Wall clock time and date at job start Tue Mar 31 2020 08:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32089 * 119.85348 * 2 1 4 4 C 1.32614 * 120.00497 * 179.68863 * 3 2 1 5 5 O 1.35429 * 120.14728 * 180.30511 * 4 3 2 6 6 C 1.40220 * 119.71039 * 0.56533 * 4 3 2 7 7 C 1.47827 * 120.15025 * 179.71162 * 6 4 3 8 8 O 1.21556 * 120.00284 * 359.72597 * 7 6 4 9 9 N 1.34783 * 120.00231 * 179.73068 * 7 6 4 10 10 C 1.46498 * 120.00109 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46763 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.78411 * 56.27850 * 11 10 9 13 13 C 1.53503 * 113.46305 * 187.05458 * 11 10 9 14 14 C 1.53502 * 83.33901 * 140.84911 * 13 11 10 15 15 N 1.47060 * 87.98821 * 333.93176 * 14 13 11 16 16 C 1.36937 * 136.06048 * 207.15747 * 15 14 13 17 17 H 1.08000 * 120.00353 * 179.97438 * 16 15 14 18 18 C 1.38809 * 119.99799 * 359.94873 * 16 15 14 19 19 N 1.31621 * 120.00016 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46888 * 59.99920 * 20 18 16 22 22 H 1.48491 * 109.47461 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46934 * 300.00290 * 20 18 16 24 24 N 1.32994 * 119.70131 * 359.43796 * 6 4 3 25 25 C 1.31767 * 119.99188 * 0.27547 * 24 6 4 26 26 C 1.50694 * 119.85558 * 180.02562 * 25 24 6 27 27 H 1.09004 * 109.47198 * 270.01979 * 1 2 3 28 28 H 1.09003 * 109.47062 * 30.01415 * 1 2 3 29 29 H 1.08999 * 109.47424 * 150.01855 * 1 2 3 30 30 H 0.96702 * 113.99738 * 270.26285 * 5 4 3 31 31 H 0.97002 * 119.99491 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47104 * 59.99659 * 10 9 7 33 33 H 1.09005 * 109.47052 * 299.99488 * 10 9 7 34 34 H 1.08997 * 114.20730 * 254.43225 * 13 11 10 35 35 H 1.08995 * 114.20536 * 27.26448 * 13 11 10 36 36 H 1.09007 * 113.46569 * 219.15062 * 14 13 11 37 37 H 1.09003 * 113.46708 * 88.71388 * 14 13 11 38 38 H 0.97003 * 119.99474 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47294 * 90.00160 * 26 25 24 40 40 H 1.08999 * 109.47221 * 209.99814 * 26 25 24 41 41 H 1.08996 * 109.47045 * 330.00166 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1644 1.1456 0.0000 4 6 3.4905 1.1491 0.0062 5 8 4.1676 2.3220 0.0125 6 6 4.1888 -0.0669 0.0008 7 6 5.6670 -0.0743 0.0012 8 8 6.2801 0.9754 0.0013 9 7 6.3351 -1.2448 0.0015 10 6 7.8001 -1.2521 0.0025 11 6 8.3028 -2.6972 0.0032 12 1 7.9152 -3.2794 -0.8327 13 6 9.8234 -2.8152 0.1772 14 6 9.4498 -4.0180 1.0548 15 7 8.1541 -3.3684 1.3033 16 6 7.2204 -3.3819 2.3049 17 1 6.3265 -2.7819 2.2180 18 6 7.4224 -4.1670 3.4316 19 7 8.5117 -4.8982 3.5375 20 14 6.1484 -4.1860 4.7976 21 1 4.8499 -4.6620 4.2567 22 1 6.5970 -5.0977 5.8804 23 1 5.9850 -2.8137 5.3411 24 7 3.5151 -1.2136 0.0008 25 6 2.1974 -1.2034 0.0003 26 6 1.4372 -2.5045 0.0009 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 4.3648 2.6670 -0.8691 31 1 5.8459 -2.0824 0.0018 32 1 8.1654 -0.7402 0.8928 33 1 8.1666 -0.7400 -0.8872 34 1 10.3587 -3.0770 -0.7354 35 1 10.2763 -1.9875 0.7229 36 1 10.0670 -4.1117 1.9484 37 1 9.3676 -4.9520 0.4989 38 1 8.6527 -5.4471 4.3247 39 1 1.2535 -2.8176 1.0287 40 1 0.4856 -2.3695 -0.5133 41 1 2.0225 -3.2675 -0.5123 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038394503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:53 Heat of formation + Delta-G solvation = 32.356221 kcal Electronic energy + Delta-G solvation = -25274.231960 eV Core-core repulsion = 21577.975197 eV Total energy + Delta-G solvation = -3696.256763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63181 -39.24673 -38.12970 -37.62040 -34.85744 -33.98611 -33.43521 -32.19535 -29.45519 -28.21396 -27.89884 -27.06583 -23.90081 -23.46157 -23.25184 -21.84766 -20.48886 -19.29820 -18.88404 -18.38585 -17.62803 -16.52065 -16.27568 -15.44818 -15.23781 -15.06572 -14.59626 -14.48120 -14.06299 -13.80043 -13.47160 -13.44504 -13.33802 -13.07129 -12.94320 -12.50780 -12.12838 -11.90685 -11.86739 -11.78601 -11.52459 -11.11094 -11.06097 -10.96902 -10.76257 -10.58803 -10.18361 -9.90448 -9.83103 -9.36174 -9.14217 -9.00446 -8.79989 -8.55312 -6.89310 -5.75814 -3.08159 0.18345 0.77584 2.73461 3.05414 3.35696 3.39006 3.43839 3.44508 3.65130 3.78929 4.01712 4.39047 4.45229 4.62912 4.88240 4.95939 5.09466 5.20577 5.22292 5.39146 5.40301 5.46244 5.55161 5.58235 5.68904 5.75114 5.91862 6.05235 6.08986 6.31241 6.39959 6.59647 6.70290 6.83732 6.88734 7.23439 7.35349 7.39369 7.42477 7.58849 7.87863 7.98764 8.44452 9.04636 9.71415 10.63395 11.41336 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.004676 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.905892 B = 5986.294028 C = 7238.452848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.123 3.877 3 N -0.464 5.464 4 C 0.317 3.683 5 O -0.450 6.450 6 C 0.021 3.979 7 C 0.567 3.433 8 O -0.527 6.527 9 N -0.690 5.690 10 C 0.120 3.880 11 C 0.127 3.873 12 H 0.049 0.951 13 C -0.160 4.160 14 C 0.152 3.848 15 N -0.600 5.600 16 C -0.212 4.212 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.285 1.285 24 N -0.390 5.390 25 C 0.068 3.932 26 C -0.103 4.103 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.405 0.595 31 H 0.413 0.587 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 6.787 -11.678 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.020 4.020 3 N -0.189 5.189 4 C 0.135 3.865 5 O -0.256 6.256 6 C -0.123 4.123 7 C 0.350 3.650 8 O -0.403 6.403 9 N -0.340 5.340 10 C -0.004 4.004 11 C 0.019 3.981 12 H 0.066 0.934 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.326 5.326 16 C -0.339 4.339 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.737 3.263 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.212 1.212 24 N -0.109 5.109 25 C -0.076 4.076 26 C -0.161 4.161 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.265 0.735 31 H 0.249 0.751 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.741 7.449 -10.739 18.252 hybrid contribution -0.897 -0.379 0.419 1.061 sum -13.639 7.070 -10.320 18.507 Atomic orbital electron populations 1.20887 0.87190 1.04359 1.04070 1.22221 0.98379 0.87670 0.93683 1.67928 1.08306 1.30227 1.12420 1.19951 0.86783 0.86541 0.93176 1.84772 1.72727 1.34346 1.33725 1.22572 0.96544 0.89456 1.03685 1.17444 0.84506 0.84805 0.78237 1.90797 1.67738 1.31345 1.50429 1.45841 1.08232 1.08359 1.71529 1.21917 0.77975 0.98991 1.01559 1.22427 0.94056 0.90748 0.90869 0.93368 1.23668 0.94798 1.01533 0.99950 1.22030 0.87400 0.91700 0.96265 1.45673 1.21998 1.50567 1.14394 1.18813 0.98736 1.22125 0.94259 0.90275 1.24742 0.97905 0.99312 0.98299 1.69816 1.26212 1.31409 1.29150 0.86280 0.80763 0.77398 0.81851 1.21182 1.21510 1.21210 1.68253 1.08413 1.27955 1.06263 1.22171 0.90055 0.97045 0.98301 1.20807 0.99087 0.92100 1.04105 0.89300 0.89858 0.89305 0.73519 0.75092 0.90756 0.91941 0.92299 0.90154 0.90954 0.95731 0.93668 0.89452 0.89790 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.78 36.00 0.35 -0.37 16 2 C 0.12 1.41 6.79 -82.30 -0.56 0.85 16 3 N -0.46 -6.43 10.44 -9.01 -0.09 -6.52 16 4 C 0.32 4.87 7.78 -16.47 -0.13 4.75 16 5 O -0.45 -6.58 11.64 -39.83 -0.46 -7.05 16 6 C 0.02 0.34 6.77 -82.70 -0.56 -0.22 16 7 C 0.57 10.45 7.80 -12.33 -0.10 10.35 16 8 O -0.53 -10.56 15.17 -16.54 -0.25 -10.81 16 9 N -0.69 -12.67 5.32 -61.25 -0.33 -12.99 16 10 C 0.12 2.21 5.52 -4.04 -0.02 2.19 16 11 C 0.13 2.47 4.10 -72.40 -0.30 2.17 16 12 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 13 C -0.16 -2.92 8.03 -26.21 -0.21 -3.13 16 14 C 0.15 3.48 7.39 -8.51 -0.06 3.42 16 15 N -0.60 -14.81 3.65 -177.00 -0.65 -15.45 16 16 C -0.21 -5.80 10.55 -15.06 -0.16 -5.96 16 17 H 0.08 2.13 7.50 -52.49 -0.39 1.73 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 19 N -0.92 -27.17 11.51 55.49 0.64 -26.53 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 N -0.39 -5.98 9.62 -5.80 -0.06 -6.04 16 25 C 0.07 0.83 6.78 -82.44 -0.56 0.27 16 26 C -0.10 -0.87 9.77 36.00 0.35 -0.51 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.38 5.93 -51.93 -0.31 0.07 16 30 H 0.40 3.97 9.06 45.56 0.41 4.38 16 31 H 0.41 7.64 7.72 -40.82 -0.32 7.33 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 36 H 0.07 1.86 7.12 -51.93 -0.37 1.49 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -34.71 347.78 -7.67 -42.38 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.64 Total: 6.80 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: -2.05 Total: 13.53 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.48 Total: -67.53 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.71 Total: -17.86 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.71 -7.67 -42.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038394503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.737 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds