Wall clock time and date at job start Tue Mar 31 2020 08:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47337 * 2 1 4 4 C 1.50708 * 109.46934 * 240.00285 * 2 1 3 5 5 O 1.21286 * 119.99762 * 240.00497 * 4 2 1 6 6 N 1.34773 * 120.00004 * 59.99704 * 4 2 1 7 7 C 1.46497 * 119.99822 * 179.97438 * 6 4 2 8 8 C 1.53945 * 113.74700 * 253.74320 * 7 6 4 9 9 N 1.47808 * 86.04070 * 222.08898 * 8 7 6 10 10 C 1.36941 * 134.45619 * 204.64858 * 9 8 7 11 11 H 1.07999 * 120.00004 * 179.86023 * 10 9 8 12 12 C 1.38812 * 119.99750 * 359.85867 * 10 9 8 13 13 N 1.31621 * 120.00316 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99712 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47150 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.47190 * 120.00313 * 14 12 10 17 17 H 1.48501 * 109.46936 * 240.00287 * 14 12 10 18 18 C 1.47582 * 91.05206 * 24.54663 * 9 8 7 19 19 C 1.50699 * 109.47089 * 120.00547 * 2 1 3 20 20 C 1.38219 * 120.00977 * 239.99414 * 19 2 1 21 21 C 1.38227 * 120.02402 * 179.74165 * 20 19 2 22 22 C 1.38262 * 120.05195 * 0.25898 * 21 20 19 23 23 C 1.38177 * 120.02487 * 359.97438 * 22 21 20 24 24 C 1.38438 * 120.01661 * 60.25185 * 19 2 1 25 25 F 1.35104 * 120.02404 * 359.97438 * 24 19 2 26 26 H 1.09001 * 109.46998 * 299.99917 * 1 2 3 27 27 H 1.09004 * 109.46878 * 59.99777 * 1 2 3 28 28 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47351 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47318 * 299.99953 * 3 2 1 31 31 H 1.09001 * 109.47009 * 60.00090 * 3 2 1 32 32 H 0.96996 * 119.99837 * 0.02562 * 6 4 2 33 33 H 1.09005 * 112.94759 * 25.33868 * 7 6 4 34 34 H 1.09003 * 113.76558 * 336.35324 * 8 7 6 35 35 H 1.08997 * 113.76941 * 107.74496 * 8 7 6 36 36 H 0.96999 * 119.99871 * 179.97438 * 13 12 10 37 37 H 1.08995 * 113.77063 * 221.15598 * 18 9 8 38 38 H 1.09002 * 113.76816 * 89.75482 * 18 9 8 39 39 H 1.08002 * 119.99072 * 0.02773 * 20 19 2 40 40 H 1.07998 * 119.97011 * 180.23492 * 21 20 19 41 41 H 1.08004 * 119.99089 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.01221 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7295 -1.6966 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 3.3204 -0.1878 -4.3845 9 7 2.6195 -0.5637 -5.6304 10 6 3.0042 -0.7320 -6.9338 11 1 2.2772 -1.0209 -7.6784 12 6 4.3286 -0.5312 -7.2980 13 7 5.2147 -0.1796 -6.3905 14 14 4.8532 -0.7602 -9.0762 15 1 3.6766 -1.1531 -9.8927 16 1 5.4121 0.5138 -9.5953 17 1 5.8876 -1.8228 -9.1542 18 6 1.3400 -0.6871 -4.9055 19 6 2.0323 -0.7105 1.2304 20 6 2.8271 -0.0391 2.1403 21 6 3.2836 -0.6890 3.2717 22 6 2.9503 -2.0127 3.4918 23 6 2.1599 -2.6873 2.5811 24 6 1.7024 -2.0374 1.4470 25 9 0.9295 -2.6961 0.5559 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.1493 0.5389 -2.5435 33 1 2.4144 -1.9933 -3.4741 34 1 3.3295 0.8850 -4.1921 35 1 4.3018 -0.6493 -4.2747 36 1 6.1402 -0.0396 -6.6451 37 1 0.7431 -1.5464 -5.2109 38 1 0.7661 0.2388 -4.8664 39 1 3.0877 0.9950 1.9697 40 1 3.9014 -0.1624 3.9840 41 1 3.3079 -2.5196 4.3759 42 1 1.8994 -3.7211 2.7534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031106924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:33 Heat of formation + Delta-G solvation = 0.118561 kcal Electronic energy + Delta-G solvation = -25423.715866 eV Core-core repulsion = 21706.141212 eV Total energy + Delta-G solvation = -3717.574654 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.79369 -40.37407 -38.81945 -37.50667 -35.30827 -33.42643 -31.76995 -30.73416 -29.77684 -27.62780 -27.40989 -24.81681 -24.43155 -23.29663 -22.44255 -21.66090 -19.71036 -19.28962 -17.69287 -16.88620 -16.78557 -16.28801 -16.04474 -15.41793 -15.33974 -14.95120 -14.54018 -14.25792 -14.23823 -13.96020 -13.78939 -13.20396 -12.88209 -12.60009 -12.36630 -12.35489 -12.25282 -12.11431 -11.84792 -11.71020 -11.46506 -11.42627 -11.20812 -10.89012 -10.78893 -10.75749 -10.40517 -10.00970 -9.55095 -9.40440 -9.01757 -8.81257 -8.65028 -8.39334 -6.91553 -5.77198 -3.11133 1.08787 1.15183 2.95763 3.34521 3.39932 3.44479 3.47319 3.68072 4.24002 4.30046 4.45494 4.58303 4.78468 4.79113 4.91998 4.95741 5.15677 5.18100 5.27866 5.39683 5.48407 5.53765 5.56431 5.59256 5.64309 5.75247 5.89679 5.95523 6.01318 6.05304 6.12445 6.22425 6.24647 6.30130 6.42470 6.57807 6.79414 6.82322 7.24450 7.37931 7.56811 7.90953 7.96850 8.59374 9.02928 9.69259 10.56003 11.39553 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.003183 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.564991 B = 8795.759391 C = 8920.190280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.143 4.143 4 C 0.522 3.478 5 O -0.531 6.531 6 N -0.712 5.712 7 C 0.093 3.907 8 C 0.155 3.845 9 N -0.607 5.607 10 C -0.225 4.225 11 H 0.082 0.918 12 C -0.007 4.007 13 N -0.918 5.918 14 Si 0.914 3.086 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.289 1.289 18 C 0.113 3.887 19 C -0.095 4.095 20 C -0.088 4.088 21 C -0.137 4.137 22 C -0.094 4.094 23 C -0.161 4.161 24 C 0.133 3.867 25 F -0.131 7.131 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.395 0.605 33 H 0.109 0.891 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 2.521 21.254 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 C -0.200 4.200 4 C 0.306 3.694 5 O -0.407 6.407 6 N -0.362 5.362 7 C -0.012 4.012 8 C 0.028 3.972 9 N -0.334 5.334 10 C -0.352 4.352 11 H 0.100 0.900 12 C -0.204 4.204 13 N -0.565 5.565 14 Si 0.744 3.256 15 H -0.204 1.204 16 H -0.217 1.217 17 H -0.216 1.216 18 C -0.014 4.014 19 C -0.096 4.096 20 C -0.106 4.106 21 C -0.155 4.155 22 C -0.112 4.112 23 C -0.179 4.179 24 C 0.114 3.886 25 F -0.109 7.109 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.229 0.771 33 H 0.127 0.873 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.495 1.754 20.983 22.705 hybrid contribution 0.019 0.263 -1.236 1.264 sum -8.476 2.017 19.747 21.583 Atomic orbital electron populations 1.21937 0.91627 1.03633 1.02903 1.19693 0.97420 0.96356 0.91150 1.21953 1.02210 0.92781 1.03079 1.20164 0.80426 0.84461 0.84339 1.90715 1.37429 1.26088 1.86499 1.46062 1.53076 1.31458 1.05653 1.23885 0.97625 0.98474 0.81191 1.22703 0.96271 0.95726 0.82473 1.45722 1.03220 1.79809 1.04621 1.19034 0.93325 1.40266 0.82599 0.90008 1.24821 0.95857 1.01645 0.98039 1.69844 1.02241 1.52500 1.31884 0.86021 0.78372 0.77346 0.83847 1.20409 1.21719 1.21605 1.22867 0.91039 0.98097 0.89420 1.19436 1.00591 0.92884 0.96686 1.21047 0.95739 1.00487 0.93319 1.21130 1.01218 0.95049 0.98079 1.20970 0.96880 0.94580 0.98739 1.21114 1.01332 1.01021 0.94480 1.17444 0.93232 0.90075 0.87875 1.91487 1.71942 1.80616 1.66841 0.91374 0.91326 0.91256 0.91320 0.91245 0.91070 0.77143 0.87269 0.95422 0.90571 0.93604 0.93272 0.94765 0.84663 0.85488 0.85323 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.16 37.16 0.30 -1.14 16 2 C -0.04 -0.52 0.61 -156.81 -0.10 -0.62 16 3 C -0.14 -1.36 7.03 37.15 0.26 -1.10 16 4 C 0.52 8.60 5.92 -10.98 -0.07 8.53 16 5 O -0.53 -11.09 14.16 5.55 0.08 -11.01 16 6 N -0.71 -11.32 5.16 -55.33 -0.29 -11.60 16 7 C 0.09 1.87 4.40 -70.14 -0.31 1.56 16 8 C 0.15 3.77 7.33 -2.84 -0.02 3.75 16 9 N -0.61 -15.82 3.70 -177.86 -0.66 -16.48 16 10 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 11 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 12 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 13 N -0.92 -27.77 11.39 55.49 0.63 -27.14 16 14 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 C 0.11 2.29 8.69 -2.96 -0.03 2.27 16 19 C -0.09 -1.21 4.38 -104.56 -0.46 -1.67 16 20 C -0.09 -0.92 8.97 -39.59 -0.36 -1.28 16 21 C -0.14 -1.27 10.04 -39.58 -0.40 -1.66 16 22 C -0.09 -0.89 10.04 -39.59 -0.40 -1.29 16 23 C -0.16 -1.85 10.03 -39.52 -0.40 -2.24 16 24 C 0.13 1.85 6.13 -39.42 -0.24 1.61 16 25 F -0.13 -2.05 13.80 2.25 0.03 -2.02 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 28 H 0.07 0.80 6.33 -51.93 -0.33 0.47 16 29 H 0.07 0.71 7.51 -51.93 -0.39 0.32 16 30 H 0.07 0.61 7.56 -51.93 -0.39 0.21 16 31 H 0.07 0.51 7.51 -51.93 -0.39 0.12 16 32 H 0.39 5.06 7.55 -40.82 -0.31 4.75 16 33 H 0.11 2.43 7.51 -51.93 -0.39 2.04 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 2.12 7.16 -51.93 -0.37 1.75 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.14 1.13 5.90 -52.49 -0.31 0.82 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -34.76 344.46 -8.27 -43.03 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.78 Total: 2.80 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.45 Total: -0.13 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.31 Total: -55.23 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.03 Total: -2.02 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.76 -8.27 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031106924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.147 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds