Wall clock time and date at job start Tue Mar 31 2020 08:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47441 * 2 1 4 4 C 1.37980 * 120.05088 * 258.52143 * 3 2 1 5 5 C 1.38304 * 120.17458 * 179.97438 * 4 3 2 6 6 C 1.38594 * 120.26755 * 0.02562 * 5 4 3 7 7 F 1.35100 * 119.95351 * 179.97438 * 6 5 4 8 8 C 1.38172 * 120.09062 * 359.74483 * 6 5 4 9 9 C 1.39558 * 120.04285 * 78.49892 * 3 2 1 10 10 C 1.47850 * 120.13592 * 359.97438 * 9 3 2 11 11 O 1.21553 * 119.99553 * 49.40771 * 10 9 3 12 12 N 1.34777 * 120.00377 * 229.41086 * 10 9 3 13 13 C 1.46494 * 119.99798 * 5.23508 * 12 10 9 14 14 C 1.46497 * 119.99900 * 185.23546 * 12 10 9 15 15 C 1.53493 * 114.20639 * 120.00031 * 14 12 10 16 16 N 1.47070 * 87.98845 * 87.71756 * 15 14 12 17 17 C 1.36931 * 136.05841 * 207.09359 * 16 15 14 18 18 H 1.08001 * 120.00239 * 354.58663 * 17 16 15 19 19 C 1.38814 * 120.00125 * 174.59478 * 17 16 15 20 20 N 1.31613 * 120.00111 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99799 * 0.07536 * 19 17 16 22 22 H 1.48497 * 109.47239 * 175.07558 * 21 19 17 23 23 H 1.48504 * 109.47244 * 295.07386 * 21 19 17 24 24 H 1.48504 * 109.47329 * 55.07172 * 21 19 17 25 25 C 1.47071 * 87.87993 * 27.34266 * 16 15 14 26 26 H 1.09005 * 109.47232 * 59.99480 * 1 2 3 27 27 H 1.08996 * 109.47352 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47066 * 299.99677 * 1 2 3 29 29 H 1.09002 * 109.47066 * 240.00323 * 2 1 3 30 30 H 1.08996 * 109.47487 * 120.00587 * 2 1 3 31 31 H 1.07996 * 119.91285 * 359.97211 * 4 3 2 32 32 H 1.08002 * 119.86443 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.08903 * 180.28148 * 8 6 5 34 34 H 1.08997 * 109.47242 * 274.37955 * 13 12 10 35 35 H 1.08999 * 109.47495 * 34.38286 * 13 12 10 36 36 H 1.09003 * 109.47213 * 154.38106 * 13 12 10 37 37 H 1.08999 * 113.28425 * 346.93173 * 14 12 10 38 38 H 1.08999 * 113.46792 * 332.93733 * 15 14 12 39 39 H 1.09002 * 113.47055 * 202.49347 * 15 14 12 40 40 H 0.97003 * 120.00067 * 5.04121 * 20 19 17 41 41 H 1.08993 * 113.46757 * 87.44239 * 25 16 15 42 42 H 1.09007 * 113.46389 * 217.88310 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4868 1.9930 -1.1704 5 6 2.9479 3.2969 -1.1735 6 6 2.9574 4.0372 -0.0019 7 9 3.4097 5.3102 -0.0120 8 6 2.5004 3.4767 1.1755 9 6 2.0382 2.1598 1.1838 10 6 1.5514 1.5521 2.4407 11 8 1.9555 0.4580 2.7830 12 7 0.6596 2.2111 3.2068 13 6 0.0858 3.4755 2.7397 14 6 0.2642 1.6630 4.5065 15 6 0.5736 2.5810 5.6971 16 7 -0.7359 3.2150 5.4821 17 6 -1.2869 4.4454 5.7219 18 1 -0.7245 5.1931 6.2616 19 6 -2.5683 4.7318 5.2715 20 7 -3.0977 5.9146 5.5015 21 14 -3.5418 3.4380 4.3400 22 1 -4.9124 3.9447 4.0758 23 1 -2.8661 3.1429 3.0510 24 1 -3.6208 2.1976 5.1528 25 6 -1.1949 1.9440 4.9018 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.4824 1.4212 -2.0866 32 1 3.3021 3.7399 -2.0926 33 1 2.5035 4.0552 2.0876 34 1 0.7506 4.2969 3.0070 35 1 -0.0336 3.4423 1.6568 36 1 -0.8867 3.6281 3.2079 37 1 0.5720 0.6272 4.6490 38 1 1.4147 3.2516 5.5211 39 1 0.6482 2.0505 6.6464 40 1 -2.5672 6.6103 5.9207 41 1 -1.5864 1.2456 5.6414 42 1 -1.8605 2.0719 4.0481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043220922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:00 Heat of formation + Delta-G solvation = 20.170342 kcal Electronic energy + Delta-G solvation = -26095.543133 eV Core-core repulsion = 22378.837989 eV Total energy + Delta-G solvation = -3716.705144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.00162 -40.69514 -39.15253 -37.67429 -34.59128 -33.82629 -32.46810 -31.35319 -29.25220 -28.29170 -26.46105 -25.42084 -24.75389 -23.68463 -22.58775 -21.42051 -20.31732 -18.78368 -17.82951 -17.40951 -17.03042 -16.49825 -16.16205 -15.73076 -15.69312 -14.99310 -14.75552 -14.36920 -14.21505 -13.95858 -13.72627 -13.55800 -13.26370 -13.11401 -12.88621 -12.79283 -12.48691 -12.13802 -11.72024 -11.67221 -11.43178 -11.38842 -11.17056 -11.11964 -10.96915 -10.64528 -10.45333 -9.74110 -9.32285 -9.23915 -9.16696 -9.06101 -8.71902 -8.26319 -7.24063 -6.38110 -3.31955 0.68603 0.96643 2.66370 3.08176 3.26915 3.34977 3.42628 3.55934 4.05606 4.39309 4.48348 4.49837 4.63610 4.67594 4.78381 4.97645 5.06171 5.23362 5.29333 5.32928 5.37104 5.51174 5.57859 5.72880 5.76289 5.79397 5.84569 5.84889 5.94031 5.97652 5.99765 6.11400 6.14496 6.19888 6.28536 6.32380 6.34987 6.58395 6.61908 6.90782 7.00159 7.62709 8.15897 8.24111 8.89441 9.40707 10.26484 11.13232 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.005087 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.818888 B = 5503.033027 C = 6079.689145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.043 4.043 4 C -0.097 4.097 5 C -0.134 4.134 6 C 0.089 3.911 7 F -0.137 7.137 8 C -0.116 4.116 9 C -0.092 4.092 10 C 0.562 3.438 11 O -0.537 6.537 12 N -0.572 5.572 13 C 0.074 3.926 14 C 0.097 3.903 15 C 0.111 3.889 16 N -0.625 5.625 17 C -0.300 4.300 18 H 0.082 0.918 19 C -0.023 4.023 20 N -0.933 5.933 21 Si 1.067 2.933 22 H -0.295 1.295 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.085 3.915 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.262 0.738 41 H 0.057 0.943 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.601 -9.452 -13.988 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.044 4.044 4 C -0.115 4.115 5 C -0.153 4.153 6 C 0.070 3.930 7 F -0.116 7.116 8 C -0.135 4.135 9 C -0.095 4.095 10 C 0.350 3.650 11 O -0.416 6.416 12 N -0.302 5.302 13 C -0.068 4.068 14 C -0.008 4.008 15 C -0.016 4.016 16 N -0.354 5.354 17 C -0.427 4.427 18 H 0.100 0.900 19 C -0.222 4.222 20 N -0.576 5.576 21 Si 0.901 3.099 22 H -0.222 1.222 23 H -0.219 1.219 24 H -0.217 1.217 25 C -0.041 4.041 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.215 -10.004 -14.415 19.819 hybrid contribution 1.544 0.881 0.910 1.998 sum 10.760 -9.123 -13.505 19.529 Atomic orbital electron populations 1.21722 0.94372 1.02102 1.02083 1.20782 0.96535 0.91870 1.04487 1.19991 0.96404 0.96539 0.91497 1.20849 0.98550 0.94260 0.97867 1.21270 1.01597 0.95022 0.97364 1.17494 1.00793 0.80092 0.94671 1.91522 1.86766 1.36047 1.97242 1.21363 0.99288 0.94675 0.98217 1.19595 1.02151 0.93555 0.94189 1.18149 0.79064 0.84690 0.83080 1.90714 1.58346 1.19794 1.72713 1.47328 1.41448 1.23442 1.17962 1.22124 1.02171 0.84028 0.98459 1.22555 0.97521 0.97767 0.82997 1.22771 0.90518 0.93436 0.94921 1.46237 1.09094 1.06873 1.73240 1.20136 1.01296 0.86591 1.34642 0.90015 1.25625 0.94673 1.01505 1.00397 1.70902 1.37772 1.03384 1.45501 0.83803 0.75895 0.74360 0.75838 1.22234 1.21916 1.21651 1.23226 0.94300 0.89514 0.97017 0.92674 0.92017 0.92579 0.90847 0.88231 0.84465 0.84422 0.83836 0.92457 0.92558 0.87583 0.87308 0.93324 0.93204 0.92793 0.92502 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.83 37.15 0.37 -1.24 16 2 C -0.10 -1.10 5.53 -27.89 -0.15 -1.26 16 3 C -0.04 -0.52 5.17 -104.22 -0.54 -1.06 16 4 C -0.10 -0.94 9.65 -39.65 -0.38 -1.32 16 5 C -0.13 -1.33 10.02 -39.43 -0.40 -1.73 16 6 C 0.09 1.08 7.29 -39.47 -0.29 0.80 16 7 F -0.14 -1.77 17.26 2.25 0.04 -1.74 16 8 C -0.12 -1.55 8.10 -39.11 -0.32 -1.87 16 9 C -0.09 -1.29 4.69 -104.97 -0.49 -1.78 16 10 C 0.56 9.18 5.78 -12.33 -0.07 9.11 16 11 O -0.54 -9.66 14.44 5.32 0.08 -9.58 16 12 N -0.57 -9.86 3.12 -174.68 -0.54 -10.40 16 13 C 0.07 1.32 8.27 59.84 0.49 1.81 16 14 C 0.10 1.72 4.69 -67.68 -0.32 1.40 16 15 C 0.11 2.13 8.31 -8.51 -0.07 2.05 16 16 N -0.63 -14.37 2.41 -184.62 -0.44 -14.81 16 17 C -0.30 -8.13 10.60 -15.06 -0.16 -8.29 16 18 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 19 C -0.02 -0.65 5.49 -17.43 -0.10 -0.75 16 20 N -0.93 -28.38 13.70 55.49 0.76 -27.62 16 21 Si 1.07 25.62 23.93 -169.99 -4.07 21.55 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 H -0.29 -6.38 5.80 56.52 0.33 -6.05 16 24 H -0.29 -6.58 6.51 56.52 0.37 -6.21 16 25 C 0.09 1.72 5.04 -8.37 -0.04 1.68 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.75 7.23 -51.93 -0.38 0.37 16 29 H 0.07 0.63 7.99 -51.93 -0.41 0.21 16 30 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 31 H 0.14 0.92 8.02 -52.49 -0.42 0.50 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.14 1.94 6.69 -52.48 -0.35 1.59 16 34 H 0.06 0.99 7.01 -51.93 -0.36 0.63 16 35 H 0.06 0.88 6.88 -51.93 -0.36 0.52 16 36 H 0.11 2.23 3.13 -51.93 -0.16 2.07 16 37 H 0.11 1.81 7.26 -51.93 -0.38 1.43 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.26 7.90 8.73 -40.82 -0.36 7.54 16 41 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.05 1.14 3.42 -51.93 -0.18 0.97 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -30.69 331.87 -7.17 -37.87 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.53 Total: 2.17 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.47 Total: -2.44 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.23 Total: -52.84 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.07 Total: 21.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.69 -7.17 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043220922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.039 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds