Wall clock time and date at job start Tue Mar 31 2020 08:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30646 * 128.64526 * 2 1 4 4 O 1.20834 * 109.62081 * 180.23616 * 3 2 1 5 5 N 1.20895 * 115.91191 * 359.74081 * 4 3 2 6 6 C 1.31607 * 109.18032 * 359.97438 * 5 4 3 7 7 C 1.48273 * 128.71473 * 179.97438 * 6 5 4 8 8 O 1.21507 * 119.99917 * 185.76969 * 7 6 5 9 9 N 1.34775 * 119.99991 * 5.76914 * 7 6 5 10 10 C 1.45948 * 118.25901 * 175.05296 * 9 7 6 11 11 C 1.53167 * 108.18919 * 148.93213 * 10 9 7 12 12 C 1.52827 * 108.59562 * 61.95122 * 11 10 9 13 13 H 1.08998 * 109.25896 * 63.15827 * 12 11 10 14 14 C 1.51786 * 111.97523 * 301.49101 * 12 11 10 15 15 H 1.09003 * 107.16604 * 142.35730 * 14 12 11 16 16 C 1.54128 * 105.57167 * 256.09675 * 14 12 11 17 17 C 1.54223 * 103.28794 * 334.26990 * 16 14 12 18 18 N 1.46887 * 106.56355 * 27.29535 * 17 16 14 19 19 C 1.36933 * 125.45404 * 161.40526 * 18 17 16 20 20 H 1.08001 * 120.00417 * 188.51047 * 19 18 17 21 21 C 1.38810 * 120.00200 * 8.51749 * 19 18 17 22 22 N 1.31622 * 120.00036 * 14.87723 * 21 19 18 23 23 Si 1.86799 * 120.00187 * 194.87458 * 21 19 18 24 24 H 1.48500 * 109.47113 * 94.98229 * 23 21 19 25 25 H 1.48496 * 109.47399 * 214.98274 * 23 21 19 26 26 H 1.48505 * 109.47225 * 334.98679 * 23 21 19 27 27 C 1.44373 * 118.26142 * 355.07740 * 9 7 6 28 28 H 1.08997 * 109.47011 * 270.15829 * 1 2 3 29 29 H 1.08999 * 109.46881 * 30.16799 * 1 2 3 30 30 H 1.08998 * 109.46937 * 150.16470 * 1 2 3 31 31 H 1.09006 * 109.71325 * 268.61390 * 10 9 7 32 32 H 1.08991 * 109.71564 * 29.25854 * 10 9 7 33 33 H 1.09000 * 109.62774 * 302.21579 * 11 10 9 34 34 H 1.08992 * 109.60985 * 181.68171 * 11 10 9 35 35 H 1.08994 * 110.69069 * 215.81663 * 16 14 12 36 36 H 1.08997 * 110.66037 * 92.70484 * 16 14 12 37 37 H 1.09005 * 110.04754 * 268.01103 * 17 16 14 38 38 H 1.09001 * 110.05234 * 146.58939 * 17 16 14 39 39 H 0.97000 * 120.00115 * 180.02562 * 22 21 19 40 40 H 1.09005 * 107.88556 * 52.88174 * 27 9 7 41 41 H 1.08999 * 107.88358 * 296.82212 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6265 -0.0047 5 7 3.6102 -0.5737 -0.0033 6 6 2.4280 -1.1520 0.0038 7 6 2.1034 -2.5988 0.0075 8 8 0.9483 -2.9625 -0.0917 9 7 3.0896 -3.5104 0.1208 10 6 2.7201 -4.9181 0.2307 11 6 3.8298 -5.7553 -0.4124 12 6 5.1269 -5.5222 0.3614 13 1 5.0034 -5.8761 1.3849 14 6 5.5262 -4.0578 0.3725 15 1 5.9438 -3.8457 1.3568 16 6 6.6812 -3.9363 -0.6408 17 6 7.2893 -5.3535 -0.6570 18 7 6.2062 -6.2780 -0.2966 19 6 6.2012 -7.6266 -0.5340 20 1 5.3048 -8.2026 -0.3578 21 6 7.3483 -8.2534 -1.0008 22 7 8.5080 -7.6339 -0.9399 23 14 7.2463 -9.9763 -1.7153 24 1 7.1177 -9.8929 -3.1924 25 1 8.4774 -10.7303 -1.3674 26 1 6.0624 -10.6756 -1.1542 27 6 4.4554 -3.0427 0.1275 28 1 -0.3633 0.0028 1.0276 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 2.6159 -5.1899 1.2812 32 1 1.7787 -5.0929 -0.2901 33 1 3.9633 -5.4508 -1.4505 34 1 3.5629 -6.8112 -0.3696 35 1 7.4162 -3.2066 -0.3013 36 1 6.3010 -3.6700 -1.6271 37 1 8.0968 -5.4219 0.0720 38 1 7.6646 -5.5878 -1.6531 39 1 9.3096 -8.0718 -1.2665 40 1 4.5419 -2.2729 0.8944 41 1 4.6532 -2.5733 -0.8362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036910694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:44 Heat of formation + Delta-G solvation = 117.672380 kcal Electronic energy + Delta-G solvation = -25872.987904 eV Core-core repulsion = 22180.430727 eV Total energy + Delta-G solvation = -3692.557177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.08180 -40.55654 -38.50188 -35.79277 -35.35623 -34.85488 -32.83688 -32.06304 -30.00211 -29.55921 -28.33557 -26.30942 -24.91882 -23.70630 -22.82132 -22.48287 -20.67008 -20.29968 -19.27046 -18.54404 -17.50509 -17.30586 -17.06645 -16.32246 -15.72728 -14.97803 -14.82743 -14.44467 -14.10493 -13.93046 -13.82853 -13.54928 -13.31529 -13.11031 -12.67245 -12.43143 -12.22147 -12.19117 -11.64153 -11.62259 -11.48969 -11.32869 -11.05086 -10.81133 -10.76023 -10.58117 -10.49243 -10.27223 -10.11491 -9.87911 -9.74669 -9.64993 -8.65052 -8.59356 -6.88384 -5.80469 -3.11497 0.57248 1.07368 2.45522 2.73662 3.14628 3.24729 3.37085 3.43187 3.44860 3.61365 4.36811 4.43663 4.50739 4.82745 4.84626 5.00976 5.12807 5.15869 5.21524 5.28199 5.36664 5.45762 5.60340 5.67552 5.77485 5.78668 5.91745 5.95476 6.14149 6.19314 6.31832 6.45739 6.48567 6.57993 6.77906 6.95129 7.13119 7.42460 7.55356 7.73840 7.77047 8.19572 8.23650 9.14146 9.76590 10.42338 11.32536 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.003544 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.265178 B = 7898.223195 C = 8634.666062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.360 5.360 4 O 0.338 5.662 5 N -0.313 5.313 6 C -0.041 4.041 7 C 0.595 3.405 8 O -0.521 6.521 9 N -0.573 5.573 10 C 0.114 3.886 11 C -0.137 4.137 12 C 0.172 3.828 13 H 0.035 0.965 14 C -0.099 4.099 15 H 0.068 0.932 16 C -0.133 4.133 17 C 0.173 3.827 18 N -0.594 5.594 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.913 5.913 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.127 3.873 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.253 0.747 40 H 0.070 0.930 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 14.742 2.549 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 N -0.086 5.086 4 O 0.113 5.887 5 N -0.034 5.034 6 C -0.206 4.206 7 C 0.379 3.621 8 O -0.396 6.396 9 N -0.304 5.304 10 C -0.008 4.008 11 C -0.177 4.177 12 C 0.064 3.936 13 H 0.052 0.948 14 C -0.119 4.119 15 H 0.086 0.914 16 C -0.172 4.172 17 C 0.048 3.952 18 N -0.318 5.318 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.559 5.559 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.004 3.996 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.706 15.022 2.449 19.201 hybrid contribution -0.374 -1.386 -0.330 1.473 sum -12.079 13.636 2.119 18.339 Atomic orbital electron populations 1.20338 0.82997 1.05292 1.04643 1.26212 1.00308 0.85228 0.98887 1.75048 0.91255 1.24125 1.18194 1.85077 1.23223 1.17085 1.63267 1.75656 1.22759 0.92445 1.12522 1.26104 0.87991 0.98538 1.07950 1.16556 0.85484 0.81664 0.78389 1.90787 1.18929 1.79354 1.50545 1.47235 1.06383 1.07461 1.69369 1.21706 0.99750 0.77799 1.01513 1.22321 0.94991 0.99849 1.00572 1.20246 0.89211 0.89027 0.95077 0.94772 1.20820 0.95034 0.95014 1.01009 0.91361 1.22811 0.96337 1.00619 0.97423 1.21091 0.90126 0.83697 1.00275 1.44484 1.15980 1.03755 1.67564 1.18965 0.96465 0.82124 1.38446 0.90427 1.24786 0.94991 0.98225 1.02148 1.70009 0.97590 1.37937 1.50383 0.86178 0.76987 0.83845 0.79250 1.21619 1.21843 1.20522 1.20561 0.79998 0.96545 1.02486 0.88935 0.89493 0.87886 0.91316 0.89372 0.91322 0.90040 0.91644 0.92319 0.94737 0.92647 0.93689 0.91190 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.25 36.00 0.37 -0.20 16 2 C 0.06 0.64 7.79 -79.33 -0.62 0.02 16 3 N -0.36 -4.02 12.22 33.76 0.41 -3.60 16 4 O 0.34 3.85 11.65 27.27 0.32 4.16 16 5 N -0.31 -3.85 8.98 33.49 0.30 -3.55 16 6 C -0.04 -0.51 7.13 -80.07 -0.57 -1.08 16 7 C 0.59 8.43 7.63 -12.13 -0.09 8.33 16 8 O -0.52 -8.01 15.30 5.36 0.08 -7.93 16 9 N -0.57 -8.27 3.14 -178.69 -0.56 -8.83 16 10 C 0.11 1.64 6.19 -4.25 -0.03 1.62 16 11 C -0.14 -2.35 5.21 -26.73 -0.14 -2.49 16 12 C 0.17 3.32 3.20 -68.21 -0.22 3.10 16 13 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 14 C -0.10 -1.63 2.75 -92.34 -0.25 -1.89 16 15 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 16 C -0.13 -2.34 6.40 -25.50 -0.16 -2.51 16 17 C 0.17 4.00 5.38 -3.19 -0.02 3.99 16 18 N -0.59 -14.30 3.14 -164.82 -0.52 -14.81 16 19 C -0.23 -6.16 9.68 -15.06 -0.15 -6.31 16 20 H 0.08 1.99 7.34 -52.49 -0.39 1.61 16 21 C 0.00 -0.12 5.34 -17.43 -0.09 -0.21 16 22 N -0.91 -26.19 10.81 55.49 0.60 -25.59 16 23 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.13 1.81 4.41 -6.87 -0.03 1.78 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.85 7.24 -51.93 -0.38 0.48 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.24 7.20 -51.93 -0.37 0.87 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.43 7.49 -51.93 -0.39 1.04 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.00 7.69 -51.93 -0.40 0.60 16 37 H 0.03 0.88 7.81 -51.93 -0.41 0.47 16 38 H 0.06 1.43 7.31 -51.93 -0.38 1.05 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.07 0.93 6.43 -51.93 -0.33 0.60 16 41 H 0.07 0.96 6.78 -51.93 -0.35 0.61 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -29.59 328.07 -6.94 -36.53 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.49 Total: -2.03 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -2.00 Total: 4.16 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.23 Total: -56.38 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.40 Total: -3.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.59 -6.94 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036910694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.199 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds