Wall clock time and date at job start Tue Mar 31 2020 08:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30275 * 126.28470 * 2 1 4 4 N 1.28665 * 109.37818 * 179.73025 * 3 2 1 5 5 C 1.30267 * 109.38401 * 0.44366 * 4 3 2 6 6 C 1.50703 * 126.28477 * 179.82558 * 5 4 3 7 7 C 1.50705 * 109.47283 * 89.68763 * 6 5 4 8 8 O 1.21285 * 119.99761 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00198 * 180.27935 * 7 6 5 10 10 C 1.47160 * 120.70955 * 359.44706 * 9 7 6 11 11 C 1.54319 * 107.80341 * 132.68311 * 10 9 7 12 12 H 1.09008 * 112.53058 * 182.37389 * 11 10 9 13 13 C 1.54540 * 107.98423 * 306.74054 * 11 10 9 14 14 C 1.55858 * 104.99791 * 89.00764 * 13 11 10 15 15 C 1.54545 * 104.09627 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.17893 * 146.81468 * 15 14 13 17 17 C 1.47165 * 120.71071 * 179.72862 * 9 7 6 18 18 N 1.48310 * 104.90740 * 24.75553 * 15 14 13 19 19 C 1.36932 * 128.07361 * 138.83129 * 18 15 14 20 20 H 1.07993 * 120.00447 * 344.87007 * 19 18 15 21 21 C 1.38811 * 119.99683 * 164.87326 * 19 18 15 22 22 N 1.31621 * 120.00303 * 350.26092 * 21 19 18 23 23 Si 1.86802 * 120.00166 * 170.26045 * 21 19 18 24 24 H 1.48499 * 109.47202 * 89.99587 * 23 21 19 25 25 H 1.48497 * 109.47439 * 210.00082 * 23 21 19 26 26 H 1.48502 * 109.47031 * 330.00237 * 23 21 19 27 27 O 1.34363 * 107.43740 * 359.56499 * 5 4 3 28 28 H 1.08997 * 109.46744 * 270.00117 * 1 2 3 29 29 H 1.09004 * 109.46699 * 29.99992 * 1 2 3 30 30 H 1.09003 * 109.46699 * 149.99992 * 1 2 3 31 31 H 1.09008 * 109.47261 * 329.69354 * 6 5 4 32 32 H 1.08999 * 109.47770 * 209.69172 * 6 5 4 33 33 H 1.09006 * 109.75321 * 252.38845 * 10 9 7 34 34 H 1.09002 * 109.75320 * 13.12037 * 10 9 7 35 35 H 1.09002 * 110.36396 * 207.85624 * 13 11 10 36 36 H 1.08996 * 110.36703 * 330.06177 * 13 11 10 37 37 H 1.09000 * 110.89958 * 241.32858 * 14 13 11 38 38 H 1.08996 * 110.54728 * 118.52610 * 14 13 11 39 39 H 1.09004 * 109.74583 * 346.87761 * 17 9 7 40 40 H 1.08994 * 109.75233 * 107.55869 * 17 9 7 41 41 H 0.97000 * 120.00249 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5654 -0.6255 0.0000 6 6 4.8176 -1.4640 0.0000 7 6 5.2351 -1.7434 1.4209 8 8 4.5800 -1.3053 2.3427 9 7 6.3392 -2.4759 1.6672 10 6 7.1420 -3.0206 0.5606 11 6 8.6242 -2.7068 0.8539 12 1 9.2878 -3.0425 0.0569 13 6 8.7478 -1.1887 1.1155 14 6 8.5134 -1.0231 2.6475 15 6 8.2730 -2.4648 3.1495 16 1 8.6530 -2.6175 4.1596 17 6 6.7645 -2.7532 3.0484 18 7 8.9533 -3.3326 2.1577 19 6 9.7086 -4.4506 2.3913 20 1 10.0708 -4.6593 3.3871 21 6 10.0088 -5.3158 1.3481 22 7 9.4156 -5.1716 0.1820 23 14 11.2548 -6.6848 1.5991 24 1 10.5592 -7.9049 2.0815 25 1 11.9337 -6.9784 0.3115 26 1 12.2619 -6.2593 2.6040 27 8 2.3021 -1.0832 0.0000 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 5.6148 -0.9266 -0.5138 32 1 4.6245 -2.4056 -0.5138 33 1 6.9964 -4.0990 0.4959 34 1 6.8436 -2.5512 -0.3768 35 1 9.7434 -0.8370 0.8451 36 1 7.9885 -0.6440 0.5544 37 1 7.6387 -0.4026 2.8422 38 1 9.3955 -0.5972 3.1256 39 1 6.2192 -2.1089 3.7381 40 1 6.5716 -3.7983 3.2904 41 1 9.6251 -5.7764 -0.5468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029296646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:41 Heat of formation + Delta-G solvation = 44.168615 kcal Electronic energy + Delta-G solvation = -25962.688066 eV Core-core repulsion = 22266.943527 eV Total energy + Delta-G solvation = -3695.744539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.20740 -40.14162 -37.95260 -36.14087 -33.89658 -33.62192 -32.51442 -31.27580 -30.31900 -29.28365 -27.51045 -26.01992 -24.05419 -23.76588 -22.87346 -22.45012 -20.05973 -19.72915 -18.66694 -17.80008 -17.12193 -16.87653 -16.09730 -15.82281 -15.43173 -14.90345 -14.79172 -14.27967 -14.01715 -13.72240 -13.51565 -13.11555 -13.02299 -12.93187 -12.84836 -12.42386 -12.34998 -11.85604 -11.82037 -11.74008 -11.68200 -11.16133 -10.96357 -10.95881 -10.82739 -10.39733 -10.13996 -9.94594 -9.79676 -9.68222 -9.66106 -9.35833 -8.86803 -8.20690 -6.93775 -5.94094 -3.27772 1.11953 2.16721 2.38499 2.84469 3.30421 3.37125 3.37960 3.40211 3.77954 4.29947 4.35206 4.68233 4.71356 5.01273 5.03892 5.08977 5.15838 5.25496 5.32728 5.42743 5.54898 5.58850 5.65897 5.67257 5.74937 5.83119 5.87574 6.03448 6.21475 6.32095 6.47124 6.52226 6.54802 6.65157 6.82118 6.83268 7.14073 7.36280 7.57457 7.87375 8.04379 8.30707 8.43762 8.97284 9.59290 10.35492 11.19698 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.028601 B = 0.003541 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.750326 B = 7905.929184 C = 8219.840491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.155 3.845 3 N -0.289 5.289 4 N -0.278 5.278 5 C 0.196 3.804 6 C -0.048 4.048 7 C 0.513 3.487 8 O -0.555 6.555 9 N -0.584 5.584 10 C 0.097 3.903 11 C 0.168 3.832 12 H 0.121 0.879 13 C -0.136 4.136 14 C -0.126 4.126 15 C 0.134 3.866 16 H 0.079 0.921 17 C 0.103 3.897 18 N -0.584 5.584 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.916 5.916 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 O -0.221 6.221 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 6.172 -2.888 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.055 4.055 3 N -0.137 5.137 4 N -0.124 5.124 5 C -0.016 4.016 6 C -0.089 4.089 7 C 0.299 3.701 8 O -0.435 6.435 9 N -0.315 5.315 10 C -0.026 4.026 11 C 0.060 3.940 12 H 0.139 0.861 13 C -0.175 4.175 14 C -0.165 4.165 15 C 0.025 3.975 16 H 0.097 0.903 17 C -0.021 4.021 18 N -0.304 5.304 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.200 4.200 22 N -0.563 5.563 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 O -0.100 6.100 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.430 7.375 -2.507 13.832 hybrid contribution 0.241 -2.066 0.025 2.081 sum -11.189 5.308 -2.482 12.631 Atomic orbital electron populations 1.20318 0.80348 1.05456 1.05203 1.27926 0.97771 0.79757 1.00082 1.74348 0.96118 1.25695 1.17521 1.74351 1.12073 1.09011 1.16946 1.27026 0.84609 0.91234 0.98721 1.20214 0.89537 1.00342 0.98778 1.19856 0.81399 0.79414 0.89480 1.90697 1.54156 1.52821 1.45827 1.48158 1.24353 1.49969 1.09032 1.22840 0.93823 0.99954 0.85989 1.21946 0.92349 0.87860 0.91822 0.86124 1.22912 0.99976 0.99064 0.95519 1.22756 1.00036 0.97147 0.96552 1.21972 0.89890 0.90782 0.94839 0.90335 1.22423 0.97454 1.00601 0.81615 1.45163 1.57053 1.27782 1.00446 1.19012 1.23274 0.97442 0.95509 0.90539 1.24801 1.00349 0.98243 0.96583 1.69804 1.43997 1.39628 1.02838 0.86123 0.80923 0.81711 0.76982 1.21570 1.21578 1.20672 1.84751 1.17509 1.38272 1.69510 0.88388 0.87661 0.88998 0.84227 0.85594 0.89351 0.92047 0.92550 0.93116 0.92471 0.92562 0.90623 0.91727 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.16 2.03 8.48 -12.94 -0.11 1.92 16 3 N -0.29 -4.64 12.22 32.55 0.40 -4.25 16 4 N -0.28 -4.82 12.22 32.55 0.40 -4.42 16 5 C 0.20 3.06 6.97 -12.94 -0.09 2.97 16 6 C -0.05 -0.65 4.71 -29.03 -0.14 -0.79 16 7 C 0.51 8.93 7.70 -10.99 -0.08 8.84 16 8 O -0.56 -11.54 15.50 5.55 0.09 -11.45 16 9 N -0.58 -10.39 2.25 -171.24 -0.38 -10.77 16 10 C 0.10 1.76 5.74 -2.99 -0.02 1.74 16 11 C 0.17 3.42 3.13 -65.43 -0.20 3.21 16 12 H 0.12 2.79 6.39 -51.92 -0.33 2.45 16 13 C -0.14 -2.40 6.22 -24.40 -0.15 -2.55 16 14 C -0.13 -2.21 6.31 -24.39 -0.15 -2.37 16 15 C 0.13 2.57 4.27 -65.65 -0.28 2.29 16 16 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 17 C 0.10 1.93 5.89 -3.20 -0.02 1.91 16 18 N -0.58 -13.13 2.81 -152.32 -0.43 -13.56 16 19 C -0.22 -5.63 10.37 -15.06 -0.16 -5.78 16 20 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 21 C 0.00 -0.07 5.41 -17.43 -0.09 -0.17 16 22 N -0.92 -23.42 10.43 55.49 0.58 -22.84 16 23 Si 0.91 20.44 29.56 -169.99 -5.03 15.41 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 O -0.22 -3.26 10.87 5.37 0.06 -3.20 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.14 1.62 7.60 -51.92 -0.39 1.22 16 32 H 0.13 1.37 8.05 -51.93 -0.42 0.95 16 33 H 0.09 1.85 7.82 -51.93 -0.41 1.45 16 34 H 0.06 0.90 6.08 -51.93 -0.32 0.58 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.81 7.85 -51.93 -0.41 0.41 16 37 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.39 7.11 -51.93 -0.37 1.03 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -31.53 334.78 -5.95 -37.48 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.56 Total: 1.31 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -1.12 Total: 11.24 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.56 Total: -55.84 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.14 Total: -14.65 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.53 -5.95 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029296646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.651 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds