Wall clock time and date at job start Tue Mar 31 2020 08:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31880 * 119.93374 * 2 1 4 4 N 1.28272 * 122.62510 * 179.97438 * 3 2 1 5 5 C 1.32485 * 122.21641 * 0.02562 * 4 3 2 6 6 O 1.35451 * 120.25272 * 180.02562 * 5 4 3 7 7 C 1.40453 * 119.49851 * 359.97438 * 5 4 3 8 8 C 1.47821 * 121.18277 * 179.97438 * 7 5 4 9 9 O 1.21552 * 119.99852 * 89.99408 * 8 7 5 10 10 N 1.34773 * 120.00054 * 270.00203 * 8 7 5 11 11 C 1.46500 * 120.00055 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47404 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.77601 * 303.72538 * 12 11 10 14 14 C 1.53495 * 113.47041 * 172.93944 * 12 11 10 15 15 C 1.53497 * 83.34454 * 219.15595 * 14 12 11 16 16 N 1.47066 * 113.46479 * 74.50242 * 12 11 10 17 17 C 1.36937 * 136.06113 * 321.64192 * 16 12 11 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 12 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 12 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47441 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47001 * 120.00359 * 21 19 17 24 24 H 1.48499 * 109.47209 * 240.00202 * 21 19 17 25 25 C 1.38475 * 119.92724 * 180.26364 * 2 1 3 26 26 C 1.50701 * 121.06377 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.47149 * 89.99567 * 1 2 3 28 28 H 1.08998 * 109.46678 * 209.99823 * 1 2 3 29 29 H 1.09002 * 109.46347 * 329.99829 * 1 2 3 30 30 H 0.96697 * 113.99896 * 269.97909 * 6 5 4 31 31 H 0.96999 * 120.00230 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47316 * 59.99433 * 11 10 8 33 33 H 1.09006 * 109.47204 * 299.99927 * 11 10 8 34 34 H 1.09006 * 114.20556 * 332.74032 * 14 12 11 35 35 H 1.08994 * 114.20812 * 105.36675 * 14 12 11 36 36 H 1.09007 * 113.46266 * 271.28548 * 15 14 12 37 37 H 1.08993 * 113.46849 * 140.85107 * 15 14 12 38 38 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 39 39 H 1.08995 * 109.47134 * 270.22546 * 26 25 2 40 40 H 1.08993 * 109.46934 * 30.22645 * 26 25 2 41 41 H 1.09001 * 109.46977 * 150.22332 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1652 1.1429 0.0000 4 7 3.4465 1.2031 0.0005 5 6 4.2046 0.1166 0.0005 6 8 5.5547 0.2266 0.0016 7 6 3.5979 -1.1501 0.0006 8 6 4.4078 -2.3867 0.0000 9 8 4.7413 -2.8952 1.0525 10 7 4.7766 -2.9502 -1.1674 11 6 5.5798 -4.1754 -1.1679 12 6 5.8581 -4.6023 -2.6106 13 1 4.9472 -4.7383 -3.1935 14 6 6.8366 -5.7796 -2.7218 15 6 7.3682 -4.9919 -3.9273 16 7 6.8654 -3.7688 -3.2839 17 6 7.1889 -2.4383 -3.3067 18 1 6.6228 -1.7348 -2.7144 19 6 8.2451 -1.9941 -4.0903 20 7 8.9353 -2.8517 -4.8118 21 14 8.6868 -0.1794 -4.1208 22 1 7.7654 0.5694 -3.2290 23 1 10.0839 -0.0021 -3.6497 24 1 8.5628 0.3370 -5.5075 25 6 2.1979 -1.2001 -0.0055 26 6 1.4671 -2.5180 -0.0122 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 5.9473 0.2586 -0.8815 31 1 4.5103 -2.5446 -2.0073 32 1 5.0350 -4.9672 -0.6537 33 1 6.5236 -3.9914 -0.6546 34 1 7.5400 -5.8560 -1.8925 35 1 6.3662 -6.7292 -2.9766 36 1 6.8595 -5.2319 -4.8610 37 1 8.4539 -5.0193 -4.0191 38 1 9.6731 -2.5413 -5.3597 39 1 1.2870 -2.8388 1.0138 40 1 0.5146 -2.4027 -0.5293 41 1 2.0712 -3.2659 -0.5259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038584118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:33 Heat of formation + Delta-G solvation = 37.643613 kcal Electronic energy + Delta-G solvation = -25613.176066 eV Core-core repulsion = 21917.148582 eV Total energy + Delta-G solvation = -3696.027484 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59350 -39.45872 -38.20351 -37.78013 -35.09227 -34.27579 -32.79639 -32.32220 -29.10716 -28.34727 -28.10294 -27.63201 -24.53049 -23.59659 -22.82611 -22.04252 -20.60678 -19.39529 -19.00641 -18.28494 -17.65663 -16.65087 -16.38120 -15.71541 -15.35977 -15.01196 -14.76266 -14.50356 -14.13301 -13.86964 -13.64649 -13.44512 -13.36425 -13.09493 -13.00920 -12.95545 -12.41301 -12.18205 -12.03767 -11.66063 -11.35408 -11.24447 -11.10679 -10.88285 -10.71594 -10.46458 -10.06870 -10.00559 -9.95093 -9.58896 -9.54501 -9.33648 -8.93321 -8.82898 -7.02333 -5.89034 -3.22383 0.32401 0.54845 2.47415 2.98233 3.16174 3.29805 3.30516 3.31916 3.38503 3.88767 4.15457 4.28166 4.33586 4.51684 4.72218 4.97105 5.06755 5.11141 5.16204 5.21499 5.26912 5.40604 5.44857 5.50175 5.55418 5.56553 5.70480 5.78032 5.90937 5.94005 6.19437 6.27743 6.47484 6.53686 6.66024 7.08796 7.25160 7.28003 7.46127 7.55549 7.84594 8.18611 8.46452 8.89075 9.57498 10.50250 11.27912 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.004961 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.001653 B = 5642.129072 C = 6900.715472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.054 3.946 3 N -0.207 5.207 4 N -0.255 5.255 5 C 0.293 3.707 6 O -0.466 6.466 7 C -0.142 4.142 8 C 0.569 3.431 9 O -0.525 6.525 10 N -0.701 5.701 11 C 0.120 3.880 12 C 0.127 3.873 13 H 0.049 0.951 14 C -0.160 4.160 15 C 0.151 3.849 16 N -0.601 5.601 17 C -0.218 4.218 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.914 5.914 21 Si 0.909 3.091 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.290 1.290 25 C -0.034 4.034 26 C -0.122 4.122 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.415 0.585 31 H 0.404 0.596 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.254 0.746 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.168 -1.452 5.968 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.091 4.091 3 N -0.053 5.053 4 N -0.107 5.107 5 C 0.108 3.892 6 O -0.273 6.273 7 C -0.157 4.157 8 C 0.352 3.648 9 O -0.401 6.401 10 N -0.351 5.351 11 C -0.004 4.004 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.199 4.199 15 C 0.026 3.974 16 N -0.327 5.327 17 C -0.345 4.345 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.560 5.560 21 Si 0.740 3.260 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.045 4.045 26 C -0.179 4.179 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.276 0.724 31 H 0.239 0.761 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.678 0.078 7.198 17.252 hybrid contribution 0.541 -0.185 -1.090 1.231 sum -15.137 -0.107 6.108 16.323 Atomic orbital electron populations 1.20706 0.86805 1.04320 1.03881 1.22745 0.99306 0.89318 0.97754 1.72818 1.00285 1.24360 1.07815 1.73056 0.99416 1.26434 1.11806 1.20888 0.86560 0.88112 0.93689 1.84727 1.12548 1.95073 1.34908 1.21459 0.94699 0.95788 1.03772 1.17623 0.79678 0.82738 0.84804 1.90815 1.55269 1.62798 1.31240 1.45990 1.53325 1.28110 1.07637 1.21950 0.94956 0.84365 0.99122 1.22431 0.93739 0.91357 0.90604 0.93418 1.23658 0.99086 0.95597 1.01558 1.22029 1.00315 0.83363 0.91708 1.45684 1.33185 1.03010 1.50817 1.18769 1.11945 0.80991 1.22802 0.90556 1.24786 0.98403 0.97766 0.99200 1.69828 1.22269 1.32479 1.31461 0.86124 0.78360 0.84240 0.77315 1.20629 1.21522 1.21721 1.21080 0.91557 0.97881 0.94005 1.20968 1.00735 0.92090 1.04145 0.89554 0.89920 0.89644 0.72410 0.76119 0.91875 0.90587 0.90129 0.92254 0.95703 0.90892 0.93574 0.89097 0.89405 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 9.42 36.01 0.34 -0.34 16 2 C 0.05 0.62 6.86 -82.48 -0.57 0.06 16 3 N -0.21 -3.03 11.40 33.56 0.38 -2.64 16 4 N -0.26 -4.21 11.52 30.73 0.35 -3.86 16 5 C 0.29 4.76 7.88 -16.44 -0.13 4.63 16 6 O -0.47 -7.68 13.09 -18.05 -0.24 -7.91 16 7 C -0.14 -2.12 5.69 -104.45 -0.59 -2.71 16 8 C 0.57 9.38 5.62 -12.34 -0.07 9.31 16 9 O -0.53 -10.42 17.11 5.32 0.09 -10.33 16 10 N -0.70 -10.92 5.33 -61.26 -0.33 -11.24 16 11 C 0.12 1.98 5.52 -4.04 -0.02 1.96 16 12 C 0.13 2.23 4.10 -72.40 -0.30 1.93 16 13 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -2.70 8.03 -26.22 -0.21 -2.91 16 15 C 0.15 3.27 7.40 -8.51 -0.06 3.21 16 16 N -0.60 -13.68 3.65 -177.00 -0.65 -14.32 16 17 C -0.22 -5.46 10.55 -15.06 -0.16 -5.62 16 18 H 0.08 1.78 7.50 -52.49 -0.39 1.39 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 20 N -0.91 -25.81 11.51 55.49 0.64 -25.17 16 21 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.03 -0.40 5.96 -103.84 -0.62 -1.02 16 26 C -0.12 -1.03 8.92 36.01 0.32 -0.71 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.40 6.80 -51.93 -0.35 0.04 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.41 5.60 9.06 45.56 0.41 6.01 16 31 H 0.40 6.03 8.35 -40.82 -0.34 5.69 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.37 8.12 -51.93 -0.42 0.94 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.49 6.83 -51.93 -0.35 0.13 16 41 H 0.08 0.74 7.25 -51.93 -0.38 0.36 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -33.23 350.39 -6.36 -39.59 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.71 Total: 7.05 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.17 Total: 7.58 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.40 Total: -57.24 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.15 Total: -18.24 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.23 -6.36 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038584118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.238 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds