Wall clock time and date at job start Tue Mar 31 2020 08:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31878 * 119.93072 * 2 1 4 4 N 1.28281 * 122.62358 * 179.97438 * 3 2 1 5 5 C 1.32482 * 122.21626 * 359.97438 * 4 3 2 6 6 O 1.35450 * 120.25092 * 179.97438 * 5 4 3 7 7 C 1.40452 * 119.49664 * 359.97396 * 5 4 3 8 8 C 1.47822 * 121.17724 * 180.02562 * 7 5 4 9 9 O 1.21551 * 120.00767 * 269.98221 * 8 7 5 10 10 N 1.34780 * 119.99598 * 89.98246 * 8 7 5 11 11 C 1.46500 * 119.99941 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47201 * 180.02562 * 11 10 8 13 13 H 1.08997 * 112.97097 * 53.32155 * 12 11 10 14 14 C 1.53952 * 113.77076 * 185.00009 * 12 11 10 15 15 C 1.53946 * 86.29168 * 137.90811 * 14 12 11 16 16 N 1.47586 * 113.76923 * 281.49256 * 12 11 10 17 17 C 1.36931 * 134.48919 * 41.05959 * 16 12 11 18 18 H 1.07999 * 120.00502 * 353.48599 * 17 16 12 19 19 C 1.38814 * 119.99684 * 173.48752 * 17 16 12 20 20 N 1.31614 * 120.00337 * 5.07384 * 19 17 16 21 21 Si 1.86802 * 119.99868 * 185.06603 * 19 17 16 22 22 H 1.48501 * 109.46881 * 94.98938 * 21 19 17 23 23 H 1.48498 * 109.47495 * 214.98542 * 21 19 17 24 24 H 1.48501 * 109.47189 * 334.99079 * 21 19 17 25 25 C 1.38471 * 119.93295 * 179.97438 * 2 1 3 26 26 C 1.50703 * 121.05672 * 359.73726 * 25 2 1 27 27 H 1.08995 * 109.47435 * 270.02754 * 1 2 3 28 28 H 1.09011 * 109.46946 * 30.02958 * 1 2 3 29 29 H 1.09000 * 109.47307 * 150.02431 * 1 2 3 30 30 H 0.96700 * 114.00504 * 89.99671 * 6 5 4 31 31 H 0.96997 * 120.00282 * 359.97438 * 10 8 7 32 32 H 1.09008 * 109.47375 * 300.00045 * 11 10 8 33 33 H 1.08998 * 109.47459 * 59.99845 * 11 10 8 34 34 H 1.08998 * 113.74179 * 252.24991 * 14 12 11 35 35 H 1.08999 * 113.74091 * 23.45026 * 14 12 11 36 36 H 1.08993 * 113.77351 * 90.69014 * 15 14 12 37 37 H 1.08997 * 113.76935 * 221.98105 * 15 14 12 38 38 H 0.97005 * 120.00161 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.47360 * 90.00132 * 26 25 2 40 40 H 1.09011 * 109.46744 * 209.99651 * 26 25 2 41 41 H 1.09003 * 109.47095 * 329.99019 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 0.0005 5 6 4.2045 0.1167 0.0015 6 8 5.5546 0.2267 0.0015 7 6 3.5978 -1.1500 0.0027 8 6 4.4078 -2.3865 0.0044 9 8 4.7411 -2.8963 -1.0474 10 7 4.7769 -2.9486 1.1725 11 6 5.5792 -4.1744 1.1743 12 6 5.8579 -4.5994 2.6174 13 1 4.9524 -4.6852 3.2180 14 6 6.7986 -5.8122 2.7364 15 6 7.4699 -5.0516 3.8943 16 7 6.9347 -3.8273 3.2674 17 6 7.2932 -2.5059 3.2827 18 1 6.7856 -1.8011 2.6409 19 6 8.3093 -2.0721 4.1232 20 7 8.9951 -2.9442 4.8312 21 14 8.7033 -0.2505 4.2493 22 1 7.9788 0.3338 5.4064 23 1 10.1653 -0.0722 4.4394 24 1 8.2791 0.4352 3.0022 25 6 2.1979 -1.2000 0.0005 26 6 1.4671 -2.5179 0.0070 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3634 -0.8902 -0.5134 30 1 5.9466 0.2595 0.8848 31 1 4.5112 -2.5416 2.0119 32 1 5.0335 -4.9666 0.6616 33 1 6.5228 -3.9918 0.6602 34 1 6.2961 -6.7285 3.0463 35 1 7.4439 -5.9538 1.8695 36 1 7.0387 -5.2692 4.8714 37 1 8.5582 -5.1114 3.8868 38 1 9.7049 -2.6410 5.4188 39 1 1.2868 -2.8385 -1.0190 40 1 2.0714 -3.2659 0.5205 41 1 0.5147 -2.4027 0.5245 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038584119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:36 Heat of formation + Delta-G solvation = 5.693382 kcal Electronic energy + Delta-G solvation = -25560.655520 eV Core-core repulsion = 21863.242570 eV Total energy + Delta-G solvation = -3697.412950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.66578 -40.75635 -39.57130 -38.95302 -36.06456 -35.66197 -34.22882 -33.76068 -30.15415 -29.81663 -29.30276 -28.79386 -25.64662 -25.28780 -23.85568 -23.57968 -21.87831 -20.88892 -20.14088 -19.48488 -18.91938 -18.20591 -17.59460 -17.09077 -16.97141 -16.13636 -15.99904 -15.80345 -15.62066 -15.21531 -14.88854 -14.60893 -14.44579 -14.12940 -13.92495 -13.62777 -13.58165 -13.34137 -13.31661 -12.95573 -12.90187 -12.70927 -12.57643 -12.32121 -12.30048 -11.96878 -11.72465 -11.49497 -11.23234 -11.05869 -10.83461 -10.59277 -10.55633 -10.20796 -8.86931 -7.88570 -5.18765 -0.72543 -0.46219 1.19248 1.43714 1.44634 1.51621 1.85578 2.01619 2.24112 2.46034 2.94241 3.20800 3.25905 3.34771 3.44204 3.57657 3.77117 3.98824 4.05020 4.11709 4.31375 4.35674 4.56351 4.60839 4.64254 4.71530 4.75471 4.78084 4.86701 4.95760 5.01329 5.08042 5.09496 5.25962 5.31650 5.35164 5.61092 5.75121 5.97436 6.15290 6.27728 6.90342 6.94971 7.41077 7.65681 8.60966 9.29064 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.004871 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.343512 B = 5746.825302 C = 7001.066702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.063 3.937 3 N -0.231 5.231 4 N -0.285 5.285 5 C 0.276 3.724 6 O -0.483 6.483 7 C -0.162 4.162 8 C 0.579 3.421 9 O -0.562 6.562 10 N -0.693 5.693 11 C 0.130 3.870 12 C 0.133 3.867 13 H 0.075 0.925 14 C -0.130 4.130 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.211 4.211 18 H 0.087 0.913 19 C -0.066 4.066 20 N -0.952 5.952 21 Si 0.957 3.043 22 H -0.291 1.291 23 H -0.304 1.304 24 H -0.262 1.262 25 C -0.018 4.018 26 C -0.124 4.124 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.421 0.579 31 H 0.409 0.591 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.032 0.968 38 H 0.244 0.756 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.109 -2.204 -6.716 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 N -0.075 5.075 4 N -0.136 5.136 5 C 0.090 3.910 6 O -0.291 6.291 7 C -0.177 4.177 8 C 0.363 3.637 9 O -0.441 6.441 10 N -0.342 5.342 11 C 0.006 3.994 12 C 0.027 3.973 13 H 0.093 0.907 14 C -0.169 4.169 15 C 0.026 3.974 16 N -0.356 5.356 17 C -0.340 4.340 18 H 0.105 0.895 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.787 3.213 22 H -0.219 1.219 23 H -0.232 1.232 24 H -0.186 1.186 25 C -0.030 4.030 26 C -0.180 4.180 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.283 0.717 31 H 0.245 0.755 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.657 -0.694 -7.955 21.217 hybrid contribution 1.519 0.078 1.325 2.017 sum -18.138 -0.616 -6.630 19.322 Atomic orbital electron populations 1.20964 0.83032 1.06026 1.05713 1.23491 1.01458 0.88156 0.95201 1.72751 0.99656 1.26194 1.08908 1.72986 1.00465 1.26978 1.13187 1.20998 0.86292 0.88763 0.94965 1.84701 1.13386 1.95242 1.35816 1.21380 0.96021 0.94299 1.06049 1.17730 0.79076 0.82735 0.84173 1.90794 1.56778 1.63990 1.32543 1.45902 1.52782 1.27796 1.07769 1.21722 0.94253 0.85487 0.97925 1.22686 0.92944 0.90569 0.91064 0.90731 1.23579 0.97830 0.96509 0.98950 1.22102 0.97446 0.84159 0.93666 1.46399 1.30088 1.03173 1.55917 1.19256 1.14022 0.83919 1.16812 0.89534 1.25482 0.99921 1.00704 0.99844 1.69998 1.24725 1.33334 1.32058 0.85373 0.76410 0.81359 0.78201 1.21896 1.23181 1.18581 1.21558 0.90355 0.99776 0.91291 1.21175 1.01870 0.89629 1.05345 0.87362 0.89270 0.86955 0.71665 0.75501 0.89057 0.93583 0.88645 0.90313 0.95987 0.94901 0.94665 0.87826 0.90729 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.42 71.24 0.67 -0.23 16 2 C 0.06 1.26 6.86 42.61 0.29 1.55 16 3 N -0.23 -6.41 11.40 -47.74 -0.54 -6.96 16 4 N -0.29 -9.33 11.52 -169.57 -1.95 -11.28 16 5 C 0.28 8.90 7.88 85.13 0.67 9.57 16 6 O -0.48 -16.13 13.09 -87.47 -1.14 -17.27 16 7 C -0.16 -4.61 5.69 -19.76 -0.11 -4.72 16 8 C 0.58 18.20 5.61 86.78 0.49 18.69 16 9 O -0.56 -21.77 17.11 -3.87 -0.07 -21.84 16 10 N -0.69 -20.08 5.51 -465.99 -2.57 -22.64 16 11 C 0.13 4.00 5.54 86.38 0.48 4.47 16 12 C 0.13 4.35 4.33 45.09 0.20 4.54 16 13 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.13 -4.07 7.86 31.26 0.25 -3.83 16 15 C 0.15 6.58 7.42 86.48 0.64 7.23 16 16 N -0.63 -28.36 3.57 -694.07 -2.48 -30.84 16 17 C -0.21 -10.65 10.50 84.04 0.88 -9.77 16 18 H 0.09 4.05 7.79 -2.91 -0.02 4.02 16 19 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 20 N -0.95 -55.75 11.51 21.65 0.25 -55.50 16 21 Si 0.96 44.10 29.56 68.60 2.03 46.13 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 C -0.02 -0.37 5.96 -19.36 -0.12 -0.49 16 26 C -0.12 -1.51 8.92 71.24 0.64 -0.87 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.11 0.40 6.79 -2.39 -0.02 0.38 16 30 H 0.42 11.45 9.06 -74.06 -0.67 10.78 16 31 H 0.41 11.12 8.46 -92.71 -0.78 10.34 16 32 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 2.47 8.10 -2.39 -0.02 2.45 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.03 1.65 7.36 -2.39 -0.02 1.63 16 38 H 0.24 14.17 8.31 -92.70 -0.77 13.40 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.06 7.24 -2.38 -0.02 1.04 16 41 H 0.13 0.60 6.82 -2.39 -0.02 0.58 16 Total: -1.00 -76.22 351.15 -1.41 -77.63 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.37 Total: 19.57 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 5.44 Total: 23.01 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -7.30 Total: -127.23 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.21 Total: -39.11 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.22 -1.41 -77.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038584119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.328 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds