Wall clock time and date at job start Tue Mar 31 2020 08:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30646 * 128.64526 * 2 1 4 4 O 1.20834 * 109.62081 * 180.23616 * 3 2 1 5 5 N 1.20895 * 115.91191 * 359.74081 * 4 3 2 6 6 C 1.31607 * 109.18032 * 359.97438 * 5 4 3 7 7 C 1.48273 * 128.71473 * 179.97438 * 6 5 4 8 8 O 1.21507 * 119.99917 * 185.76969 * 7 6 5 9 9 N 1.34775 * 119.99991 * 5.76914 * 7 6 5 10 10 C 1.45948 * 118.25901 * 175.05296 * 9 7 6 11 11 C 1.53167 * 108.18919 * 148.93213 * 10 9 7 12 12 C 1.52827 * 108.59562 * 61.95122 * 11 10 9 13 13 H 1.08998 * 109.25896 * 63.15827 * 12 11 10 14 14 C 1.51786 * 111.97523 * 301.49101 * 12 11 10 15 15 H 1.09003 * 107.16604 * 142.35730 * 14 12 11 16 16 C 1.54128 * 105.57167 * 256.09675 * 14 12 11 17 17 C 1.54223 * 103.28794 * 334.26990 * 16 14 12 18 18 N 1.46887 * 106.56355 * 27.29535 * 17 16 14 19 19 C 1.36933 * 125.45404 * 161.40526 * 18 17 16 20 20 H 1.08001 * 120.00417 * 188.51047 * 19 18 17 21 21 C 1.38810 * 120.00200 * 8.51749 * 19 18 17 22 22 N 1.31622 * 120.00036 * 14.87723 * 21 19 18 23 23 Si 1.86799 * 120.00187 * 194.87458 * 21 19 18 24 24 H 1.48500 * 109.47113 * 94.98229 * 23 21 19 25 25 H 1.48496 * 109.47399 * 214.98274 * 23 21 19 26 26 H 1.48505 * 109.47225 * 334.98679 * 23 21 19 27 27 C 1.44373 * 118.26142 * 355.07740 * 9 7 6 28 28 H 1.08997 * 109.47011 * 270.15829 * 1 2 3 29 29 H 1.08999 * 109.46881 * 30.16799 * 1 2 3 30 30 H 1.08998 * 109.46937 * 150.16470 * 1 2 3 31 31 H 1.09006 * 109.71325 * 268.61390 * 10 9 7 32 32 H 1.08991 * 109.71564 * 29.25854 * 10 9 7 33 33 H 1.09000 * 109.62774 * 302.21579 * 11 10 9 34 34 H 1.08992 * 109.60985 * 181.68171 * 11 10 9 35 35 H 1.08994 * 110.69069 * 215.81663 * 16 14 12 36 36 H 1.08997 * 110.66037 * 92.70484 * 16 14 12 37 37 H 1.09005 * 110.04754 * 268.01103 * 17 16 14 38 38 H 1.09001 * 110.05234 * 146.58939 * 17 16 14 39 39 H 0.97000 * 120.00115 * 180.02562 * 22 21 19 40 40 H 1.09005 * 107.88556 * 52.88174 * 27 9 7 41 41 H 1.08999 * 107.88358 * 296.82212 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6265 -0.0047 5 7 3.6102 -0.5737 -0.0033 6 6 2.4280 -1.1520 0.0038 7 6 2.1034 -2.5988 0.0075 8 8 0.9483 -2.9625 -0.0917 9 7 3.0896 -3.5104 0.1208 10 6 2.7201 -4.9181 0.2307 11 6 3.8298 -5.7553 -0.4124 12 6 5.1269 -5.5222 0.3614 13 1 5.0034 -5.8761 1.3849 14 6 5.5262 -4.0578 0.3725 15 1 5.9438 -3.8457 1.3568 16 6 6.6812 -3.9363 -0.6408 17 6 7.2893 -5.3535 -0.6570 18 7 6.2062 -6.2780 -0.2966 19 6 6.2012 -7.6266 -0.5340 20 1 5.3048 -8.2026 -0.3578 21 6 7.3483 -8.2534 -1.0008 22 7 8.5080 -7.6339 -0.9399 23 14 7.2463 -9.9763 -1.7153 24 1 7.1177 -9.8929 -3.1924 25 1 8.4774 -10.7303 -1.3674 26 1 6.0624 -10.6756 -1.1542 27 6 4.4554 -3.0427 0.1275 28 1 -0.3633 0.0028 1.0276 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 2.6159 -5.1899 1.2812 32 1 1.7787 -5.0929 -0.2901 33 1 3.9633 -5.4508 -1.4505 34 1 3.5629 -6.8112 -0.3696 35 1 7.4162 -3.2066 -0.3013 36 1 6.3010 -3.6700 -1.6271 37 1 8.0968 -5.4219 0.0720 38 1 7.6646 -5.5878 -1.6531 39 1 9.3096 -8.0718 -1.2665 40 1 4.5419 -2.2729 0.8944 41 1 4.6532 -2.5733 -0.8362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036910694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:44 Heat of formation + Delta-G solvation = 99.922938 kcal Electronic energy + Delta-G solvation = -25873.757577 eV Core-core repulsion = 22180.430727 eV Total energy + Delta-G solvation = -3693.326850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.96649 -41.76853 -39.90382 -37.11663 -36.24326 -35.83957 -34.59532 -33.48568 -31.60155 -30.41177 -29.84266 -27.53669 -26.46024 -25.18690 -24.02662 -23.45621 -22.27647 -21.60852 -20.16124 -19.77434 -18.93719 -18.59908 -18.36868 -17.52417 -16.98774 -16.77158 -16.35611 -15.70940 -15.37730 -15.09376 -14.76258 -14.49049 -14.40519 -14.37399 -14.20399 -13.92335 -13.54084 -13.33612 -13.04459 -12.93673 -12.82099 -12.63830 -12.57131 -12.43063 -12.23935 -11.98585 -11.88811 -11.67437 -11.54346 -11.38053 -11.32060 -11.25078 -10.63769 -9.80100 -8.86885 -7.87940 -5.19828 -0.38726 0.24091 1.39753 1.46295 1.47979 1.56299 1.68159 2.24866 2.37549 2.49412 2.67155 3.29785 3.39221 3.46119 3.62315 3.66276 3.80280 3.83491 4.07075 4.12176 4.18862 4.35999 4.43899 4.56516 4.61607 4.65423 4.70362 4.72945 4.81691 4.87919 5.03912 5.07985 5.10770 5.20826 5.39280 5.45066 5.53561 5.61328 5.74181 5.98343 6.20504 6.66296 7.09805 7.35370 7.78782 8.43173 9.24250 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.003544 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.265178 B = 7898.223195 C = 8634.666062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.069 3.931 3 N -0.365 5.365 4 O 0.344 5.656 5 N -0.316 5.316 6 C -0.058 4.058 7 C 0.599 3.401 8 O -0.533 6.533 9 N -0.579 5.579 10 C 0.124 3.876 11 C -0.125 4.125 12 C 0.165 3.835 13 H 0.030 0.970 14 C -0.090 4.090 15 H 0.078 0.922 16 C -0.118 4.118 17 C 0.178 3.822 18 N -0.614 5.614 19 C -0.235 4.235 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.946 5.946 23 Si 0.969 3.031 24 H -0.291 1.291 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.137 3.863 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.002 0.998 38 H 0.018 0.982 39 H 0.246 0.754 40 H 0.085 0.915 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 16.195 2.960 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 N -0.092 5.092 4 O 0.118 5.882 5 N -0.035 5.035 6 C -0.222 4.222 7 C 0.384 3.616 8 O -0.410 6.410 9 N -0.310 5.310 10 C 0.002 3.998 11 C -0.165 4.165 12 C 0.058 3.942 13 H 0.048 0.952 14 C -0.109 4.109 15 H 0.096 0.904 16 C -0.156 4.156 17 C 0.053 3.947 18 N -0.338 5.338 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.257 4.257 22 N -0.594 5.594 23 Si 0.798 3.202 24 H -0.218 1.218 25 H -0.225 1.225 26 H -0.190 1.190 27 C 0.014 3.986 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.020 0.980 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.796 16.477 2.873 21.681 hybrid contribution 0.227 -1.794 -0.429 1.858 sum -13.569 14.683 2.444 20.142 Atomic orbital electron populations 1.20512 0.80913 1.05983 1.05881 1.26660 1.01415 0.84264 0.97362 1.75077 0.91138 1.24133 1.18857 1.85073 1.23498 1.16615 1.63000 1.75604 1.22846 0.92844 1.12217 1.25959 0.88743 0.98118 1.09416 1.16606 0.85080 0.82145 0.77729 1.90781 1.19362 1.79775 1.51055 1.47229 1.06519 1.07491 1.69799 1.21583 0.98633 0.77509 1.02032 1.22095 0.94794 1.00039 0.99535 1.20471 0.88800 0.90330 0.94550 0.95231 1.20736 0.95449 0.93635 1.01113 0.90393 1.22665 0.97083 0.97368 0.98508 1.20881 0.89782 0.86950 0.97101 1.44776 1.17394 1.03571 1.68065 1.19336 0.96386 0.83589 1.37089 0.89879 1.25564 0.94877 1.01922 1.03316 1.70192 0.97975 1.39370 1.51897 0.85188 0.76964 0.79867 0.78144 1.21790 1.22497 1.19002 1.20417 0.79296 0.95680 1.03169 0.87296 0.87469 0.88439 0.90012 0.88682 0.92772 0.90805 0.89033 0.91563 0.97998 0.96317 0.94445 0.89656 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.25 71.24 0.73 -0.20 16 2 C 0.07 1.30 7.79 45.18 0.35 1.65 16 3 N -0.36 -7.22 12.22 -51.80 -0.63 -7.85 16 4 O 0.34 7.02 11.65 140.86 1.64 8.66 16 5 N -0.32 -6.99 8.98 -52.06 -0.47 -7.45 16 6 C -0.06 -1.32 7.13 44.29 0.32 -1.00 16 7 C 0.60 15.56 7.63 86.91 0.66 16.22 16 8 O -0.53 -15.20 15.30 -3.74 -0.06 -15.26 16 9 N -0.58 -15.36 3.14 -837.56 -2.63 -17.99 16 10 C 0.12 3.33 6.19 86.54 0.54 3.87 16 11 C -0.12 -4.16 5.21 30.59 0.16 -4.00 16 12 C 0.16 6.25 3.20 44.39 0.14 6.39 16 13 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 14 C -0.09 -2.81 2.75 -11.91 -0.03 -2.84 16 15 H 0.08 2.31 8.11 -2.39 -0.02 2.29 16 16 C -0.12 -4.03 6.40 31.39 0.20 -3.83 16 17 C 0.18 8.48 5.38 86.72 0.47 8.95 16 18 N -0.61 -30.04 3.14 -675.36 -2.12 -32.16 16 19 C -0.23 -12.68 9.68 84.03 0.81 -11.86 16 20 H 0.08 4.28 7.34 -2.91 -0.02 4.25 16 21 C -0.06 -3.53 5.34 84.86 0.45 -3.08 16 22 N -0.95 -56.33 10.81 21.65 0.23 -56.09 16 23 Si 0.97 45.17 29.58 68.60 2.03 47.20 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 C 0.14 3.58 4.41 85.68 0.38 3.96 16 28 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.37 7.24 -2.39 -0.02 1.35 16 31 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.09 2.48 7.20 -2.39 -0.02 2.46 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.55 7.49 -2.39 -0.02 2.54 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.07 2.18 7.69 -2.39 -0.02 2.16 16 37 H 0.00 0.11 7.81 -2.38 -0.02 0.09 16 38 H 0.02 1.00 7.31 -2.39 -0.02 0.98 16 39 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.09 2.02 6.43 -2.38 -0.02 2.00 16 41 H 0.07 1.79 6.78 -2.39 -0.02 1.78 16 Total: -1.00 -64.90 328.07 4.23 -60.67 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.05 Total: 6.04 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.18 Total: 14.24 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.61 Total: -121.56 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 1.58 Total: -6.59 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.90 4.23 -60.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036910694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.594 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds