Wall clock time and date at job start Tue Mar 31 2020 08:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32086 * 119.85019 * 2 1 4 4 C 1.32608 * 120.00596 * 180.02562 * 3 2 1 5 5 O 1.35430 * 120.14723 * 179.97438 * 4 3 2 6 6 C 1.40218 * 119.70903 * 359.97438 * 4 3 2 7 7 C 1.47833 * 120.15217 * 180.02562 * 6 4 3 8 8 O 1.21557 * 119.99924 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00235 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99871 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.78530 * 303.72872 * 11 10 9 13 13 C 1.53499 * 113.46472 * 172.93553 * 11 10 9 14 14 C 1.53749 * 83.25991 * 218.98716 * 13 11 10 15 15 N 1.47072 * 113.46180 * 74.50654 * 11 10 9 16 16 C 1.36931 * 136.06174 * 321.86155 * 15 11 10 17 17 H 1.08002 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 11 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 N 1.33001 * 119.70051 * 0.28088 * 6 4 3 25 25 C 1.31761 * 119.98881 * 359.41701 * 24 6 4 26 26 C 1.50700 * 119.85212 * 180.29844 * 25 24 6 27 27 H 1.09009 * 109.47099 * 89.99710 * 1 2 3 28 28 H 1.09001 * 109.47442 * 209.99678 * 1 2 3 29 29 H 1.09007 * 109.47281 * 330.00327 * 1 2 3 30 30 H 0.96701 * 114.00059 * 270.01605 * 5 4 3 31 31 H 0.97001 * 119.99969 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.46704 * 59.99925 * 10 9 7 33 33 H 1.08998 * 109.46915 * 299.99782 * 10 9 7 34 34 H 1.09000 * 114.20984 * 332.74702 * 13 11 10 35 35 H 1.09004 * 114.19718 * 105.37227 * 13 11 10 36 36 H 1.09004 * 113.47201 * 271.50865 * 14 13 11 37 37 H 1.09001 * 113.55046 * 140.98942 * 14 13 11 38 38 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47176 * 270.30470 * 26 25 24 40 40 H 1.08996 * 109.46868 * 30.30518 * 26 25 24 41 41 H 1.09007 * 109.46897 * 150.30700 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1456 0.0000 4 6 3.4905 1.1492 -0.0005 5 8 4.1675 2.3222 -0.0010 6 6 4.1887 -0.0667 -0.0005 7 6 5.6671 -0.0742 -0.0005 8 8 6.2801 0.9755 -0.0010 9 7 6.3351 -1.2447 -0.0010 10 6 7.8001 -1.2520 -0.0016 11 6 8.3029 -2.6970 -0.0015 12 1 7.9149 -3.2789 0.8346 13 6 9.8234 -2.8152 -0.1752 14 6 9.4476 -4.0226 -1.0496 15 7 8.1544 -3.3688 -1.3014 16 6 7.2205 -3.3836 -2.3026 17 1 6.3260 -2.7847 -2.2156 18 6 7.4228 -4.1693 -3.4290 19 7 8.5122 -4.9004 -3.5343 20 14 6.1483 -4.1902 -4.7945 21 1 6.5974 -5.1022 -5.8769 22 1 4.8504 -4.6668 -4.2530 23 1 5.9838 -2.8183 -5.3389 24 7 3.5150 -1.2135 -0.0057 25 6 2.1975 -1.2033 0.0009 26 6 1.4372 -2.5045 0.0018 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8901 0.5138 30 1 4.3636 2.6628 -0.8846 31 1 5.8460 -2.0823 -0.0010 32 1 8.1663 -0.7401 0.8884 33 1 8.1656 -0.7398 -0.8916 34 1 10.2766 -1.9876 -0.7210 35 1 10.3588 -3.0731 0.7386 36 1 9.3613 -4.9540 -0.4899 37 1 10.0646 -4.1225 -1.9426 38 1 8.6534 -5.4498 -4.3212 39 1 1.2536 -2.8187 -1.0256 40 1 2.0226 -3.2668 0.5159 41 1 0.4856 -2.3689 0.5159 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038394502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:50 Heat of formation + Delta-G solvation = 32.170578 kcal Electronic energy + Delta-G solvation = -25277.566913 eV Core-core repulsion = 21581.302100 eV Total energy + Delta-G solvation = -3696.264813 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63010 -39.24462 -38.12178 -37.60866 -34.85561 -33.98483 -33.43192 -32.20867 -29.45325 -28.21659 -27.90232 -27.06181 -23.89992 -23.47121 -23.24814 -21.84810 -20.48770 -19.31227 -18.86897 -18.38048 -17.62820 -16.55062 -16.26118 -15.45027 -15.26777 -14.97172 -14.64391 -14.46240 -14.15902 -13.79793 -13.47816 -13.38120 -13.32551 -13.10300 -12.92814 -12.53872 -12.12053 -11.90722 -11.86020 -11.77079 -11.53489 -11.11917 -11.06790 -10.97861 -10.78373 -10.60136 -10.18559 -9.91691 -9.83746 -9.37254 -9.10544 -9.03292 -8.81681 -8.55163 -6.90588 -5.77334 -3.09680 0.18463 0.77572 2.74152 3.03649 3.36304 3.40267 3.41831 3.42339 3.62074 3.79045 4.01745 4.39060 4.43626 4.63243 4.89034 4.96027 5.08630 5.20289 5.22549 5.38058 5.39189 5.47060 5.54876 5.58132 5.68896 5.75144 5.91371 6.05845 6.09537 6.30546 6.39574 6.59563 6.69687 6.83594 6.88814 7.22415 7.35632 7.38438 7.42711 7.57612 7.87938 7.97207 8.44520 9.02908 9.69717 10.62310 11.39818 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004675 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.848357 B = 5987.931239 C = 7226.469216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.123 3.877 3 N -0.464 5.464 4 C 0.318 3.682 5 O -0.452 6.452 6 C 0.021 3.979 7 C 0.568 3.432 8 O -0.527 6.527 9 N -0.690 5.690 10 C 0.120 3.880 11 C 0.126 3.874 12 H 0.049 0.951 13 C -0.160 4.160 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.212 4.212 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.285 1.285 23 H -0.286 1.286 24 N -0.390 5.390 25 C 0.068 3.932 26 C -0.103 4.103 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.407 0.593 31 H 0.413 0.587 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 6.786 8.239 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.020 4.020 3 N -0.189 5.189 4 C 0.136 3.864 5 O -0.258 6.258 6 C -0.123 4.123 7 C 0.350 3.650 8 O -0.403 6.403 9 N -0.340 5.340 10 C -0.004 4.004 11 C 0.019 3.981 12 H 0.066 0.934 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.326 5.326 16 C -0.339 4.339 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.738 3.262 21 H -0.215 1.215 22 H -0.212 1.212 23 H -0.213 1.213 24 N -0.109 5.109 25 C -0.076 4.076 26 C -0.161 4.161 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.267 0.733 31 H 0.249 0.751 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.733 7.452 8.476 17.015 hybrid contribution -0.904 -0.396 -1.273 1.611 sum -13.637 7.056 7.203 16.960 Atomic orbital electron populations 1.20892 0.87191 1.04413 1.04018 1.22221 0.98382 0.87662 0.93691 1.67925 1.08313 1.30231 1.12402 1.19940 0.86771 0.86549 0.93164 1.84726 1.72735 1.34413 1.33943 1.22567 0.96542 0.89464 1.03708 1.17443 0.84508 0.84802 0.78230 1.90798 1.67734 1.31343 1.50436 1.45840 1.08234 1.08357 1.71539 1.21913 0.77969 0.98969 1.01561 1.22430 0.94101 0.90769 0.90841 0.93367 1.23704 0.94771 1.01495 0.99950 1.22084 0.87427 0.91635 0.96259 1.45708 1.22184 1.50308 1.14433 1.18813 0.98697 1.22167 0.94237 0.90285 1.24749 0.97907 0.99332 0.98321 1.69817 1.26209 1.31378 1.29164 0.86274 0.80775 0.77336 0.81843 1.21523 1.21192 1.21280 1.68256 1.08417 1.27959 1.06250 1.22168 0.90057 0.97048 0.98309 1.20809 0.99107 0.92108 1.04072 0.89305 0.89303 0.89851 0.73264 0.75095 0.91927 0.90759 0.90155 0.92319 0.95742 0.90895 0.93660 0.89487 0.89594 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.78 36.01 0.35 -0.38 16 2 C 0.12 1.41 6.79 -82.30 -0.56 0.85 16 3 N -0.46 -6.43 10.44 -9.02 -0.09 -6.53 16 4 C 0.32 4.88 7.78 -16.47 -0.13 4.75 16 5 O -0.45 -6.61 11.64 -39.84 -0.46 -7.07 16 6 C 0.02 0.34 6.77 -82.69 -0.56 -0.22 16 7 C 0.57 10.45 7.80 -12.33 -0.10 10.35 16 8 O -0.53 -10.56 15.17 -16.54 -0.25 -10.81 16 9 N -0.69 -12.67 5.32 -61.25 -0.33 -12.99 16 10 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 11 C 0.13 2.46 4.10 -72.39 -0.30 2.16 16 12 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.16 -2.91 8.04 -26.08 -0.21 -3.12 16 14 C 0.15 3.46 7.41 -8.37 -0.06 3.40 16 15 N -0.60 -14.68 3.65 -176.82 -0.65 -15.33 16 16 C -0.21 -5.72 10.55 -15.06 -0.16 -5.87 16 17 H 0.08 2.08 7.50 -52.49 -0.39 1.69 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -26.91 11.50 55.49 0.64 -26.28 16 20 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 N -0.39 -5.98 9.62 -5.80 -0.06 -6.04 16 25 C 0.07 0.83 6.78 -82.44 -0.56 0.27 16 26 C -0.10 -0.87 9.77 36.01 0.35 -0.51 16 27 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.09 0.39 5.93 -51.93 -0.31 0.08 16 29 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.41 4.29 9.06 45.56 0.41 4.70 16 31 H 0.41 7.64 7.72 -40.82 -0.31 7.33 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.45 8.12 -51.93 -0.42 1.02 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 1.86 7.11 -51.93 -0.37 1.49 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -34.11 347.78 -7.67 -41.78 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.64 Total: 7.39 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -2.04 Total: 13.59 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.48 Total: -67.16 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.71 Total: -17.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.11 -7.67 -41.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038394502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.949 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds