Wall clock time and date at job start Tue Mar 31 2020 08:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31880 * 119.93374 * 2 1 4 4 N 1.28272 * 122.62510 * 179.97438 * 3 2 1 5 5 C 1.32485 * 122.21641 * 0.02562 * 4 3 2 6 6 O 1.35451 * 120.25272 * 180.02562 * 5 4 3 7 7 C 1.40453 * 119.49851 * 359.97438 * 5 4 3 8 8 C 1.47821 * 121.18277 * 179.97438 * 7 5 4 9 9 O 1.21552 * 119.99852 * 89.99408 * 8 7 5 10 10 N 1.34773 * 120.00054 * 270.00203 * 8 7 5 11 11 C 1.46500 * 120.00055 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47404 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.77601 * 303.72538 * 12 11 10 14 14 C 1.53495 * 113.47041 * 172.93944 * 12 11 10 15 15 C 1.53497 * 83.34454 * 219.15595 * 14 12 11 16 16 N 1.47066 * 113.46479 * 74.50242 * 12 11 10 17 17 C 1.36937 * 136.06113 * 321.64192 * 16 12 11 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 12 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 12 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47441 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47001 * 120.00359 * 21 19 17 24 24 H 1.48499 * 109.47209 * 240.00202 * 21 19 17 25 25 C 1.38475 * 119.92724 * 180.26364 * 2 1 3 26 26 C 1.50701 * 121.06377 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.47149 * 89.99567 * 1 2 3 28 28 H 1.08998 * 109.46678 * 209.99823 * 1 2 3 29 29 H 1.09002 * 109.46347 * 329.99829 * 1 2 3 30 30 H 0.96697 * 113.99896 * 269.97909 * 6 5 4 31 31 H 0.96999 * 120.00230 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47316 * 59.99433 * 11 10 8 33 33 H 1.09006 * 109.47204 * 299.99927 * 11 10 8 34 34 H 1.09006 * 114.20556 * 332.74032 * 14 12 11 35 35 H 1.08994 * 114.20812 * 105.36675 * 14 12 11 36 36 H 1.09007 * 113.46266 * 271.28548 * 15 14 12 37 37 H 1.08993 * 113.46849 * 140.85107 * 15 14 12 38 38 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 39 39 H 1.08995 * 109.47134 * 270.22546 * 26 25 2 40 40 H 1.08993 * 109.46934 * 30.22645 * 26 25 2 41 41 H 1.09001 * 109.46977 * 150.22332 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1652 1.1429 0.0000 4 7 3.4465 1.2031 0.0005 5 6 4.2046 0.1166 0.0005 6 8 5.5547 0.2266 0.0016 7 6 3.5979 -1.1501 0.0006 8 6 4.4078 -2.3867 0.0000 9 8 4.7413 -2.8952 1.0525 10 7 4.7766 -2.9502 -1.1674 11 6 5.5798 -4.1754 -1.1679 12 6 5.8581 -4.6023 -2.6106 13 1 4.9472 -4.7383 -3.1935 14 6 6.8366 -5.7796 -2.7218 15 6 7.3682 -4.9919 -3.9273 16 7 6.8654 -3.7688 -3.2839 17 6 7.1889 -2.4383 -3.3067 18 1 6.6228 -1.7348 -2.7144 19 6 8.2451 -1.9941 -4.0903 20 7 8.9353 -2.8517 -4.8118 21 14 8.6868 -0.1794 -4.1208 22 1 7.7654 0.5694 -3.2290 23 1 10.0839 -0.0021 -3.6497 24 1 8.5628 0.3370 -5.5075 25 6 2.1979 -1.2001 -0.0055 26 6 1.4671 -2.5180 -0.0122 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 5.9473 0.2586 -0.8815 31 1 4.5103 -2.5446 -2.0073 32 1 5.0350 -4.9672 -0.6537 33 1 6.5236 -3.9914 -0.6546 34 1 7.5400 -5.8560 -1.8925 35 1 6.3662 -6.7292 -2.9766 36 1 6.8595 -5.2319 -4.8610 37 1 8.4539 -5.0193 -4.0191 38 1 9.6731 -2.5413 -5.3597 39 1 1.2870 -2.8388 1.0138 40 1 0.5146 -2.4027 -0.5293 41 1 2.0712 -3.2659 -0.5259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038584118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:33 Heat of formation + Delta-G solvation = 9.439503 kcal Electronic energy + Delta-G solvation = -25614.399088 eV Core-core repulsion = 21917.148582 eV Total energy + Delta-G solvation = -3697.250506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.66629 -40.79951 -39.72994 -38.95336 -36.06633 -35.65183 -34.26116 -33.76309 -30.16251 -29.86541 -29.29054 -28.77373 -25.61242 -25.39613 -23.84500 -23.46525 -21.87382 -20.99758 -20.14097 -19.48813 -18.92286 -18.24361 -17.59341 -17.08993 -16.96148 -16.13684 -15.99091 -15.79601 -15.62792 -15.19865 -14.87365 -14.59952 -14.44773 -14.13043 -13.92602 -13.64742 -13.58528 -13.36469 -13.32880 -13.00304 -12.90492 -12.72389 -12.60196 -12.32241 -12.30308 -11.93717 -11.71789 -11.58433 -11.13893 -11.00504 -10.85893 -10.58720 -10.55634 -10.19325 -8.89333 -7.88206 -5.19504 -0.72632 -0.46412 1.19399 1.43181 1.44840 1.52130 1.86077 2.01611 2.24102 2.45167 2.94202 3.22399 3.26622 3.35920 3.47549 3.57756 3.76888 3.93663 4.04988 4.12538 4.31343 4.34724 4.56231 4.61432 4.63943 4.69671 4.75306 4.77917 4.86343 4.95680 5.01116 5.07632 5.09097 5.25882 5.31482 5.32868 5.58826 5.74990 5.96835 6.14776 6.27792 6.89871 6.93399 7.40994 7.64110 8.63609 9.29572 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.004961 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.001653 B = 5642.129072 C = 6900.715472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.063 3.937 3 N -0.231 5.231 4 N -0.285 5.285 5 C 0.276 3.724 6 O -0.483 6.483 7 C -0.163 4.163 8 C 0.578 3.422 9 O -0.562 6.562 10 N -0.693 5.693 11 C 0.128 3.872 12 C 0.135 3.865 13 H 0.074 0.926 14 C -0.134 4.134 15 C 0.141 3.859 16 N -0.629 5.629 17 C -0.203 4.203 18 H 0.090 0.910 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.960 3.040 22 H -0.256 1.256 23 H -0.302 1.302 24 H -0.299 1.299 25 C -0.018 4.018 26 C -0.124 4.124 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.421 0.579 31 H 0.409 0.591 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.023 0.977 37 H 0.034 0.966 38 H 0.244 0.756 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.879 -2.410 6.702 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 N -0.075 5.075 4 N -0.136 5.136 5 C 0.090 3.910 6 O -0.291 6.291 7 C -0.178 4.178 8 C 0.363 3.637 9 O -0.441 6.441 10 N -0.342 5.342 11 C 0.004 3.996 12 C 0.028 3.972 13 H 0.092 0.908 14 C -0.172 4.172 15 C 0.015 3.985 16 N -0.355 5.355 17 C -0.332 4.332 18 H 0.107 0.893 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.790 3.210 22 H -0.180 1.180 23 H -0.230 1.230 24 H -0.226 1.226 25 C -0.030 4.030 26 C -0.180 4.180 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.283 0.717 31 H 0.244 0.756 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.438 -0.867 7.942 21.016 hybrid contribution 1.541 0.034 -1.288 2.009 sum -17.897 -0.832 6.654 19.112 Atomic orbital electron populations 1.20965 0.83012 1.06030 1.05711 1.23498 1.01468 0.88153 0.95196 1.72747 0.99650 1.26194 1.08910 1.72983 1.00472 1.26973 1.13183 1.20999 0.86300 0.88770 0.94966 1.84696 1.13387 1.95245 1.35806 1.21388 0.96044 0.94315 1.06015 1.17730 0.79086 0.82732 0.84188 1.90792 1.56801 1.64068 1.32465 1.45905 1.52713 1.27845 1.07736 1.21779 0.94215 0.85448 0.98142 1.22583 0.93693 0.90113 0.90770 0.90839 1.23476 0.98245 0.96844 0.98672 1.22048 0.98159 0.84573 0.93678 1.46013 1.35219 1.02731 1.51566 1.19198 1.10660 0.82557 1.20755 0.89277 1.25480 0.99422 1.00930 1.00308 1.70005 1.23170 1.33820 1.33234 0.85273 0.77664 0.81021 0.77033 1.17974 1.23036 1.22647 1.21565 0.90349 0.99783 0.91315 1.21170 1.01865 0.89623 1.05345 0.87366 0.86950 0.89259 0.71694 0.75560 0.89178 0.93603 0.90343 0.88055 0.95938 0.94782 0.94705 0.87809 0.85582 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.42 71.24 0.67 -0.24 16 2 C 0.06 1.27 6.86 42.61 0.29 1.57 16 3 N -0.23 -6.46 11.40 -47.72 -0.54 -7.01 16 4 N -0.29 -9.41 11.52 -169.56 -1.95 -11.36 16 5 C 0.28 8.98 7.88 85.13 0.67 9.65 16 6 O -0.48 -16.28 13.09 -87.49 -1.15 -17.43 16 7 C -0.16 -4.67 5.69 -19.75 -0.11 -4.78 16 8 C 0.58 18.38 5.62 86.78 0.49 18.86 16 9 O -0.56 -21.90 17.11 -3.88 -0.07 -21.97 16 10 N -0.69 -20.34 5.33 -466.00 -2.49 -22.82 16 11 C 0.13 3.96 5.52 86.38 0.48 4.44 16 12 C 0.13 4.40 4.10 41.79 0.17 4.57 16 13 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.13 -4.18 8.03 30.93 0.25 -3.94 16 15 C 0.14 6.09 7.40 83.18 0.62 6.70 16 16 N -0.63 -28.29 3.65 -713.89 -2.61 -30.89 16 17 C -0.20 -10.18 10.55 84.03 0.89 -9.29 16 18 H 0.09 4.11 7.50 -2.91 -0.02 4.08 16 19 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 20 N -0.95 -55.81 11.51 21.65 0.25 -55.56 16 21 Si 0.96 44.07 29.55 68.60 2.03 46.10 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 C -0.02 -0.38 5.96 -19.36 -0.12 -0.50 16 26 C -0.12 -1.54 8.92 71.24 0.64 -0.90 16 27 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.11 0.41 6.80 -2.39 -0.02 0.40 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.42 11.68 9.06 -74.06 -0.67 11.01 16 31 H 0.41 11.37 8.35 -92.71 -0.77 10.60 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.08 2.52 8.12 -2.38 -0.02 2.50 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.03 1.72 7.12 -2.39 -0.02 1.70 16 38 H 0.24 14.13 8.31 -92.71 -0.77 13.35 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 0.63 6.83 -2.39 -0.02 0.61 16 41 H 0.07 1.08 7.25 -2.39 -0.02 1.06 16 Total: -1.00 -76.03 350.39 -1.49 -77.52 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.36 Total: 20.52 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 5.40 Total: 22.90 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -7.34 Total: -127.64 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.21 Total: -39.40 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -76.03 -1.49 -77.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038584118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.960 kcal (2) G-P(sol) polarization free energy of solvation -76.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds