Wall clock time and date at job start Tue Mar 31 2020 08:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35281 * 116.99920 * 2 1 4 4 N 1.32776 * 120.60999 * 0.02562 * 3 2 1 5 5 C 1.31727 * 120.86641 * 179.97438 * 4 3 2 6 6 C 1.50698 * 118.89893 * 180.02562 * 5 4 3 7 7 N 1.31931 * 122.19932 * 0.02562 * 5 4 3 8 8 C 1.32190 * 121.13910 * 359.65845 * 7 5 4 9 9 C 1.39797 * 118.98045 * 0.61372 * 8 7 5 10 10 C 1.47535 * 120.97942 * 179.69504 * 9 8 7 11 11 O 1.21592 * 119.99978 * 179.71956 * 10 9 8 12 12 N 1.34769 * 120.00368 * 359.72484 * 10 9 8 13 13 C 1.46502 * 120.00658 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47668 * 179.97438 * 13 12 10 15 15 H 1.09003 * 112.96563 * 306.68303 * 14 13 12 16 16 C 1.53942 * 113.77155 * 174.99914 * 14 13 12 17 17 C 1.53950 * 86.29174 * 222.09770 * 16 14 13 18 18 N 1.47582 * 86.11641 * 23.60667 * 17 16 14 19 19 C 1.36935 * 134.48993 * 155.36255 * 18 17 16 20 20 H 1.08000 * 119.99734 * 187.05740 * 19 18 17 21 21 C 1.38808 * 119.99999 * 7.05583 * 19 18 17 22 22 N 1.31615 * 120.00419 * 7.61169 * 21 19 18 23 23 Si 1.86807 * 119.99792 * 187.61024 * 21 19 18 24 24 H 1.48505 * 109.46959 * 94.81153 * 23 21 19 25 25 H 1.48498 * 109.46854 * 214.81008 * 23 21 19 26 26 H 1.48491 * 109.47083 * 334.81289 * 23 21 19 27 27 H 1.09006 * 109.46766 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47009 * 299.99285 * 1 2 3 29 29 H 1.08997 * 109.47040 * 60.00313 * 1 2 3 30 30 H 1.08997 * 109.47771 * 89.99652 * 6 5 4 31 31 H 1.09000 * 109.47363 * 210.00278 * 6 5 4 32 32 H 1.09005 * 109.47185 * 329.99383 * 6 5 4 33 33 H 1.08005 * 120.50803 * 180.30889 * 8 7 5 34 34 H 0.97003 * 120.00067 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.46696 * 300.00220 * 13 12 10 36 36 H 1.09005 * 109.46681 * 59.99376 * 13 12 10 37 37 H 1.08999 * 113.74139 * 336.44384 * 16 14 13 38 38 H 1.08997 * 113.74196 * 107.64327 * 16 14 13 39 39 H 1.08997 * 113.77081 * 137.90686 * 17 16 14 40 40 H 1.09004 * 113.76391 * 269.19500 * 17 16 14 41 41 H 0.96995 * 120.00359 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 1.3319 2.3265 0.0005 5 6 1.9247 3.5029 0.0010 6 6 1.0742 4.7470 0.0022 7 7 3.2380 3.6284 0.0005 8 6 4.0261 2.5671 0.0063 9 6 3.4481 1.2942 -0.0002 10 6 4.2858 0.0798 -0.0009 11 8 3.7643 -1.0186 -0.0014 12 7 5.6292 0.1877 -0.0009 13 6 6.4611 -1.0181 -0.0011 14 6 7.9381 -0.6189 -0.0017 15 1 8.1919 0.0707 -0.8068 16 6 8.9034 -1.8118 0.1209 17 6 9.7055 -0.9338 1.0985 18 7 8.4425 -0.2037 1.3217 19 6 7.9404 0.5544 2.3455 20 1 6.9171 0.8981 2.3114 21 6 8.7466 0.8812 3.4272 22 7 10.0305 0.5930 3.4019 23 14 8.0091 1.7302 4.9189 24 1 7.6516 0.7135 5.9406 25 1 9.0000 2.6779 5.4891 26 1 6.7897 2.4738 4.5127 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.8694 5.0463 1.0301 31 1 1.6035 5.5495 -0.5114 32 1 0.1342 4.5450 -0.5115 33 1 5.1000 2.6816 0.0108 34 1 6.0454 1.0640 -0.0008 35 1 6.2444 -1.6090 0.8888 36 1 6.2443 -1.6089 -0.8911 37 1 8.4574 -2.6912 0.5856 38 1 9.4353 -2.0426 -0.8021 39 1 10.0644 -1.4696 1.9772 40 1 10.4809 -0.3371 0.6180 41 1 10.5939 0.8217 4.1576 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038317308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:30 Heat of formation + Delta-G solvation = 10.434827 kcal Electronic energy + Delta-G solvation = -25132.503103 eV Core-core repulsion = 21435.295758 eV Total energy + Delta-G solvation = -3697.207346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58668 -40.57653 -39.75148 -39.44897 -35.65689 -34.71558 -34.17981 -33.83581 -30.50720 -29.84102 -29.18590 -28.14178 -25.27098 -25.13176 -24.73281 -23.57811 -21.88040 -20.88427 -19.78894 -19.25028 -18.86984 -18.15632 -17.55287 -17.07837 -16.81146 -16.15932 -16.06123 -15.81868 -15.68236 -15.60292 -15.54608 -14.94237 -14.70236 -14.21990 -13.67370 -13.45235 -13.28475 -13.23473 -13.08908 -12.99021 -12.69560 -12.67092 -12.62533 -12.56423 -12.25663 -11.87425 -11.50467 -11.46201 -11.36536 -10.90136 -10.78600 -10.65265 -10.35847 -9.97191 -8.86820 -7.88036 -5.17144 -0.70416 -0.10493 1.42696 1.45070 1.51682 1.70911 1.73617 2.06397 2.47505 2.59014 2.73500 2.86656 3.33577 3.38142 3.50822 3.60510 3.91026 4.02352 4.12357 4.17854 4.31257 4.31730 4.39008 4.60617 4.66393 4.69549 4.70615 4.75164 4.86256 4.89477 5.09288 5.13368 5.23119 5.34319 5.41180 5.56349 5.60500 5.77226 5.94128 5.97896 6.46467 6.80573 6.96819 7.13645 7.66799 8.62497 9.30354 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.004279 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.688020 B = 6541.639783 C = 7639.008087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.288 6.288 3 C 0.403 3.597 4 N -0.580 5.580 5 C 0.368 3.632 6 C -0.085 4.085 7 N -0.552 5.552 8 C 0.225 3.775 9 C -0.288 4.288 10 C 0.568 3.432 11 O -0.562 6.562 12 N -0.705 5.705 13 C 0.134 3.866 14 C 0.131 3.869 15 H 0.073 0.927 16 C -0.130 4.130 17 C 0.157 3.843 18 N -0.628 5.628 19 C -0.211 4.211 20 H 0.084 0.916 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.959 3.041 24 H -0.297 1.297 25 H -0.296 1.296 26 H -0.268 1.268 27 H 0.122 0.878 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.197 0.803 34 H 0.407 0.593 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 4.492 -11.190 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.189 6.189 3 C 0.215 3.785 4 N -0.312 5.312 5 C 0.103 3.897 6 C -0.143 4.143 7 N -0.271 5.271 8 C 0.060 3.940 9 C -0.298 4.298 10 C 0.354 3.646 11 O -0.442 6.442 12 N -0.356 5.356 13 C 0.010 3.990 14 C 0.025 3.975 15 H 0.090 0.910 16 C -0.168 4.168 17 C 0.032 3.968 18 N -0.354 5.354 19 C -0.340 4.340 20 H 0.101 0.899 21 C -0.258 4.258 22 N -0.602 5.602 23 Si 0.789 3.211 24 H -0.225 1.225 25 H -0.222 1.222 26 H -0.193 1.193 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.213 0.787 34 H 0.243 0.757 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.902 4.317 -10.913 21.406 hybrid contribution 0.675 0.080 1.316 1.481 sum -17.227 4.397 -9.597 20.204 Atomic orbital electron populations 1.23321 0.74890 1.05302 1.03237 1.86512 1.25085 1.22942 1.84377 1.20299 0.88524 0.85758 0.83879 1.68178 1.40709 0.98370 1.23958 1.24128 0.88536 0.93170 0.83865 1.20858 0.98299 0.89561 1.05600 1.68434 1.05935 1.33238 1.19530 1.23742 1.01769 0.85077 0.83429 1.20910 0.92575 0.96903 1.19364 1.17746 0.82359 0.87910 0.76552 1.90773 1.73593 1.28354 1.51441 1.45777 1.04931 1.11082 1.73810 1.21607 0.89533 0.86562 1.01305 1.22685 0.91579 0.95000 0.88225 0.91008 1.23564 0.97065 0.96391 0.99824 1.22039 0.89189 0.90729 0.94876 1.46510 1.16469 1.59081 1.13350 1.19270 0.95005 1.23626 0.96108 0.89852 1.25439 0.95808 1.03028 1.01552 1.69988 1.04548 1.54404 1.31216 0.85340 0.77463 0.77790 0.80489 1.22472 1.22236 1.19288 0.86021 0.91450 0.90960 0.87573 0.87668 0.87835 0.78669 0.75695 0.93583 0.89771 0.90128 0.88653 0.95538 0.95791 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.41 113.37 1.18 1.70 16 2 O -0.29 -8.69 8.73 -65.44 -0.57 -9.26 16 3 C 0.40 12.07 7.54 85.17 0.64 12.71 16 4 N -0.58 -14.70 9.26 -299.85 -2.78 -17.48 16 5 C 0.37 8.32 7.64 138.73 1.06 9.38 16 6 C -0.09 -1.08 10.31 71.24 0.73 -0.35 16 7 N -0.55 -13.87 10.31 -186.94 -1.93 -15.80 16 8 C 0.23 5.87 10.80 85.02 0.92 6.79 16 9 C -0.29 -8.82 5.92 -19.83 -0.12 -8.93 16 10 C 0.57 19.82 7.78 86.70 0.67 20.49 16 11 O -0.56 -23.17 15.32 16.21 0.25 -22.93 16 12 N -0.71 -22.78 5.47 -466.28 -2.55 -25.33 16 13 C 0.13 4.54 5.54 86.38 0.48 5.02 16 14 C 0.13 4.61 4.33 45.09 0.20 4.81 16 15 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.13 -4.29 7.86 31.25 0.25 -4.04 16 17 C 0.16 7.05 7.31 86.48 0.63 7.68 16 18 N -0.63 -29.57 3.56 -694.08 -2.47 -32.05 16 19 C -0.21 -11.13 10.49 84.03 0.88 -10.25 16 20 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 21 C -0.07 -3.64 5.49 84.86 0.47 -3.17 16 22 N -0.95 -56.74 11.76 21.65 0.25 -56.49 16 23 Si 0.96 45.76 29.56 68.60 2.03 47.79 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H 0.12 1.80 8.14 -2.38 -0.02 1.79 16 28 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.20 4.24 6.53 -2.91 -0.02 4.22 16 34 H 0.41 11.92 6.60 -92.71 -0.61 11.31 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 37 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 38 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.03 1.34 7.69 -2.39 -0.02 1.33 16 40 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -74.16 351.26 0.67 -73.49 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.44 Total: 16.21 kcal Atomic # 6 Polarization: 33.84 SS G_CDS: 7.99 Total: 41.83 kcal Atomic # 7 Polarization: -137.67 SS G_CDS: -9.47 Total: -147.14 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.32 Total: -32.18 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.16 0.67 -73.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038317308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.926 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds