65851 2.19295 2.32075 2.49596 2.64737 3.21404 3.32204 3.37032 3.53049 3.60539 3.62462 3.81997 4.03499 4.11691 4.25014 4.37405 4.43660 4.51554 4.56329 4.59312 4.65742 4.68680 4.77325 4.84987 4.96937 4.97342 5.01758 5.06484 5.22266 5.35785 5.42510 5.54633 5.80125 6.13148 6.23907 6.59663 7.10117 7.29791 7.86905 8.04588 9.20968 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.003330 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.710371 B = 8405.616214 C = 9142.677289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.067 3.933 3 N -0.362 5.362 4 O 0.349 5.651 5 N -0.313 5.313 6 C -0.052 4.052 7 C 0.617 3.383 8 O -0.542 6.542 9 N -0.598 5.598 10 C 0.101 3.899 11 C -0.090 4.090 12 H 0.106 0.894 13 C -0.103 4.103 14 C -0.139 4.139 15 C 0.179 3.821 16 H 0.052 0.948 17 N -0.749 5.749 18 C -0.224 4.224 19 H 0.057 0.943 20 C -0.065 4.065 21 N -0.986 5.986 22 Si 0.952 3.048 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.251 1.251 26 C -0.099 4.099 27 H 0.091 0.909 28 C 0.118 3.882 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.365 0.635 39 H 0.256 0.744 40 H 0.071 0.929 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 27.411 2.937 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.088 5.088 4 O 0.122 5.878 5 N -0.032 5.032 6 C -0.216 4.216 7 C 0.402 3.598 8 O -0.418 6.418 9 N -0.330 5.330 10 C -0.021 4.021 11 C -0.109 4.109 12 H 0.125 0.875 13 C -0.141 4.141 14 C -0.179 4.179 15 C 0.070 3.930 16 H 0.070 0.930 17 N -0.391 5.391 18 C -0.355 4.355 19 H 0.075 0.925 20 C -0.257 4.257 21 N -0.637 5.637 22 Si 0.780 3.220 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.176 1.176 26 C -0.120 4.120 27 H 0.109 0.891 28 C -0.004 4.004 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.198 0.802 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.822 27.828 2.737 27.975 hybrid contribution -0.966 -1.595 0.750 2.010 sum -1.787 26.233 3.486 26.524 Atomic orbital electron populations 1.20498 0.81163 1.05902 1.05817 1.26624 1.01385 0.84333 0.97549 1.75097 0.91097 1.23884 1.18741 1.85064 1.23420 1.16472 1.62808 1.75392 1.22603 0.92883 1.12358 1.25800 0.88909 0.97529 1.09371 1.16193 0.84256 0.81780 0.77529 1.90818 1.19348 1.79908 1.51766 1.48421 1.07674 1.06851 1.70019 1.22718 0.77373 0.99948 1.02077 1.22573 0.94880 0.92716 1.00736 0.87541 1.22453 0.97674 0.93810 1.00205 1.23112 0.97432 0.96170 1.01190 1.21447 0.93452 0.82810 0.95259 0.92967 1.42799 1.81754 1.03284 1.11289 1.19007 1.35974 0.85543 0.94977 0.92465 1.25473 1.02871 0.95032 1.02284 1.69883 1.57297 0.98529 1.37959 0.85447 0.78013 0.77658 0.80878 1.20511 1.22717 1.17574 1.23117 0.94213 0.95176 0.99448 0.89093 1.22506 0.99451 0.77490 1.00997 0.87461 0.87287 0.88753 0.88266 0.89473 0.89309 0.90399 0.92053 0.93142 0.80160 0.93485 0.91070 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.22 71.24 0.73 -0.23 16 2 C 0.07 1.20 7.79 45.18 0.35 1.55 16 3 N -0.36 -6.51 12.22 -51.81 -0.63 -7.14 16 4 O 0.35 6.18 11.65 140.85 1.64 7.82 16 5 N -0.31 -5.96 9.65 -52.08 -0.50 -6.46 16 6 C -0.05 -1.10 7.35 44.29 0.33 -0.77 16 7 C 0.62 15.84 7.90 86.92 0.69 16.53 16 8 O -0.54 -16.58 16.19 -3.71 -0.06 -16.64 16 9 N -0.60 -14.46 3.32 -814.17 -2.70 -17.16 16 10 C 0.10 1.90 6.07 86.51 0.53 2.43 16 11 C -0.09 -1.76 3.86 -9.44 -0.04 -1.80 16 12 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 13 C -0.10 -2.04 6.34 31.75 0.20 -1.84 16 14 C -0.14 -4.08 6.60 32.00 0.21 -3.87 16 15 C 0.18 6.08 3.04 46.15 0.14 6.22 16 16 H 0.05 1.91 7.20 -2.39 -0.02 1.90 16 17 N -0.75 -32.98 5.04 -317.49 -1.60 -34.58 16 18 C -0.22 -12.38 10.46 84.04 0.88 -11.50 16 19 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 20 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 21 N -0.99 -62.92 13.97 21.65 0.30 -62.62 16 22 Si 0.95 44.97 27.73 68.60 1.90 46.87 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 25 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 26 C -0.10 -2.64 3.70 -8.76 -0.03 -2.68 16 27 H 0.09 2.47 7.78 -2.39 -0.02 2.45 16 28 C 0.12 3.21 6.59 87.18 0.57 3.79 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.39 7.32 -2.39 -0.02 1.37 16 32 H 0.10 1.70 5.92 -2.39 -0.01 1.69 16 33 H 0.09 1.52 7.14 -2.39 -0.02 1.50 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.42 7.21 -2.39 -0.02 1.41 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.36 15.50 5.43 -92.71 -0.50 15.00 16 39 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.07 2.12 7.92 -2.39 -0.02 2.11 16 41 H 0.08 2.18 7.21 -2.38 -0.02 2.16 16 Total: -1.00 -68.79 334.25 3.88 -64.91 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.51 Total: 20.52 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.02 Total: 4.50 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -5.14 Total: -127.97 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 1.58 Total: -8.82 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Total: -68.79 3.88 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026431450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.491 kcal (2) G-P(sol) polarization free energy of solvation -68.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds