Wall clock time and date at job start Tue Mar 31 2020 08:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32086 * 119.85019 * 2 1 4 4 C 1.32608 * 120.00596 * 180.02562 * 3 2 1 5 5 O 1.35430 * 120.14723 * 179.97438 * 4 3 2 6 6 C 1.40218 * 119.70903 * 359.97438 * 4 3 2 7 7 C 1.47833 * 120.15217 * 180.02562 * 6 4 3 8 8 O 1.21557 * 119.99924 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00235 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99871 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.78530 * 303.72872 * 11 10 9 13 13 C 1.53499 * 113.46472 * 172.93553 * 11 10 9 14 14 C 1.53749 * 83.25991 * 218.98716 * 13 11 10 15 15 N 1.47072 * 113.46180 * 74.50654 * 11 10 9 16 16 C 1.36931 * 136.06174 * 321.86155 * 15 11 10 17 17 H 1.08002 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 11 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 N 1.33001 * 119.70051 * 0.28088 * 6 4 3 25 25 C 1.31761 * 119.98881 * 359.41701 * 24 6 4 26 26 C 1.50700 * 119.85212 * 180.29844 * 25 24 6 27 27 H 1.09009 * 109.47099 * 89.99710 * 1 2 3 28 28 H 1.09001 * 109.47442 * 209.99678 * 1 2 3 29 29 H 1.09007 * 109.47281 * 330.00327 * 1 2 3 30 30 H 0.96701 * 114.00059 * 270.01605 * 5 4 3 31 31 H 0.97001 * 119.99969 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.46704 * 59.99925 * 10 9 7 33 33 H 1.08998 * 109.46915 * 299.99782 * 10 9 7 34 34 H 1.09000 * 114.20984 * 332.74702 * 13 11 10 35 35 H 1.09004 * 114.19718 * 105.37227 * 13 11 10 36 36 H 1.09004 * 113.47201 * 271.50865 * 14 13 11 37 37 H 1.09001 * 113.55046 * 140.98942 * 14 13 11 38 38 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47176 * 270.30470 * 26 25 24 40 40 H 1.08996 * 109.46868 * 30.30518 * 26 25 24 41 41 H 1.09007 * 109.46897 * 150.30700 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1456 0.0000 4 6 3.4905 1.1492 -0.0005 5 8 4.1675 2.3222 -0.0010 6 6 4.1887 -0.0667 -0.0005 7 6 5.6671 -0.0742 -0.0005 8 8 6.2801 0.9755 -0.0010 9 7 6.3351 -1.2447 -0.0010 10 6 7.8001 -1.2520 -0.0016 11 6 8.3029 -2.6970 -0.0015 12 1 7.9149 -3.2789 0.8346 13 6 9.8234 -2.8152 -0.1752 14 6 9.4476 -4.0226 -1.0496 15 7 8.1544 -3.3688 -1.3014 16 6 7.2205 -3.3836 -2.3026 17 1 6.3260 -2.7847 -2.2156 18 6 7.4228 -4.1693 -3.4290 19 7 8.5122 -4.9004 -3.5343 20 14 6.1483 -4.1902 -4.7945 21 1 6.5974 -5.1022 -5.8769 22 1 4.8504 -4.6668 -4.2530 23 1 5.9838 -2.8183 -5.3389 24 7 3.5150 -1.2135 -0.0057 25 6 2.1975 -1.2033 0.0009 26 6 1.4372 -2.5045 0.0018 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8901 0.5138 30 1 4.3636 2.6628 -0.8846 31 1 5.8460 -2.0823 -0.0010 32 1 8.1663 -0.7401 0.8884 33 1 8.1656 -0.7398 -0.8916 34 1 10.2766 -1.9876 -0.7210 35 1 10.3588 -3.0731 0.7386 36 1 9.3613 -4.9540 -0.4899 37 1 10.0646 -4.1225 -1.9426 38 1 8.6534 -5.4498 -4.3212 39 1 1.2536 -2.8187 -1.0256 40 1 2.0226 -3.2668 0.5159 41 1 0.4856 -2.3689 0.5159 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038394502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:49 Heat of formation + Delta-G solvation = 4.256845 kcal Electronic energy + Delta-G solvation = -25278.777343 eV Core-core repulsion = 21581.302100 eV Total energy + Delta-G solvation = -3697.475243 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.67911 -40.68853 -39.69469 -38.74988 -35.93631 -35.42487 -34.35540 -34.20725 -30.43334 -29.91021 -29.20982 -28.27675 -25.39034 -24.89548 -24.36169 -23.30099 -21.85161 -21.01892 -19.98093 -19.45857 -19.06156 -18.25830 -17.37974 -17.05971 -16.87409 -16.25606 -15.86393 -15.83710 -15.61744 -15.13375 -14.83716 -14.67871 -14.23606 -13.97344 -13.93218 -13.68263 -13.40725 -13.27155 -12.98458 -12.95492 -12.88458 -12.71694 -12.61601 -12.50943 -12.35491 -12.02383 -11.87292 -11.65658 -11.50223 -11.03697 -10.83888 -10.25351 -10.18972 -9.90147 -8.89143 -7.87349 -5.18890 -0.87848 -0.24797 1.41216 1.43639 1.49771 1.53030 1.86390 2.24799 2.45527 2.48997 2.75618 3.07115 3.33089 3.39358 3.50347 3.73790 3.88939 3.96125 3.98932 4.12646 4.32967 4.54954 4.60626 4.68238 4.68587 4.75749 4.83874 4.88570 4.94255 5.06094 5.07503 5.08444 5.31973 5.35662 5.41576 5.58920 5.73555 5.89279 5.97540 6.27908 6.42293 6.53176 6.94216 7.02749 7.63977 8.63804 9.29856 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004675 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.848357 B = 5987.931239 C = 7226.469216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.136 3.864 3 N -0.477 5.477 4 C 0.311 3.689 5 O -0.464 6.464 6 C -0.012 4.012 7 C 0.566 3.434 8 O -0.552 6.552 9 N -0.692 5.692 10 C 0.129 3.871 11 C 0.131 3.869 12 H 0.066 0.934 13 C -0.132 4.132 14 C 0.143 3.857 15 N -0.628 5.628 16 C -0.206 4.206 17 H 0.080 0.920 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.965 3.035 21 H -0.294 1.294 22 H -0.274 1.274 23 H -0.286 1.286 24 N -0.412 5.412 25 C 0.065 3.935 26 C -0.103 4.103 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.420 0.580 31 H 0.411 0.589 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.023 0.977 37 H 0.038 0.962 38 H 0.246 0.754 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.800 6.926 9.382 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.008 4.008 3 N -0.202 5.202 4 C 0.130 3.870 5 O -0.273 6.273 6 C -0.153 4.153 7 C 0.351 3.649 8 O -0.430 6.430 9 N -0.341 5.341 10 C 0.004 3.996 11 C 0.025 3.975 12 H 0.084 0.916 13 C -0.170 4.170 14 C 0.018 3.982 15 N -0.354 5.354 16 C -0.334 4.334 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.794 3.206 21 H -0.221 1.221 22 H -0.199 1.199 23 H -0.213 1.213 24 N -0.131 5.131 25 C -0.081 4.081 26 C -0.160 4.160 27 H 0.127 0.873 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.282 0.718 31 H 0.247 0.753 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.338 7.629 9.647 19.660 hybrid contribution -0.225 -0.433 -1.561 1.636 sum -15.563 7.196 8.086 18.957 Atomic orbital electron populations 1.21140 0.83343 1.06212 1.05679 1.23093 1.00601 0.86671 0.90415 1.68068 1.07434 1.31415 1.13330 1.19984 0.87447 0.86255 0.93303 1.84667 1.73001 1.34369 1.35275 1.22211 0.95430 0.90503 1.07124 1.17755 0.85611 0.84255 0.77302 1.90762 1.68671 1.31960 1.51621 1.45825 1.08082 1.08436 1.71802 1.21747 0.78333 0.98124 1.01365 1.22577 0.95130 0.90840 0.88979 0.91626 1.23520 0.94290 0.98798 1.00422 1.22102 0.86761 0.93506 0.95847 1.46019 1.22277 1.51145 1.15999 1.19087 0.98762 1.20757 0.94811 0.90229 1.25485 0.99838 1.00038 1.00703 1.69997 1.27982 1.32704 1.29466 0.85345 0.79116 0.76919 0.79190 1.22066 1.19940 1.21316 1.68216 1.10162 1.27669 1.07052 1.22914 0.89214 0.99093 0.96844 1.21005 1.00113 0.89765 1.05093 0.87335 0.86143 0.89401 0.71781 0.75255 0.89775 0.93233 0.90026 0.88113 0.95948 0.94366 0.94525 0.88533 0.90319 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.78 71.24 0.70 -0.28 16 2 C 0.14 2.75 6.79 42.64 0.29 3.04 16 3 N -0.48 -12.61 10.44 -295.26 -3.08 -15.69 16 4 C 0.31 9.52 7.78 85.06 0.66 10.18 16 5 O -0.46 -13.80 11.64 -66.36 -0.77 -14.57 16 6 C -0.01 -0.40 6.77 41.99 0.28 -0.11 16 7 C 0.57 21.19 7.80 86.78 0.68 21.86 16 8 O -0.55 -22.57 15.17 17.00 0.26 -22.32 16 9 N -0.69 -25.48 5.32 -465.97 -2.48 -27.96 16 10 C 0.13 4.68 5.52 86.38 0.48 5.16 16 11 C 0.13 4.95 4.10 41.79 0.17 5.12 16 12 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 13 C -0.13 -4.55 8.04 31.01 0.25 -4.30 16 14 C 0.14 6.59 7.41 83.26 0.62 7.21 16 15 N -0.63 -30.88 3.65 -713.34 -2.60 -33.48 16 16 C -0.21 -11.23 10.55 84.03 0.89 -10.34 16 17 H 0.08 4.23 7.50 -2.91 -0.02 4.21 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 19 N -0.95 -57.36 11.50 21.65 0.25 -57.11 16 20 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 21 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 N -0.41 -12.38 9.62 -172.25 -1.66 -14.04 16 25 C 0.06 1.44 6.78 42.69 0.29 1.73 16 26 C -0.10 -1.36 9.77 71.24 0.70 -0.67 16 27 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.12 0.36 5.93 -2.39 -0.01 0.35 16 29 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.42 9.15 9.06 -74.06 -0.67 8.48 16 31 H 0.41 15.28 7.72 -92.71 -0.72 14.56 16 32 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 2.82 8.12 -2.39 -0.02 2.81 16 35 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.04 2.01 7.11 -2.39 -0.02 1.99 16 38 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.12 0.64 5.93 -2.38 -0.01 0.62 16 Total: -1.00 -76.59 347.78 -1.90 -78.48 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.30 Total: 23.45 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: 6.46 Total: 35.22 kcal Atomic # 7 Polarization: -138.71 SS G_CDS: -9.57 Total: -148.29 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.51 Total: -36.89 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.59 -1.90 -78.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038394502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.740 kcal (2) G-P(sol) polarization free energy of solvation -76.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds